Wall clock time and date at job start Tue Mar 31 2020 06:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38909 * 120.74841 * 2 1 4 4 C 1.38027 * 119.33986 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.56468 * 179.97438 * 4 3 2 6 6 N 1.31956 * 120.86638 * 359.97438 * 4 3 2 7 7 C 1.32472 * 121.61090 * 359.74786 * 6 4 3 8 8 S 1.76194 * 119.70925 * 180.26880 * 7 6 4 9 9 C 1.81395 * 103.00172 * 0.27333 * 8 7 6 10 10 C 1.53004 * 109.47045 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.47256 * 179.97438 * 10 9 8 12 12 S 1.80993 * 109.47183 * 180.02562 * 11 10 9 13 13 C 1.76202 * 99.99904 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00049 * 359.97438 * 13 12 11 15 15 C 1.38804 * 119.99893 * 179.97438 * 13 12 11 16 16 N 1.31630 * 120.00100 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99967 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46962 * 60.00235 * 17 15 13 19 19 H 1.48493 * 109.47173 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46994 * 300.00421 * 17 15 13 21 21 C 1.38274 * 120.73937 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.46725 * 269.98330 * 1 2 3 23 23 H 1.09006 * 109.46723 * 29.97414 * 1 2 3 24 24 H 1.08994 * 109.47667 * 149.97932 * 1 2 3 25 25 H 1.08005 * 120.32653 * 359.97438 * 3 2 1 26 26 H 1.09004 * 109.46950 * 89.99846 * 5 4 3 27 27 H 1.08999 * 109.47111 * 209.99826 * 5 4 3 28 28 H 1.08997 * 109.47631 * 330.00195 * 5 4 3 29 29 H 1.09001 * 109.47223 * 299.99514 * 9 8 7 30 30 H 1.08993 * 109.47332 * 60.00101 * 9 8 7 31 31 H 1.08994 * 109.47408 * 299.99935 * 10 9 8 32 32 H 1.09007 * 109.46892 * 59.99757 * 10 9 8 33 33 H 1.09002 * 109.46824 * 300.00062 * 11 10 9 34 34 H 1.08994 * 109.46709 * 59.99820 * 11 10 9 35 35 H 0.96995 * 120.00167 * 179.97438 * 16 15 13 36 36 H 1.08002 * 120.45161 * 359.97099 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2172 1.1938 0.0000 4 6 3.5971 1.1599 -0.0005 5 6 4.3726 2.4520 -0.0011 6 7 4.2460 0.0109 -0.0005 7 6 3.6052 -1.1485 0.0049 8 16 4.5221 -2.6530 0.0118 9 6 6.2437 -2.0817 0.0174 10 6 7.1821 -3.2901 0.0244 11 6 8.6343 -2.8083 0.0284 12 16 9.7443 -4.2378 0.0359 13 6 11.3025 -3.4153 0.0403 14 1 11.3434 -2.3361 0.0377 15 6 12.4774 -4.1543 0.0471 16 7 12.4275 -5.4697 0.0497 17 14 14.1294 -3.2823 0.0510 18 1 14.2356 -2.4286 1.2614 19 1 15.2207 -4.2893 0.0576 20 1 14.2450 -2.4356 -1.1635 21 6 2.2138 -1.1885 -0.0005 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3633 0.8903 -0.5135 24 1 -0.3634 -0.8897 -0.5141 25 1 1.6948 2.1391 -0.0004 26 1 4.5600 2.7638 1.0264 27 1 5.3225 2.3054 -0.5153 28 1 3.7964 3.2215 -0.5148 29 1 6.4303 -1.4815 -0.8732 30 1 6.4232 -1.4777 0.9067 31 1 6.9955 -3.8899 0.9151 32 1 7.0027 -3.8946 -0.8648 33 1 8.8206 -2.2087 -0.8626 34 1 8.8139 -2.2036 0.9173 35 1 13.2486 -5.9861 0.0541 36 1 1.6933 -2.1348 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615683905.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:55 Heat of formation + Delta-G solvation = -0.508722 kcal Electronic energy + Delta-G solvation = -16299.199694 eV Core-core repulsion = 13613.464410 eV Total energy + Delta-G solvation = -2685.735284 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.37398 -34.52228 -34.20773 -32.89537 -32.41959 -28.33478 -27.70221 -27.00307 -25.46932 -23.75340 -21.47733 -21.17632 -17.47892 -17.36574 -16.77816 -16.23688 -15.30896 -14.92525 -14.85746 -14.78636 -14.11981 -13.73106 -13.66323 -13.21792 -13.01482 -12.89421 -12.87287 -12.52556 -12.37641 -12.07414 -11.75149 -11.48563 -11.04776 -10.88918 -10.65941 -10.55836 -10.32541 -9.91065 -9.74682 -9.56213 -9.54630 -9.04336 -8.31595 -7.60641 -6.52850 -6.21832 -3.92509 0.79769 0.99894 1.42520 2.29228 3.23031 3.24420 3.28919 3.42091 3.57807 4.16168 4.22880 4.31684 4.70376 4.82327 4.91678 5.07243 5.13396 5.15448 5.16128 5.23305 5.29062 5.34659 5.39861 5.44116 5.49983 5.65839 5.74850 5.81613 5.81857 6.02290 6.02478 6.27157 6.40548 6.49229 6.69415 7.61386 7.63692 8.37467 9.24240 10.86328 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.034255 B = 0.002744 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.211120 B =10199.993018 C =10980.843382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.025 4.025 3 C -0.188 4.188 4 C 0.147 3.853 5 C -0.105 4.105 6 N -0.494 5.494 7 C 0.135 3.865 8 S -0.080 6.080 9 C -0.083 4.083 10 C -0.086 4.086 11 C -0.107 4.107 12 S -0.129 6.129 13 C -0.517 4.517 14 H 0.072 0.928 15 C 0.071 3.929 16 N -0.870 5.870 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C -0.163 4.163 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.133 0.867 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.268 0.732 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.164 12.978 -0.057 26.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.034 4.034 3 C -0.211 4.211 4 C 0.006 3.994 5 C -0.162 4.162 6 N -0.208 5.208 7 C -0.114 4.114 8 S 0.164 5.836 9 C -0.233 4.233 10 C -0.126 4.126 11 C -0.258 4.258 12 S 0.099 5.901 13 C -0.665 4.665 14 H 0.091 0.909 15 C -0.138 4.138 16 N -0.505 5.505 17 Si 0.745 3.255 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.190 4.190 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.151 0.849 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.668 10.478 -0.061 24.972 hybrid contribution 0.880 3.142 0.017 3.263 sum -21.788 13.619 -0.044 25.694 Atomic orbital electron populations 1.20826 0.89965 1.03406 1.02982 1.20208 0.96637 0.92514 0.94037 1.21734 0.94596 0.98604 1.06213 1.21262 0.91338 0.93694 0.93079 1.20733 1.00466 0.91768 1.03242 1.67957 1.39832 0.97209 1.15827 1.23169 0.93826 0.96710 0.97683 1.85619 1.03036 1.04427 1.90544 1.23613 0.91017 1.02150 1.06536 1.21104 0.92409 0.95321 1.03784 1.23235 0.96120 1.03225 1.03211 1.84637 1.00075 1.08527 1.96878 1.22645 0.90556 0.94658 1.58638 0.90945 1.25018 0.99208 0.94974 0.94591 1.70010 1.28647 1.04729 1.47139 0.86213 0.81383 0.79019 0.78856 1.19926 1.20813 1.19930 1.21502 0.92871 0.99133 1.05489 0.90379 0.90941 0.90858 0.84884 0.90247 0.90289 0.90642 0.89126 0.89145 0.90607 0.90610 0.91849 0.91849 0.92234 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.06 36.01 0.36 -0.30 16 2 C -0.02 -0.23 5.91 -104.36 -0.62 -0.84 16 3 C -0.19 -1.74 9.44 -39.41 -0.37 -2.11 16 4 C 0.15 1.64 6.78 -82.62 -0.56 1.08 16 5 C -0.10 -0.87 10.17 36.01 0.37 -0.50 16 6 N -0.49 -6.80 9.34 -8.34 -0.08 -6.88 16 7 C 0.13 1.81 7.00 -16.92 -0.12 1.69 16 8 S -0.08 -1.09 21.91 -107.50 -2.36 -3.45 16 9 C -0.08 -1.23 5.20 37.16 0.19 -1.04 16 10 C -0.09 -1.45 5.22 -26.73 -0.14 -1.59 16 11 C -0.11 -2.20 5.67 37.16 0.21 -1.99 16 12 S -0.13 -3.42 21.44 -107.50 -2.30 -5.72 16 13 C -0.52 -14.94 9.50 30.94 0.29 -14.65 16 14 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 15 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 16 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 17 Si 0.92 21.70 29.55 -169.99 -5.02 16.67 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 C -0.16 -1.80 9.54 -39.21 -0.37 -2.17 16 22 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 24 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 25 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.09 1.36 8.14 -51.92 -0.42 0.93 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.29 8.14 -51.91 -0.42 0.86 16 34 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -32.25 336.55 -10.26 -42.52 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.46 Total: -2.29 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -0.85 Total: -20.49 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.66 Total: -32.31 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -4.51 SS G_CDS: -4.66 Total: -9.17 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.25 -10.26 -42.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615683905.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.007 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds