Wall clock time and date at job start Tue Mar 31 2020 05:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 C 1.38268 * 119.92601 * 269.73153 * 14 13 12 16 16 C 1.38535 * 120.05347 * 179.70437 * 15 14 13 17 17 C 1.39267 * 119.83412 * 0.56637 * 16 15 14 18 18 C 1.38611 * 119.81986 * 359.72711 * 17 16 15 19 19 Cl 1.73602 * 119.98993 * 180.02562 * 18 17 16 20 20 C 1.38211 * 119.92234 * 89.99775 * 14 13 12 21 21 O 1.36525 * 108.64090 * 179.72224 * 17 16 15 22 22 C 1.43993 * 105.47832 * 342.72739 * 21 17 16 23 23 O 1.36499 * 131.52891 * 180.22786 * 16 15 14 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.00904 * 110.99622 * 321.04878 * 12 2 1 29 29 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 30 30 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 31 31 H 1.08007 * 119.97114 * 359.97438 * 15 14 13 32 32 H 1.08005 * 119.93912 * 0.02688 * 20 14 13 33 33 H 1.09003 * 110.56930 * 268.55267 * 22 21 17 34 34 H 1.08994 * 110.70155 * 145.74255 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 6 3.9450 -0.5672 -3.8195 16 6 4.4136 -1.2556 -4.9267 17 6 3.5141 -1.8907 -5.7794 18 6 2.1551 -1.8356 -5.5127 19 17 1.0300 -2.6263 -6.5723 20 6 1.6951 -1.1513 -4.4014 21 8 4.2154 -2.4871 -6.7876 22 6 5.5155 -1.8683 -6.7697 23 8 5.6783 -1.4541 -5.4004 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1611 3.4845 28 1 1.4495 -1.4978 -1.4102 29 1 1.0871 0.6165 -2.5525 30 1 2.7588 1.0464 -2.1181 31 1 4.6402 -0.0698 -3.1594 32 1 0.6358 -1.1091 -4.1948 33 1 5.5383 -1.0059 -7.4360 34 1 6.2876 -2.5858 -7.0472 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610856427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:01 Heat of formation + Delta-G solvation = -59.695887 kcal Electronic energy + Delta-G solvation = -19409.425203 eV Core-core repulsion = 16140.493699 eV Total energy + Delta-G solvation = -3268.931504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.24076 -39.65742 -37.93151 -37.37477 -37.09174 -34.56063 -32.23564 -31.41981 -29.60140 -27.22132 -26.92984 -25.69340 -24.12254 -22.83963 -22.08020 -19.13457 -18.85423 -18.53728 -18.19388 -17.35616 -16.70763 -16.31220 -15.85342 -15.54429 -15.30628 -15.17925 -14.79104 -14.44008 -14.36418 -14.04146 -13.56933 -13.36427 -13.21735 -12.82843 -12.79088 -12.63198 -12.59719 -12.26637 -12.11799 -12.04428 -11.85802 -11.59335 -11.01479 -10.43964 -9.76245 -9.22369 -8.91543 -8.05936 -6.16298 -0.10841 -0.04475 0.93663 1.46611 1.47360 1.55107 1.64924 2.29061 2.40077 2.48275 3.22791 3.40316 3.62870 3.77655 3.90656 3.94569 4.08259 4.12505 4.29467 4.46885 4.69437 4.72369 4.81144 4.84724 4.95656 4.98580 5.14862 5.22500 5.37686 5.48341 5.74458 5.86592 5.93886 6.31371 6.66357 6.83585 6.97928 7.53401 8.98915 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.023900 B = 0.003749 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.266660 B = 7466.426071 C = 8126.225865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.216 3.784 3 H 0.009 0.991 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.285 1.285 10 H -0.273 1.273 11 H -0.275 1.275 12 N -0.683 5.683 13 C 0.103 3.897 14 C -0.046 4.046 15 C -0.081 4.081 16 C 0.037 3.963 17 C 0.026 3.974 18 C -0.024 4.024 19 Cl -0.051 7.051 20 C -0.094 4.094 21 O -0.313 6.313 22 C 0.203 3.797 23 O -0.318 6.318 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.061 0.939 27 H 0.260 0.740 28 H 0.333 0.667 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.145 0.855 32 H 0.160 0.840 33 H 0.109 0.891 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.549 -3.411 -19.979 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.027 0.973 4 C -0.553 4.553 5 H 0.071 0.929 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.211 1.211 10 H -0.198 1.198 11 H -0.201 1.201 12 N -0.313 5.313 13 C -0.025 4.025 14 C -0.047 4.047 15 C -0.100 4.100 16 C -0.007 4.007 17 C -0.020 4.020 18 C -0.051 4.051 19 Cl -0.022 7.022 20 C -0.113 4.113 21 O -0.229 6.229 22 C 0.093 3.907 23 O -0.234 6.234 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.151 0.849 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.163 0.837 32 H 0.178 0.822 33 H 0.126 0.874 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.216 -3.426 -19.839 20.797 hybrid contribution -0.648 -0.281 0.550 0.896 sum 4.568 -3.708 -19.289 20.166 Atomic orbital electron populations 1.22253 0.99792 0.99333 1.00367 1.18961 0.90175 0.92984 0.87139 0.97272 1.21426 1.30362 1.12441 0.91114 0.92887 1.25646 0.95515 0.95858 1.01671 1.69990 1.38011 1.24166 1.23964 0.85644 0.78618 0.78695 0.78820 1.21082 1.19850 1.20057 1.60729 1.58246 1.09396 1.02932 1.20822 0.99806 0.94591 0.87312 1.19505 0.91723 0.97925 0.95583 1.20181 0.95694 0.98771 0.95338 1.19653 0.82950 1.00561 0.97570 1.19447 0.92169 0.98496 0.91845 1.19799 0.86112 1.02858 0.96348 1.98370 1.60328 1.78859 1.64626 1.20922 1.01710 0.96841 0.91807 1.87381 1.25942 1.59218 1.50388 1.26209 0.84115 0.98837 0.81524 1.87374 1.23319 1.84331 1.28420 0.95008 0.94984 0.92062 0.93053 0.84941 0.93456 0.90519 0.83685 0.82230 0.87355 0.81735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.21 8.94 71.98 0.64 -6.56 16 2 C 0.22 10.40 2.57 44.17 0.11 10.52 16 3 H 0.01 0.50 7.80 -2.39 -0.02 0.48 16 4 C -0.51 -27.98 8.84 25.60 0.23 -27.75 16 5 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 6 C 0.01 0.62 5.30 84.66 0.45 1.07 16 7 N -0.92 -52.08 11.32 21.45 0.24 -51.84 16 8 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 9 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 N -0.68 -26.95 6.22 -499.46 -3.11 -30.06 16 13 C 0.10 3.27 5.61 85.56 0.48 3.75 16 14 C -0.05 -1.27 5.39 -19.86 -0.11 -1.38 16 15 C -0.08 -2.21 9.71 22.35 0.22 -1.99 16 16 C 0.04 1.00 7.15 22.59 0.16 1.16 16 17 C 0.03 0.68 6.94 22.61 0.16 0.84 16 18 C -0.02 -0.60 6.33 22.39 0.14 -0.46 16 19 Cl -0.05 -1.17 28.96 -2.72 -0.08 -1.25 16 20 C -0.09 -2.33 9.47 22.29 0.21 -2.12 16 21 O -0.31 -7.25 11.40 -76.34 -0.87 -8.12 16 22 C 0.20 3.23 8.89 113.37 1.01 4.24 16 23 O -0.32 -7.56 11.40 -76.04 -0.87 -8.43 16 24 H 0.03 1.24 7.45 -2.38 -0.02 1.22 16 25 H 0.03 1.39 8.13 -2.39 -0.02 1.37 16 26 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 27 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 28 H 0.33 12.50 8.46 -89.69 -0.76 11.74 16 29 H 0.05 1.40 7.38 -2.39 -0.02 1.39 16 30 H 0.08 2.47 7.99 -2.39 -0.02 2.45 16 31 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 32 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 33 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.17 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -61.47 307.12 1.42 -60.04 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.38 Total: 12.74 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 3.70 Total: -18.68 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -2.86 Total: -81.90 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -1.74 Total: -16.55 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -61.47 1.42 -60.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610856427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.349 kcal (2) G-P(sol) polarization free energy of solvation -61.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds