Wall clock time and date at job start Tue Mar 31 2020 05:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35713 * 116.99934 * 2 1 4 4 C 1.39055 * 119.89782 * 0.02987 * 3 2 1 5 5 C 1.37650 * 120.12193 * 179.71922 * 4 3 2 6 6 C 1.39781 * 119.92488 * 0.50588 * 5 4 3 7 7 C 1.47529 * 120.10092 * 179.76544 * 6 5 4 8 8 O 1.21590 * 120.00030 * 179.72304 * 7 6 5 9 9 N 1.34778 * 119.99919 * 359.72657 * 7 6 5 10 10 C 1.46499 * 119.99771 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47391 * 34.99730 * 10 9 7 12 12 C 1.53002 * 109.46799 * 274.99826 * 10 9 7 13 13 C 1.50701 * 109.46992 * 154.99740 * 10 9 7 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 10 9 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 C 1.39861 * 119.80026 * 359.49306 * 6 5 4 22 22 Cl 1.73593 * 120.06267 * 180.27584 * 21 6 5 23 23 C 1.37895 * 119.87018 * 0.25067 * 21 6 5 24 24 H 1.08999 * 109.47021 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47078 * 299.99419 * 1 2 3 26 26 H 1.08992 * 109.47544 * 59.99691 * 1 2 3 27 27 H 1.08000 * 119.93961 * 359.97438 * 4 3 2 28 28 H 1.08001 * 120.03551 * 180.25145 * 5 4 3 29 29 H 0.96998 * 119.99599 * 359.97438 * 9 7 6 30 30 H 1.08996 * 109.47407 * 60.00500 * 12 10 9 31 31 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 32 32 H 1.09002 * 109.47075 * 299.99543 * 12 10 9 33 33 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 34 34 H 1.07999 * 119.95879 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2857 2.3741 0.0006 5 6 1.9058 3.6030 0.0065 6 6 3.3015 3.6798 0.0011 7 6 3.9701 4.9949 0.0021 8 8 5.1843 5.0596 0.0025 9 7 3.2350 6.1246 0.0026 10 6 3.8990 7.4305 0.0042 11 1 4.8145 7.3734 -0.5847 12 6 4.2413 7.8268 1.4418 13 6 2.9792 8.4624 -0.5960 14 1 1.9980 8.1744 -0.9434 15 6 3.3899 9.7744 -0.7006 16 7 4.5845 10.1252 -0.2771 17 14 2.2495 11.0536 -1.4439 18 1 0.9720 10.4079 -1.8393 19 1 1.9775 12.1158 -0.4423 20 1 2.8922 11.6542 -2.6403 21 6 4.0622 2.5062 0.0005 22 17 5.7959 2.5937 0.0011 23 6 3.4324 1.2795 0.0000 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2073 2.3145 0.0007 28 1 1.3146 4.5068 0.0110 29 1 2.2664 6.0729 0.0020 30 1 4.9066 7.0805 1.8759 31 1 4.7349 8.7986 1.4430 32 1 3.3258 7.8840 2.0307 33 1 4.8736 11.0482 -0.3510 34 1 4.0184 0.3724 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609379463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:16 Heat of formation + Delta-G solvation = -49.228121 kcal Electronic energy + Delta-G solvation = -19526.063719 eV Core-core repulsion = 16257.586132 eV Total energy + Delta-G solvation = -3268.477588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.45446 -38.99150 -37.19201 -36.04076 -34.74709 -32.50065 -31.25570 -30.38449 -28.71353 -27.49394 -25.24586 -23.57826 -22.68781 -21.02239 -19.50548 -18.62809 -17.63715 -16.61771 -16.06588 -15.88228 -15.18389 -15.12690 -14.47668 -14.29429 -14.02373 -13.97669 -13.29154 -12.96710 -12.60066 -12.44456 -12.27978 -11.88990 -11.64236 -11.27178 -11.09759 -10.98299 -10.91301 -10.82853 -10.61239 -10.25243 -10.22875 -9.02497 -8.95142 -8.83198 -8.54079 -8.40940 -7.84784 -6.11690 -4.20911 0.85935 1.06134 2.18706 3.06709 3.14005 3.23808 3.31515 3.33896 4.03552 4.08212 4.37402 4.49458 4.72944 4.78188 4.83970 5.06846 5.12414 5.16843 5.20714 5.36836 5.63243 5.88602 6.08846 6.13815 6.26631 6.85453 6.99867 7.04394 7.17419 7.47556 7.57796 7.70442 7.93495 8.16326 8.66538 8.79093 9.12875 9.46631 10.94333 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.004359 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.974415 B = 6421.967763 C = 7461.277594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.153 3.847 4 C -0.214 4.214 5 C -0.036 4.036 6 C -0.154 4.154 7 C 0.540 3.460 8 O -0.530 6.530 9 N -0.704 5.704 10 C 0.265 3.735 11 H 0.051 0.949 12 C -0.147 4.147 13 C -0.533 4.533 14 H 0.061 0.939 15 C 0.066 3.934 16 N -0.882 5.882 17 Si 0.901 3.099 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.049 3.951 22 Cl -0.022 7.022 23 C -0.159 4.159 24 H 0.101 0.899 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.385 0.615 30 H 0.016 0.984 31 H 0.090 0.910 32 H 0.025 0.975 33 H 0.264 0.736 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.792 -17.925 1.223 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.107 3.893 4 C -0.233 4.233 5 C -0.055 4.055 6 C -0.158 4.158 7 C 0.325 3.675 8 O -0.408 6.408 9 N -0.352 5.352 10 C 0.164 3.836 11 H 0.069 0.931 12 C -0.205 4.205 13 C -0.572 4.572 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.729 3.271 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C 0.020 3.980 22 Cl 0.008 6.992 23 C -0.178 4.178 24 H 0.119 0.881 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.155 0.845 28 H 0.158 0.842 29 H 0.219 0.781 30 H 0.035 0.965 31 H 0.109 0.891 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.542 -17.844 1.239 19.412 hybrid contribution -1.295 0.845 -0.365 1.589 sum -8.837 -16.999 0.874 19.179 Atomic orbital electron populations 1.23127 0.77905 1.04162 1.01770 1.86029 1.21758 1.26617 1.88174 1.18944 0.91612 0.84369 0.94397 1.21225 1.00474 0.91887 1.09733 1.21152 0.92846 0.97888 0.93597 1.20114 0.93427 0.94283 1.07980 1.17934 0.87424 0.83637 0.78555 1.90826 1.12870 1.87071 1.50035 1.46467 1.09448 1.07093 1.72206 1.18765 0.94030 0.76775 0.94043 0.93134 1.22076 0.98763 1.02386 0.97321 1.21246 1.01545 0.93008 1.41381 0.92084 1.24883 0.95285 0.98348 0.95173 1.69915 1.17998 1.18211 1.45856 0.86402 0.80616 0.81236 0.78873 1.19772 1.20891 1.20869 1.20669 0.86904 0.92628 0.97763 1.98423 1.06460 1.98505 1.95834 1.20126 0.91652 0.97275 1.08738 0.88058 0.92291 0.92268 0.84509 0.84175 0.78148 0.96507 0.89138 0.95544 0.92628 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.19 10.48 -18.84 -0.20 -3.38 16 3 C 0.15 1.79 6.69 -39.03 -0.26 1.53 16 4 C -0.21 -2.34 9.01 -39.49 -0.36 -2.69 16 5 C -0.04 -0.47 9.53 -39.22 -0.37 -0.84 16 6 C -0.15 -2.55 5.88 -104.93 -0.62 -3.17 16 7 C 0.54 11.22 7.72 -12.47 -0.10 11.13 16 8 O -0.53 -12.75 13.62 5.29 0.07 -12.68 16 9 N -0.70 -14.83 5.02 -55.98 -0.28 -15.11 16 10 C 0.27 6.78 2.56 -69.08 -0.18 6.60 16 11 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 12 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 13 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 15 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 16 N -0.88 -24.86 11.32 55.43 0.63 -24.24 16 17 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.05 0.76 6.35 -39.10 -0.25 0.52 16 22 Cl -0.02 -0.37 26.01 -51.86 -1.35 -1.72 16 23 C -0.16 -2.06 9.75 -39.46 -0.38 -2.44 16 24 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 26 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 27 H 0.14 1.07 6.27 -52.49 -0.33 0.74 16 28 H 0.14 1.58 6.40 -52.49 -0.34 1.24 16 29 H 0.39 6.91 6.56 -40.82 -0.27 6.65 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 304.60 15.07 4.59 4.59 Total: -1.00 -31.37 304.60 -6.80 -38.17 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -3.67 Total: 3.10 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -1.57 Total: -4.25 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.35 Total: -39.35 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.13 Total: -16.06 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.35 Total: -1.72 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.37 -6.80 -38.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609379463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.061 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds