Wall clock time and date at job start Tue Mar 31 2020 05:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 C 1.38268 * 119.92601 * 269.73153 * 14 13 12 16 16 C 1.38535 * 120.05347 * 179.70437 * 15 14 13 17 17 C 1.39267 * 119.83412 * 0.56637 * 16 15 14 18 18 C 1.38611 * 119.81986 * 359.72711 * 17 16 15 19 19 Cl 1.73602 * 119.98993 * 180.02562 * 18 17 16 20 20 C 1.38211 * 119.92234 * 89.99775 * 14 13 12 21 21 O 1.36525 * 108.64090 * 179.72224 * 17 16 15 22 22 C 1.43993 * 105.47832 * 342.72739 * 21 17 16 23 23 O 1.36499 * 131.52891 * 180.22786 * 16 15 14 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.00904 * 110.99622 * 321.04878 * 12 2 1 29 29 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 30 30 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 31 31 H 1.08007 * 119.97114 * 359.97438 * 15 14 13 32 32 H 1.08005 * 119.93912 * 0.02688 * 20 14 13 33 33 H 1.09003 * 110.56930 * 268.55267 * 22 21 17 34 34 H 1.08994 * 110.70155 * 145.74255 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 6 3.9450 -0.5672 -3.8195 16 6 4.4136 -1.2556 -4.9267 17 6 3.5141 -1.8907 -5.7794 18 6 2.1551 -1.8356 -5.5127 19 17 1.0300 -2.6263 -6.5723 20 6 1.6951 -1.1513 -4.4014 21 8 4.2154 -2.4871 -6.7876 22 6 5.5155 -1.8683 -6.7697 23 8 5.6783 -1.4541 -5.4004 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1611 3.4845 28 1 1.4495 -1.4978 -1.4102 29 1 1.0871 0.6165 -2.5525 30 1 2.7588 1.0464 -2.1181 31 1 4.6402 -0.0698 -3.1594 32 1 0.6358 -1.1091 -4.1948 33 1 5.5383 -1.0059 -7.4360 34 1 6.2876 -2.5858 -7.0472 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610856427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:01 Heat of formation + Delta-G solvation = -41.549383 kcal Electronic energy + Delta-G solvation = -19408.638312 eV Core-core repulsion = 16140.493699 eV Total energy + Delta-G solvation = -3268.144613 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.30267 -38.55972 -36.83571 -36.27420 -35.70004 -32.76013 -30.80422 -30.38069 -28.09853 -26.06419 -25.19066 -24.39426 -23.09371 -21.68233 -20.23723 -18.15639 -17.76199 -17.58336 -16.64068 -16.08189 -15.16280 -14.81996 -14.77835 -14.26412 -14.17690 -13.85579 -13.55647 -13.23960 -13.08173 -12.78384 -12.04946 -11.92991 -11.77084 -11.71496 -11.34975 -11.09076 -10.89366 -10.80736 -10.76332 -10.46113 -10.16994 -9.90040 -9.06123 -8.71982 -8.37252 -8.18994 -7.32000 -5.99973 -4.03309 0.95679 0.99189 1.94861 2.55847 3.23604 3.34786 3.36768 3.38605 3.42781 4.41736 4.44136 4.46775 4.62688 4.86012 4.97703 5.08007 5.21635 5.31823 5.41187 5.59442 5.80668 5.88652 6.01419 6.07693 6.27892 6.51019 6.65151 6.80539 6.91271 7.04206 7.29206 7.70947 7.85129 8.22479 8.45780 8.55755 9.03518 9.62120 11.06969 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.023900 B = 0.003749 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.266660 B = 7466.426071 C = 8126.225865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.036 0.964 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.289 1.289 10 H -0.278 1.278 11 H -0.277 1.277 12 N -0.678 5.678 13 C 0.098 3.902 14 C -0.040 4.040 15 C -0.074 4.074 16 C 0.044 3.956 17 C 0.028 3.972 18 C -0.015 4.015 19 Cl -0.060 7.060 20 C -0.100 4.100 21 O -0.302 6.302 22 C 0.212 3.788 23 O -0.304 6.304 24 H 0.006 0.994 25 H 0.028 0.972 26 H 0.090 0.910 27 H 0.260 0.740 28 H 0.328 0.672 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.084 0.916 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.167 -2.661 -18.829 19.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.054 0.946 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.215 1.215 10 H -0.204 1.204 11 H -0.203 1.203 12 N -0.308 5.308 13 C -0.032 4.032 14 C -0.041 4.041 15 C -0.093 4.093 16 C -0.001 4.001 17 C -0.018 4.018 18 C -0.043 4.043 19 Cl -0.031 7.031 20 C -0.119 4.119 21 O -0.218 6.218 22 C 0.101 3.899 23 O -0.221 6.221 24 H 0.025 0.975 25 H 0.048 0.952 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.101 0.899 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.824 -2.669 -18.661 19.458 hybrid contribution -0.591 -0.499 0.329 0.841 sum 4.233 -3.168 -18.331 19.079 Atomic orbital electron populations 1.22447 1.00580 0.99324 1.00600 1.19214 0.89697 0.94505 0.86202 0.94647 1.21103 1.30358 1.12518 0.89505 0.91936 1.24940 0.95297 0.95185 0.99028 1.69869 1.37236 1.23149 1.23499 0.86560 0.79198 0.79619 0.81995 1.21473 1.20362 1.20281 1.60918 1.58429 1.08790 1.02644 1.20896 0.99198 0.95153 0.87923 1.19781 0.91440 0.97037 0.95871 1.20136 0.95628 0.98532 0.95021 1.19622 0.82291 1.00551 0.97602 1.19289 0.91949 0.98902 0.91645 1.19722 0.85838 1.02636 0.96084 1.98369 1.60717 1.79054 1.64952 1.20822 1.01193 0.97658 0.92276 1.87400 1.24737 1.58842 1.50794 1.25624 0.84673 0.96895 0.82747 1.87396 1.23800 1.84233 1.26623 0.97544 0.95240 0.89166 0.92988 0.85519 0.94491 0.90093 0.83690 0.83612 0.89894 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 8.94 37.16 0.33 -3.58 16 2 C 0.21 5.07 2.57 -68.87 -0.18 4.89 16 3 H 0.04 0.93 7.80 -51.93 -0.40 0.52 16 4 C -0.50 -13.40 8.84 -34.44 -0.30 -13.70 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.16 11.32 55.43 0.63 -24.54 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.68 -13.52 6.22 -109.22 -0.68 -14.20 16 13 C 0.10 1.58 5.61 -4.97 -0.03 1.55 16 14 C -0.04 -0.57 5.39 -104.62 -0.56 -1.13 16 15 C -0.07 -1.04 9.71 -39.46 -0.38 -1.42 16 16 C 0.04 0.61 7.15 -39.09 -0.28 0.33 16 17 C 0.03 0.38 6.94 -39.06 -0.27 0.11 16 18 C -0.02 -0.21 6.33 -39.40 -0.25 -0.46 16 19 Cl -0.06 -0.74 28.96 -51.86 -1.50 -2.24 16 20 C -0.10 -1.32 9.47 -39.54 -0.37 -1.70 16 21 O -0.30 -3.80 11.40 -45.77 -0.52 -4.32 16 22 C 0.21 1.95 8.89 101.05 0.90 2.85 16 23 O -0.30 -3.86 11.40 -45.69 -0.52 -4.38 16 24 H 0.01 0.11 7.45 -51.93 -0.39 -0.27 16 25 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 26 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.33 6.30 8.46 -39.29 -0.33 5.96 16 29 H 0.04 0.58 7.38 -51.93 -0.38 0.19 16 30 H 0.08 1.31 7.99 -51.93 -0.42 0.89 16 31 H 0.15 1.94 8.06 -52.48 -0.42 1.52 16 32 H 0.15 1.72 8.06 -52.48 -0.42 1.30 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.13 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 307.12 15.07 4.63 4.63 Total: -1.00 -29.07 307.12 -8.38 -37.46 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -3.90 Total: 2.19 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -1.50 Total: -10.83 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: -0.05 Total: -38.73 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -1.04 Total: -8.70 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.07 -8.38 -37.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610856427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.094 kcal (2) G-P(sol) polarization free energy of solvation -29.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds