Wall clock time and date at job start Tue Mar 31 2020 05:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 5 5 H 1.07997 * 120.00579 * 240.00382 * 4 2 1 6 6 C 1.37877 * 119.99887 * 59.99863 * 4 2 1 7 7 N 1.31517 * 120.00053 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47106 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47244 * 120.00229 * 8 6 4 11 11 H 1.48501 * 109.47100 * 240.00286 * 8 6 4 12 12 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 13 13 C 1.46901 * 110.99793 * 275.00325 * 12 2 1 14 14 C 1.50701 * 109.46921 * 179.97438 * 13 12 2 15 15 C 1.38273 * 119.92340 * 89.99873 * 14 13 12 16 16 C 1.38532 * 120.05573 * 179.97438 * 15 14 13 17 17 C 1.39270 * 119.83142 * 0.02562 * 16 15 14 18 18 C 1.38599 * 119.82196 * 359.96216 * 17 16 15 19 19 Cl 1.73602 * 119.99301 * 180.02562 * 18 17 16 20 20 C 1.38207 * 119.92612 * 269.72930 * 14 13 12 21 21 O 1.36526 * 108.63743 * 180.02562 * 17 16 15 22 22 C 1.43990 * 105.48036 * 342.71725 * 21 17 16 23 23 O 1.36494 * 131.53096 * 180.02562 * 16 15 14 24 24 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 25 25 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 27 27 H 0.97002 * 119.99751 * 180.02562 * 7 6 4 28 28 H 1.00899 * 110.99995 * 151.04723 * 12 2 1 29 29 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 30 30 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 31 31 H 1.08002 * 119.96960 * 359.97438 * 15 14 13 32 32 H 1.08003 * 119.93446 * 359.97438 * 20 14 13 33 33 H 1.08994 * 110.57194 * 268.56134 * 22 21 17 34 34 H 1.08999 * 110.69395 * 145.74677 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1465 -2.2871 -3.6037 10 1 1.1661 -1.5868 -4.8160 11 1 3.1466 -0.1875 -4.8164 12 7 2.0196 -0.6925 1.1995 13 6 2.0823 0.2227 2.3469 14 6 2.5872 -0.5217 3.5561 15 6 3.9440 -0.5734 3.8174 16 6 4.4111 -1.2564 4.9285 17 6 3.5107 -1.8910 5.7807 18 6 2.1519 -1.8352 5.5131 19 17 1.0256 -2.6240 6.5728 20 6 1.6926 -1.1465 4.4043 21 8 4.2110 -2.4866 6.7901 22 6 5.5717 -2.5565 6.3246 23 8 5.6752 -1.4548 5.4035 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1612 -3.4845 28 1 2.9173 -1.1205 1.0288 29 1 1.0869 0.6164 2.5525 30 1 2.7587 1.0463 2.1182 31 1 4.6402 -0.0808 3.1548 32 1 0.6332 -1.0999 4.1995 33 1 5.7533 -3.5015 5.8127 34 1 6.2691 -2.4306 7.1528 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610856426.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:58 Heat of formation + Delta-G solvation = -60.743627 kcal Electronic energy + Delta-G solvation = -19419.023355 eV Core-core repulsion = 16150.046417 eV Total energy + Delta-G solvation = -3268.976937 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.24855 -39.64677 -37.91610 -37.34540 -37.07509 -34.58177 -32.21189 -31.41985 -29.70996 -27.42073 -26.91488 -25.69505 -24.13015 -22.87338 -21.68158 -19.14273 -19.00831 -18.55219 -18.24146 -17.29322 -16.83621 -16.17091 -15.78584 -15.69268 -15.46974 -15.20508 -14.79827 -14.50489 -14.31564 -14.03308 -13.66098 -13.48227 -13.00053 -12.80500 -12.70601 -12.60846 -12.56426 -12.20781 -12.15212 -12.04974 -11.90305 -11.58601 -10.84518 -10.55072 -9.78673 -9.21215 -9.01487 -8.10819 -6.24131 -0.12264 -0.03823 0.94742 1.43118 1.45853 1.56583 1.62060 2.30759 2.39096 2.44703 3.18543 3.39435 3.62468 3.73771 3.87447 3.98040 4.07406 4.13073 4.28889 4.42427 4.69114 4.75369 4.83380 4.91640 4.95561 5.13766 5.23045 5.26901 5.37688 5.51642 5.69933 5.90518 5.93041 6.27049 6.47383 6.77882 7.01292 7.46240 8.94712 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.023415 B = 0.003781 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.552927 B = 7404.605687 C = 8074.107306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.214 3.786 3 H -0.023 1.023 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.959 3.041 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.680 5.680 13 C 0.103 3.897 14 C -0.047 4.047 15 C -0.092 4.092 16 C 0.039 3.961 17 C 0.026 3.974 18 C -0.025 4.025 19 Cl -0.051 7.051 20 C -0.081 4.081 21 O -0.312 6.312 22 C 0.204 3.796 23 O -0.316 6.316 24 H 0.055 0.945 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.262 0.738 28 H 0.334 0.666 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.149 0.851 32 H 0.157 0.843 33 H 0.104 0.896 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.540 -5.080 18.040 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 H -0.005 1.005 4 C -0.574 4.574 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.207 1.207 12 N -0.311 5.311 13 C -0.026 4.026 14 C -0.048 4.048 15 C -0.111 4.111 16 C -0.006 4.006 17 C -0.020 4.020 18 C -0.052 4.052 19 Cl -0.022 7.022 20 C -0.100 4.100 21 O -0.229 6.229 22 C 0.093 3.907 23 O -0.233 6.233 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.151 0.849 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.166 0.834 32 H 0.175 0.825 33 H 0.122 0.878 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.892 -5.261 18.347 19.975 hybrid contribution 0.957 0.101 -0.998 1.386 sum 6.849 -5.160 17.349 19.353 Atomic orbital electron populations 1.21554 0.97580 0.98940 0.99272 1.18953 0.92847 0.91071 0.86496 1.00529 1.21610 1.31534 1.12619 0.91603 0.92323 1.25672 0.95214 0.95651 1.01881 1.70023 1.37500 1.24024 1.24048 0.85494 0.78072 0.78627 0.79326 1.19169 1.20775 1.20721 1.60714 1.32474 1.32934 1.05009 1.20852 1.00918 0.92917 0.87875 1.19492 0.91441 0.97940 0.95927 1.20200 0.95627 1.00744 0.94526 1.19599 0.83278 1.01449 0.96264 1.19439 0.92372 1.00267 0.89913 1.19839 0.86402 1.03167 0.95785 1.98369 1.60349 1.78878 1.64637 1.20882 1.01794 0.95871 0.91497 1.87382 1.21327 1.77470 1.36677 1.26196 0.82234 0.90063 0.92177 1.87357 1.24869 1.52356 1.58700 0.92593 0.95381 0.95394 0.92890 0.84859 0.89856 0.94327 0.83373 0.82510 0.87813 0.81430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.51 9.19 71.98 0.66 -4.85 16 2 C 0.21 10.44 2.60 44.16 0.11 10.55 16 3 H -0.02 -1.21 7.80 -2.39 -0.02 -1.23 16 4 C -0.54 -28.52 8.59 25.60 0.22 -28.30 16 5 H 0.06 3.08 7.62 -2.91 -0.02 3.05 16 6 C 0.02 0.82 5.30 84.65 0.45 1.26 16 7 N -0.92 -51.61 11.32 21.45 0.24 -51.37 16 8 Si 0.96 42.66 29.54 68.60 2.03 44.69 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 N -0.68 -26.94 6.29 -499.45 -3.14 -30.08 16 13 C 0.10 3.31 5.61 85.56 0.48 3.79 16 14 C -0.05 -1.30 5.39 -19.86 -0.11 -1.41 16 15 C -0.09 -2.41 9.71 22.35 0.22 -2.19 16 16 C 0.04 1.01 7.15 22.59 0.16 1.17 16 17 C 0.03 0.67 6.94 22.60 0.16 0.83 16 18 C -0.02 -0.64 6.33 22.39 0.14 -0.50 16 19 Cl -0.05 -1.23 28.96 -2.72 -0.08 -1.31 16 20 C -0.08 -2.14 9.47 22.29 0.21 -1.93 16 21 O -0.31 -7.22 11.40 -76.35 -0.87 -8.09 16 22 C 0.20 3.25 8.89 113.37 1.01 4.26 16 23 O -0.32 -7.27 11.40 -75.98 -0.87 -8.14 16 24 H 0.06 2.97 6.07 -2.39 -0.01 2.95 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.03 1.16 7.45 -2.39 -0.02 1.14 16 27 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 28 H 0.33 13.05 8.22 -89.69 -0.74 12.31 16 29 H 0.08 2.62 7.38 -2.39 -0.02 2.61 16 30 H 0.04 1.24 8.00 -2.39 -0.02 1.22 16 31 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 32 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.17 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -60.61 306.79 1.42 -59.18 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.40 Total: 12.42 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 3.71 Total: -17.31 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -2.90 Total: -81.45 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -1.74 Total: -16.23 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -60.61 1.42 -59.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610856426.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.562 kcal (2) G-P(sol) polarization free energy of solvation -60.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds