Wall clock time and date at job start Tue Mar 31 2020 05:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35713 * 116.99934 * 2 1 4 4 C 1.39055 * 119.89782 * 0.02987 * 3 2 1 5 5 C 1.37650 * 120.12193 * 179.71922 * 4 3 2 6 6 C 1.39781 * 119.92488 * 0.50588 * 5 4 3 7 7 C 1.47529 * 120.10092 * 179.76544 * 6 5 4 8 8 O 1.21590 * 120.00030 * 179.72304 * 7 6 5 9 9 N 1.34778 * 119.99919 * 359.72657 * 7 6 5 10 10 C 1.46499 * 119.99771 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47391 * 34.99730 * 10 9 7 12 12 C 1.53002 * 109.46799 * 274.99826 * 10 9 7 13 13 C 1.50701 * 109.46992 * 154.99740 * 10 9 7 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 10 9 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 C 1.39861 * 119.80026 * 359.49306 * 6 5 4 22 22 Cl 1.73593 * 120.06267 * 180.27584 * 21 6 5 23 23 C 1.37895 * 119.87018 * 0.25067 * 21 6 5 24 24 H 1.08999 * 109.47021 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47078 * 299.99419 * 1 2 3 26 26 H 1.08992 * 109.47544 * 59.99691 * 1 2 3 27 27 H 1.08000 * 119.93961 * 359.97438 * 4 3 2 28 28 H 1.08001 * 120.03551 * 180.25145 * 5 4 3 29 29 H 0.96998 * 119.99599 * 359.97438 * 9 7 6 30 30 H 1.08996 * 109.47407 * 60.00500 * 12 10 9 31 31 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 32 32 H 1.09002 * 109.47075 * 299.99543 * 12 10 9 33 33 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 34 34 H 1.07999 * 119.95879 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2857 2.3741 0.0006 5 6 1.9058 3.6030 0.0065 6 6 3.3015 3.6798 0.0011 7 6 3.9701 4.9949 0.0021 8 8 5.1843 5.0596 0.0025 9 7 3.2350 6.1246 0.0026 10 6 3.8990 7.4305 0.0042 11 1 4.8145 7.3734 -0.5847 12 6 4.2413 7.8268 1.4418 13 6 2.9792 8.4624 -0.5960 14 1 1.9980 8.1744 -0.9434 15 6 3.3899 9.7744 -0.7006 16 7 4.5845 10.1252 -0.2771 17 14 2.2495 11.0536 -1.4439 18 1 0.9720 10.4079 -1.8393 19 1 1.9775 12.1158 -0.4423 20 1 2.8922 11.6542 -2.6403 21 6 4.0622 2.5062 0.0005 22 17 5.7959 2.5937 0.0011 23 6 3.4324 1.2795 0.0000 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2073 2.3145 0.0007 28 1 1.3146 4.5068 0.0110 29 1 2.2664 6.0729 0.0020 30 1 4.9066 7.0805 1.8759 31 1 4.7349 8.7986 1.4430 32 1 3.3258 7.8840 2.0307 33 1 4.8736 11.0482 -0.3510 34 1 4.0184 0.3724 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609379463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:16 Heat of formation + Delta-G solvation = -69.964248 kcal Electronic energy + Delta-G solvation = -19526.962905 eV Core-core repulsion = 16257.586132 eV Total energy + Delta-G solvation = -3269.376774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.48334 -40.35850 -38.37050 -37.20771 -36.63869 -34.35928 -32.44030 -31.58063 -30.31730 -28.21419 -27.32264 -24.80573 -23.82643 -22.57992 -21.21296 -19.73442 -18.99287 -17.82171 -17.55314 -16.86461 -16.75635 -16.23814 -16.04426 -15.80683 -15.32605 -15.02376 -14.61102 -14.36324 -14.12767 -13.81802 -13.59100 -13.07039 -12.97292 -12.85406 -12.74669 -12.71795 -12.27017 -12.21890 -12.07579 -11.89281 -11.84451 -11.06926 -10.62494 -10.41223 -9.99917 -9.78395 -9.33553 -8.15671 -6.33198 -0.26419 0.06454 1.05883 1.46096 1.46918 1.59014 1.91246 2.26245 2.37460 2.61593 2.72137 3.15193 3.57656 3.84397 3.90634 4.01992 4.22811 4.42267 4.46612 4.65643 4.73783 4.82271 4.87330 4.94809 5.07760 5.09487 5.12485 5.32100 5.46124 5.62632 5.71034 5.93111 6.11439 6.25288 6.74426 6.97025 7.33877 7.55696 8.91033 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.004359 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.974415 B = 6421.967763 C = 7461.277594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.168 3.832 4 C -0.200 4.200 5 C -0.028 4.028 6 C -0.184 4.184 7 C 0.536 3.464 8 O -0.573 6.573 9 N -0.700 5.700 10 C 0.272 3.728 11 H -0.001 1.001 12 C -0.133 4.133 13 C -0.545 4.545 14 H 0.076 0.924 15 C 0.014 3.986 16 N -0.918 5.918 17 Si 0.974 3.026 18 H -0.257 1.257 19 H -0.279 1.279 20 H -0.285 1.285 21 C 0.036 3.964 22 Cl -0.047 7.047 23 C -0.162 4.162 24 H 0.123 0.877 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.178 0.822 28 H 0.159 0.841 29 H 0.402 0.598 30 H 0.010 0.990 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.265 0.735 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.600 -19.269 0.977 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.120 3.880 4 C -0.218 4.218 5 C -0.047 4.047 6 C -0.188 4.188 7 C 0.324 3.676 8 O -0.454 6.454 9 N -0.349 5.349 10 C 0.169 3.831 11 H 0.017 0.983 12 C -0.192 4.192 13 C -0.583 4.583 14 H 0.094 0.906 15 C -0.186 4.186 16 N -0.557 5.557 17 Si 0.798 3.202 18 H -0.181 1.181 19 H -0.205 1.205 20 H -0.211 1.211 21 C 0.008 3.992 22 Cl -0.017 7.017 23 C -0.182 4.182 24 H 0.141 0.859 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.195 0.805 28 H 0.176 0.824 29 H 0.239 0.761 30 H 0.029 0.971 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.402 -19.230 0.996 22.378 hybrid contribution -0.207 1.071 -0.283 1.127 sum -11.609 -18.159 0.713 21.564 Atomic orbital electron populations 1.23538 0.75365 1.06249 1.03101 1.86050 1.24294 1.25607 1.87358 1.19030 0.91200 0.85463 0.92283 1.21582 1.02361 0.90372 1.07525 1.21348 0.91165 0.99731 0.92430 1.19804 0.95009 0.91826 1.12199 1.18577 0.87072 0.84947 0.77033 1.90794 1.14921 1.87889 1.51796 1.46159 1.10243 1.05850 1.72695 1.18351 0.92518 0.78971 0.93241 0.98288 1.21894 0.98972 1.00813 0.97498 1.21570 1.02056 0.93322 1.41343 0.90640 1.25815 0.96715 1.00617 0.95490 1.70070 1.19936 1.18694 1.46968 0.85274 0.78914 0.78304 0.77687 1.18105 1.20474 1.21146 1.20789 0.85766 0.93523 0.99099 1.98408 1.08650 1.98591 1.96085 1.20238 0.92795 0.96592 1.08550 0.85892 0.90848 0.90890 0.80474 0.82367 0.76145 0.97080 0.91473 0.94020 0.92604 0.82569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -5.25 10.48 -90.35 -0.95 -6.20 16 3 C 0.17 3.36 6.69 22.63 0.15 3.51 16 4 C -0.20 -3.51 9.01 22.33 0.20 -3.31 16 5 C -0.03 -0.65 9.53 22.50 0.21 -0.44 16 6 C -0.18 -6.03 5.88 -20.06 -0.12 -6.15 16 7 C 0.54 22.88 7.72 86.69 0.67 23.55 16 8 O -0.57 -29.08 13.62 -4.00 -0.05 -29.13 16 9 N -0.70 -29.76 5.02 -449.27 -2.25 -32.01 16 10 C 0.27 14.34 2.56 44.25 0.11 14.46 16 11 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 12 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 13 C -0.54 -28.76 8.73 25.60 0.22 -28.54 16 14 H 0.08 3.68 7.74 -2.91 -0.02 3.65 16 15 C 0.01 0.73 5.30 84.66 0.45 1.18 16 16 N -0.92 -53.01 11.32 21.45 0.24 -52.76 16 17 Si 0.97 41.73 29.54 68.60 2.03 43.76 16 18 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 19 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 21 C 0.04 1.14 6.35 22.58 0.14 1.28 16 22 Cl -0.05 -1.64 26.01 -2.72 -0.07 -1.71 16 23 C -0.16 -3.97 9.75 22.35 0.22 -3.75 16 24 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.07 0.37 7.65 -2.39 -0.02 0.35 16 26 H 0.07 0.38 7.65 -2.39 -0.02 0.36 16 27 H 0.18 1.68 6.27 -2.91 -0.02 1.66 16 28 H 0.16 3.03 6.40 -2.91 -0.02 3.01 16 29 H 0.40 13.99 6.56 -92.71 -0.61 13.38 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 32 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 34 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -71.07 304.60 3.52 -67.55 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.53 Total: 13.72 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 4.04 Total: -3.22 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -2.01 Total: -84.78 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -1.00 Total: -35.33 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.07 Total: -1.71 kcal Total: -71.07 3.52 -67.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609379463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.414 kcal (2) G-P(sol) polarization free energy of solvation -71.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds