Wall clock time and date at job start Tue Mar 31 2020 05:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 5 5 H 1.07997 * 120.00579 * 240.00382 * 4 2 1 6 6 C 1.37877 * 119.99887 * 59.99863 * 4 2 1 7 7 N 1.31517 * 120.00053 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47106 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47244 * 120.00229 * 8 6 4 11 11 H 1.48501 * 109.47100 * 240.00286 * 8 6 4 12 12 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 13 13 C 1.46901 * 110.99793 * 275.00325 * 12 2 1 14 14 C 1.50701 * 109.46921 * 179.97438 * 13 12 2 15 15 C 1.38273 * 119.92340 * 89.99873 * 14 13 12 16 16 C 1.38532 * 120.05573 * 179.97438 * 15 14 13 17 17 C 1.39270 * 119.83142 * 0.02562 * 16 15 14 18 18 C 1.38599 * 119.82196 * 359.96216 * 17 16 15 19 19 Cl 1.73602 * 119.99301 * 180.02562 * 18 17 16 20 20 C 1.38207 * 119.92612 * 269.72930 * 14 13 12 21 21 O 1.36526 * 108.63743 * 180.02562 * 17 16 15 22 22 C 1.43990 * 105.48036 * 342.71725 * 21 17 16 23 23 O 1.36494 * 131.53096 * 180.02562 * 16 15 14 24 24 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 25 25 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 27 27 H 0.97002 * 119.99751 * 180.02562 * 7 6 4 28 28 H 1.00899 * 110.99995 * 151.04723 * 12 2 1 29 29 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 30 30 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 31 31 H 1.08002 * 119.96960 * 359.97438 * 15 14 13 32 32 H 1.08003 * 119.93446 * 359.97438 * 20 14 13 33 33 H 1.08994 * 110.57194 * 268.56134 * 22 21 17 34 34 H 1.08999 * 110.69395 * 145.74677 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1465 -2.2871 -3.6037 10 1 1.1661 -1.5868 -4.8160 11 1 3.1466 -0.1875 -4.8164 12 7 2.0196 -0.6925 1.1995 13 6 2.0823 0.2227 2.3469 14 6 2.5872 -0.5217 3.5561 15 6 3.9440 -0.5734 3.8174 16 6 4.4111 -1.2564 4.9285 17 6 3.5107 -1.8910 5.7807 18 6 2.1519 -1.8352 5.5131 19 17 1.0256 -2.6240 6.5728 20 6 1.6926 -1.1465 4.4043 21 8 4.2110 -2.4866 6.7901 22 6 5.5717 -2.5565 6.3246 23 8 5.6752 -1.4548 5.4035 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1612 -3.4845 28 1 2.9173 -1.1205 1.0288 29 1 1.0869 0.6164 2.5525 30 1 2.7587 1.0463 2.1182 31 1 4.6402 -0.0808 3.1548 32 1 0.6332 -1.0999 4.1995 33 1 5.7533 -3.5015 5.8127 34 1 6.2691 -2.4306 7.1528 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610856426.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:58 Heat of formation + Delta-G solvation = -42.887120 kcal Electronic energy + Delta-G solvation = -19418.249038 eV Core-core repulsion = 16150.046417 eV Total energy + Delta-G solvation = -3268.202621 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.30632 -38.54108 -36.81820 -36.26384 -35.62142 -32.79892 -30.76134 -30.37780 -28.15891 -26.14155 -25.33688 -24.33856 -23.09966 -21.68919 -19.83585 -18.14387 -17.82863 -17.62876 -16.63418 -16.17771 -15.11742 -14.94858 -14.76350 -14.24890 -14.18594 -13.87698 -13.49234 -13.27959 -13.07284 -12.92609 -12.18095 -11.91080 -11.80449 -11.49178 -11.22319 -11.08159 -10.90618 -10.87790 -10.63006 -10.32150 -10.17019 -9.99037 -8.88164 -8.73686 -8.52098 -8.16258 -7.37892 -6.06820 -4.13380 0.94691 1.01177 1.97790 2.54469 3.22605 3.26590 3.34806 3.38183 3.40605 4.37415 4.41416 4.48472 4.63258 4.86871 4.95233 5.12103 5.20137 5.24751 5.45150 5.55605 5.79113 5.93939 6.00710 6.09049 6.30223 6.50116 6.82229 6.91140 7.08564 7.16736 7.42628 7.73790 7.83451 8.21822 8.29512 8.57794 8.96236 9.52947 10.99466 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.023415 B = 0.003781 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.552927 B = 7404.605687 C = 8074.107306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.210 3.790 3 H 0.003 0.997 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.682 5.682 13 C 0.098 3.902 14 C -0.041 4.041 15 C -0.091 4.091 16 C 0.044 3.956 17 C 0.027 3.973 18 C -0.016 4.016 19 Cl -0.059 7.059 20 C -0.082 4.082 21 O -0.302 6.302 22 C 0.213 3.787 23 O -0.306 6.306 24 H 0.081 0.919 25 H 0.032 0.968 26 H 0.005 0.995 27 H 0.261 0.739 28 H 0.333 0.667 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.141 0.859 32 H 0.151 0.849 33 H 0.085 0.915 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.616 -4.133 17.191 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.103 3.897 3 H 0.021 0.979 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.314 5.314 13 C -0.031 4.031 14 C -0.042 4.042 15 C -0.110 4.110 16 C -0.001 4.001 17 C -0.018 4.018 18 C -0.043 4.043 19 Cl -0.030 7.030 20 C -0.102 4.102 21 O -0.218 6.218 22 C 0.101 3.899 23 O -0.222 6.222 24 H 0.100 0.900 25 H 0.051 0.949 26 H 0.024 0.976 27 H 0.071 0.929 28 H 0.150 0.850 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.159 0.841 32 H 0.168 0.832 33 H 0.102 0.898 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.955 -4.303 17.473 18.665 hybrid contribution 1.188 -0.165 -0.857 1.474 sum 6.143 -4.467 16.616 18.270 Atomic orbital electron populations 1.21724 0.97713 0.99478 0.99456 1.19158 0.92748 0.92427 0.85323 0.97890 1.21276 1.31529 1.12563 0.90357 0.92121 1.24911 0.95002 0.94970 0.99059 1.69903 1.36596 1.22864 1.23432 0.86468 0.78632 0.79620 0.82840 1.19749 1.20945 1.21094 1.60835 1.32344 1.32571 1.05618 1.20914 1.00522 0.93244 0.88461 1.19783 0.90974 0.97069 0.96351 1.20138 0.95751 1.00867 0.94261 1.19552 0.82640 1.01551 0.96325 1.19287 0.92218 1.00559 0.89748 1.19794 0.86054 1.02898 0.95561 1.98370 1.60632 1.79049 1.64926 1.20819 1.01510 0.96235 0.91601 1.87397 1.19963 1.77672 1.36752 1.25624 0.83093 0.90052 0.91144 1.87373 1.25493 1.51197 1.58172 0.90042 0.94856 0.97609 0.92932 0.84972 0.90078 0.94496 0.84132 0.83177 0.89774 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.19 37.15 0.34 -2.65 16 2 C 0.21 5.09 2.60 -68.87 -0.18 4.91 16 3 H 0.00 0.09 7.80 -51.93 -0.40 -0.31 16 4 C -0.52 -13.79 8.59 -34.44 -0.30 -14.09 16 5 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 N -0.68 -13.64 6.29 -109.22 -0.69 -14.33 16 13 C 0.10 1.60 5.61 -4.97 -0.03 1.57 16 14 C -0.04 -0.58 5.39 -104.62 -0.56 -1.15 16 15 C -0.09 -1.24 9.71 -39.46 -0.38 -1.62 16 16 C 0.04 0.60 7.15 -39.09 -0.28 0.32 16 17 C 0.03 0.38 6.94 -39.06 -0.27 0.11 16 18 C -0.02 -0.22 6.33 -39.40 -0.25 -0.46 16 19 Cl -0.06 -0.74 28.96 -51.86 -1.50 -2.24 16 20 C -0.08 -1.13 9.47 -39.54 -0.37 -1.50 16 21 O -0.30 -3.80 11.40 -45.77 -0.52 -4.32 16 22 C 0.21 1.98 8.89 101.05 0.90 2.88 16 23 O -0.31 -3.83 11.40 -45.67 -0.52 -4.35 16 24 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.33 6.57 8.22 -39.29 -0.32 6.25 16 29 H 0.08 1.31 7.38 -51.93 -0.38 0.93 16 30 H 0.04 0.60 8.00 -51.93 -0.42 0.18 16 31 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 306.79 15.07 4.62 4.62 Total: -1.00 -28.82 306.79 -8.36 -37.18 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -3.88 Total: 1.88 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -1.48 Total: -10.10 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: -0.06 Total: -38.51 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -1.04 Total: -8.67 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.82 -8.36 -37.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610856426.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.706 kcal (2) G-P(sol) polarization free energy of solvation -28.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds