Wall clock time and date at job start Tue Mar 31 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35707 * 117.00574 * 2 1 4 4 C 1.39063 * 119.89441 * 0.02562 * 3 2 1 5 5 C 1.37648 * 120.12030 * 179.72369 * 4 3 2 6 6 C 1.39786 * 119.92448 * 0.52754 * 5 4 3 7 7 C 1.47527 * 120.09851 * 179.74651 * 6 5 4 8 8 O 1.21593 * 119.99873 * 179.72478 * 7 6 5 9 9 N 1.34777 * 119.99863 * 359.72173 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72391 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00513 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99651 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47037 * 59.99882 * 16 14 12 18 18 H 1.48501 * 109.46667 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47133 * 299.99829 * 16 14 12 20 20 C 1.39852 * 119.80025 * 359.47207 * 6 5 4 21 21 Cl 1.73596 * 120.06377 * 180.27395 * 20 6 5 22 22 C 1.37892 * 119.87271 * 0.25351 * 20 6 5 23 23 H 1.09001 * 109.46673 * 300.00408 * 1 2 3 24 24 H 1.08998 * 109.47168 * 59.99971 * 1 2 3 25 25 H 1.08998 * 109.47303 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.93909 * 359.97407 * 4 3 2 27 27 H 1.08007 * 120.03658 * 180.27727 * 5 4 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 29 29 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 30 30 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 31 31 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 32 32 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 33 33 H 0.96999 * 120.00239 * 180.02562 * 15 14 12 34 34 H 1.08007 * 119.95903 * 180.02562 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2858 2.3741 0.0005 5 6 1.9060 3.6029 0.0063 6 6 3.3017 3.6796 0.0004 7 6 3.9704 4.9947 0.0009 8 8 5.1846 5.0593 0.0009 9 7 3.2354 6.1244 0.0013 10 6 3.8994 7.4302 0.0079 11 6 2.8448 8.5387 0.0140 12 6 3.5278 9.8820 0.0201 13 1 4.6063 9.9393 0.0202 14 6 2.7759 11.0376 0.0257 15 7 1.4626 10.9678 0.0262 16 14 3.6227 12.7028 0.0341 17 1 4.4712 12.8326 -1.1776 18 1 2.5990 13.7785 0.0398 19 1 4.4708 12.8207 1.2473 20 6 4.0623 2.5060 -0.0001 21 17 5.7961 2.5933 -0.0001 22 6 3.4324 1.2794 -0.0001 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.2075 2.3145 0.0005 27 1 1.3148 4.5068 0.0112 28 1 2.2667 6.0729 0.0017 29 1 4.5224 7.5166 0.8982 30 1 4.5218 7.5259 -0.8817 31 1 2.2219 8.4523 -0.8762 32 1 2.2223 8.4431 0.9038 33 1 0.9337 11.7809 0.0298 34 1 4.0185 0.3721 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612061113.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:23 Heat of formation + Delta-G solvation = -77.238678 kcal Electronic energy + Delta-G solvation = -18965.032378 eV Core-core repulsion = 15695.340162 eV Total energy + Delta-G solvation = -3269.692217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.54506 -40.44316 -38.39637 -37.25077 -36.55637 -34.83351 -32.61245 -31.72784 -30.86962 -28.35746 -26.76333 -24.59792 -23.71252 -22.71574 -21.58224 -19.56356 -18.72920 -18.34970 -17.62140 -16.80670 -16.50033 -16.42261 -16.39428 -16.19753 -15.48074 -15.02187 -15.00727 -14.53771 -14.25989 -14.01238 -13.82660 -13.21647 -13.08807 -12.91817 -12.75999 -12.55336 -12.29262 -12.21827 -11.97764 -11.87981 -11.60969 -11.43416 -10.58875 -10.58167 -10.05240 -10.01593 -9.40087 -8.23201 -6.33205 -0.32712 0.03357 1.01537 1.42563 1.44592 1.52502 1.79075 2.16312 2.31725 2.46003 2.63439 3.11629 3.53773 3.70995 3.85613 3.99117 4.17742 4.39887 4.44858 4.49049 4.51690 4.62781 4.80168 4.83122 4.87833 5.02960 5.06995 5.27149 5.30629 5.50267 5.60024 5.79804 6.17524 6.22306 6.61172 6.79489 7.25843 7.35849 8.88391 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024355 B = 0.003417 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.392222 B = 8191.486136 C = 9315.115343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.170 3.830 4 C -0.203 4.203 5 C -0.027 4.027 6 C -0.187 4.187 7 C 0.545 3.455 8 O -0.563 6.563 9 N -0.713 5.713 10 C 0.143 3.857 11 C 0.024 3.976 12 C -0.548 4.548 13 H 0.058 0.942 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.963 3.037 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.269 1.269 20 C 0.039 3.961 21 Cl -0.043 7.043 22 C -0.163 4.163 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.123 0.877 26 H 0.176 0.824 27 H 0.159 0.841 28 H 0.408 0.592 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.266 0.734 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.427 -23.222 -0.052 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.122 3.878 4 C -0.221 4.221 5 C -0.046 4.046 6 C -0.191 4.191 7 C 0.333 3.667 8 O -0.443 6.443 9 N -0.364 5.364 10 C 0.020 3.980 11 C -0.014 4.014 12 C -0.587 4.587 13 H 0.076 0.924 14 C -0.190 4.190 15 N -0.565 5.565 16 Si 0.787 3.213 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.194 1.194 20 C 0.011 3.989 21 Cl -0.013 7.013 22 C -0.182 4.182 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.141 0.859 26 H 0.193 0.807 27 H 0.176 0.824 28 H 0.245 0.755 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.495 -23.237 -0.052 23.668 hybrid contribution -0.020 1.201 0.007 1.202 sum -4.515 -22.036 -0.046 22.493 Atomic orbital electron populations 1.23542 0.75343 1.06284 1.03096 1.86052 1.24293 1.25686 1.87243 1.19073 0.91310 0.85429 0.91965 1.21595 1.02398 0.90529 1.07570 1.21358 0.91299 0.99685 0.92258 1.19676 0.94807 0.91675 1.12929 1.18471 0.86917 0.84667 0.76633 1.90818 1.14547 1.87828 1.51096 1.46012 1.10786 1.05491 1.74153 1.21231 0.95893 0.81024 0.99893 1.19129 0.93812 0.91962 0.96472 1.21443 0.93545 0.92038 1.51643 0.92412 1.25832 0.95510 1.03229 0.94412 1.70037 1.05695 1.29791 1.50937 0.85534 0.78222 0.78436 0.79076 1.19430 1.20506 1.19445 1.20762 0.85888 0.93414 0.98807 1.98413 1.08312 1.98575 1.96049 1.20258 0.92685 0.96797 1.08451 0.90885 0.90877 0.85880 0.80693 0.82369 0.75520 0.93500 0.93489 0.97133 0.97135 0.92517 0.82490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -4.75 10.48 -90.28 -0.95 -5.70 16 3 C 0.17 3.04 6.69 22.63 0.15 3.19 16 4 C -0.20 -3.14 9.01 22.33 0.20 -2.94 16 5 C -0.03 -0.55 9.53 22.50 0.21 -0.34 16 6 C -0.19 -5.27 5.88 -20.06 -0.12 -5.38 16 7 C 0.54 19.60 7.76 86.69 0.67 20.27 16 8 O -0.56 -24.05 13.96 -4.01 -0.06 -24.11 16 9 N -0.71 -25.29 5.51 -466.26 -2.57 -27.86 16 10 C 0.14 6.22 5.61 86.38 0.48 6.71 16 11 C 0.02 1.19 5.09 29.85 0.15 1.34 16 12 C -0.55 -30.64 9.11 25.60 0.23 -30.41 16 13 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 14 C 0.01 0.51 5.46 84.65 0.46 0.97 16 15 N -0.93 -53.75 13.29 21.45 0.28 -53.47 16 16 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C 0.04 1.07 6.35 22.58 0.14 1.22 16 21 Cl -0.04 -1.31 26.01 -2.72 -0.07 -1.38 16 22 C -0.16 -3.49 9.75 22.35 0.22 -3.28 16 23 H 0.07 0.31 7.65 -2.39 -0.02 0.29 16 24 H 0.07 0.31 7.65 -2.39 -0.02 0.29 16 25 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 26 H 0.18 1.44 6.27 -2.91 -0.02 1.42 16 27 H 0.16 2.58 6.40 -2.91 -0.02 2.56 16 28 H 0.41 12.01 6.49 -92.71 -0.60 11.41 16 29 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 34 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -70.05 309.42 3.13 -66.92 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.53 Total: 7.48 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 3.93 Total: -7.48 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -2.28 Total: -81.33 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -1.00 Total: -29.80 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.07 Total: -1.38 kcal Total: -70.05 3.13 -66.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612061113.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.323 kcal (2) G-P(sol) polarization free energy of solvation -70.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds