Wall clock time and date at job start Tue Mar 31 2020 06:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38909 * 120.74841 * 2 1 4 4 C 1.38027 * 119.33986 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.56468 * 179.97438 * 4 3 2 6 6 N 1.31956 * 120.86638 * 359.97438 * 4 3 2 7 7 C 1.32472 * 121.61090 * 359.74786 * 6 4 3 8 8 S 1.76194 * 119.70925 * 180.26880 * 7 6 4 9 9 C 1.81395 * 103.00172 * 0.27333 * 8 7 6 10 10 C 1.53004 * 109.47045 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.47256 * 179.97438 * 10 9 8 12 12 S 1.80993 * 109.47183 * 180.02562 * 11 10 9 13 13 C 1.76202 * 99.99904 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00049 * 359.97438 * 13 12 11 15 15 C 1.38804 * 119.99893 * 179.97438 * 13 12 11 16 16 N 1.31630 * 120.00100 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99967 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46962 * 60.00235 * 17 15 13 19 19 H 1.48493 * 109.47173 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46994 * 300.00421 * 17 15 13 21 21 C 1.38274 * 120.73937 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.46725 * 269.98330 * 1 2 3 23 23 H 1.09006 * 109.46723 * 29.97414 * 1 2 3 24 24 H 1.08994 * 109.47667 * 149.97932 * 1 2 3 25 25 H 1.08005 * 120.32653 * 359.97438 * 3 2 1 26 26 H 1.09004 * 109.46950 * 89.99846 * 5 4 3 27 27 H 1.08999 * 109.47111 * 209.99826 * 5 4 3 28 28 H 1.08997 * 109.47631 * 330.00195 * 5 4 3 29 29 H 1.09001 * 109.47223 * 299.99514 * 9 8 7 30 30 H 1.08993 * 109.47332 * 60.00101 * 9 8 7 31 31 H 1.08994 * 109.47408 * 299.99935 * 10 9 8 32 32 H 1.09007 * 109.46892 * 59.99757 * 10 9 8 33 33 H 1.09002 * 109.46824 * 300.00062 * 11 10 9 34 34 H 1.08994 * 109.46709 * 59.99820 * 11 10 9 35 35 H 0.96995 * 120.00167 * 179.97438 * 16 15 13 36 36 H 1.08002 * 120.45161 * 359.97099 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2172 1.1938 0.0000 4 6 3.5971 1.1599 -0.0005 5 6 4.3726 2.4520 -0.0011 6 7 4.2460 0.0109 -0.0005 7 6 3.6052 -1.1485 0.0049 8 16 4.5221 -2.6530 0.0118 9 6 6.2437 -2.0817 0.0174 10 6 7.1821 -3.2901 0.0244 11 6 8.6343 -2.8083 0.0284 12 16 9.7443 -4.2378 0.0359 13 6 11.3025 -3.4153 0.0403 14 1 11.3434 -2.3361 0.0377 15 6 12.4774 -4.1543 0.0471 16 7 12.4275 -5.4697 0.0497 17 14 14.1294 -3.2823 0.0510 18 1 14.2356 -2.4286 1.2614 19 1 15.2207 -4.2893 0.0576 20 1 14.2450 -2.4356 -1.1635 21 6 2.2138 -1.1885 -0.0005 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3633 0.8903 -0.5135 24 1 -0.3634 -0.8897 -0.5141 25 1 1.6948 2.1391 -0.0004 26 1 4.5600 2.7638 1.0264 27 1 5.3225 2.3054 -0.5153 28 1 3.7964 3.2215 -0.5148 29 1 6.4303 -1.4815 -0.8732 30 1 6.4232 -1.4777 0.9067 31 1 6.9955 -3.8899 0.9151 32 1 7.0027 -3.8946 -0.8648 33 1 8.8206 -2.2087 -0.8626 34 1 8.8139 -2.2036 0.9173 35 1 13.2486 -5.9861 0.0541 36 1 1.6933 -2.1348 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615683905.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:55 Heat of formation + Delta-G solvation = -17.881088 kcal Electronic energy + Delta-G solvation = -16299.953016 eV Core-core repulsion = 13613.464410 eV Total energy + Delta-G solvation = -2686.488606 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.17257 -35.78809 -35.10327 -34.60903 -33.66990 -29.08134 -28.52615 -28.29856 -27.58203 -24.65023 -22.73724 -22.06649 -19.58922 -18.29426 -17.63890 -17.03678 -16.90462 -16.64287 -16.34249 -15.72984 -15.53983 -14.93091 -14.58666 -14.14949 -14.11844 -13.83673 -13.55412 -13.46332 -13.32947 -13.31114 -13.14988 -12.92258 -12.83530 -12.51269 -12.29284 -12.02337 -11.54301 -11.40175 -11.14669 -10.67938 -10.57585 -10.38340 -10.36971 -8.69693 -8.61472 -8.38319 -6.15369 -0.02539 0.22697 0.38343 1.18411 1.31483 1.40586 1.47397 1.73171 2.26660 2.61257 2.95839 3.28753 3.40534 3.69451 3.81288 3.96275 4.01706 4.10923 4.14789 4.24581 4.31043 4.50550 4.59822 4.61752 4.72777 4.73875 4.76599 4.80581 4.97085 4.98190 5.09562 5.14130 5.22805 5.33654 5.38605 5.70299 6.16982 6.79929 7.03537 8.70941 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.034255 B = 0.002744 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.211120 B =10199.993018 C =10980.843382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.025 4.025 3 C -0.181 4.181 4 C 0.125 3.875 5 C -0.102 4.102 6 N -0.525 5.525 7 C 0.108 3.892 8 S -0.085 6.085 9 C -0.071 4.071 10 C -0.074 4.074 11 C -0.083 4.083 12 S -0.191 6.191 13 C -0.540 4.540 14 H 0.073 0.927 15 C 0.015 3.985 16 N -0.907 5.907 17 Si 0.995 3.005 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.264 1.264 21 C -0.171 4.171 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.167 0.833 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.272 0.728 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.683 15.207 -0.058 28.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.034 4.034 3 C -0.203 4.203 4 C -0.015 4.015 5 C -0.159 4.159 6 N -0.240 5.240 7 C -0.140 4.140 8 S 0.157 5.843 9 C -0.222 4.222 10 C -0.114 4.114 11 C -0.234 4.234 12 S 0.038 5.962 13 C -0.688 4.688 14 H 0.091 0.909 15 C -0.190 4.190 16 N -0.543 5.543 17 Si 0.816 3.184 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.189 1.189 21 C -0.197 4.197 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.098 0.902 25 H 0.185 0.815 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -24.203 12.713 -0.062 27.339 hybrid contribution 1.164 2.543 0.018 2.796 sum -23.040 15.256 -0.044 27.633 Atomic orbital electron populations 1.20911 0.87168 1.04697 1.04100 1.20672 0.98553 0.91745 0.92431 1.22146 0.93943 1.00127 1.04103 1.21812 0.92744 0.93731 0.93216 1.20799 0.99958 0.91265 1.03880 1.67883 1.41066 0.98082 1.17002 1.23191 0.94604 0.96273 0.99912 1.85466 1.01794 1.05626 1.91380 1.23305 0.91912 1.00741 1.06205 1.20943 0.90561 0.96127 1.03750 1.23133 0.96613 1.00335 1.03313 1.84626 1.01549 1.13008 1.97057 1.23003 0.91737 0.94916 1.59113 0.90856 1.26087 1.03464 0.95748 0.93698 1.70144 1.29950 1.06409 1.47806 0.85054 0.75968 0.77965 0.79365 1.18907 1.19869 1.18923 1.21748 0.92060 1.00646 1.05251 0.89147 0.89143 0.90156 0.81547 0.89534 0.91715 0.87904 0.89448 0.89454 0.90652 0.90664 0.91650 0.91644 0.91892 0.83306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.06 71.24 0.72 -0.18 16 2 C -0.02 -0.39 5.91 -19.69 -0.12 -0.51 16 3 C -0.18 -2.84 9.44 22.38 0.21 -2.63 16 4 C 0.13 2.62 6.78 42.49 0.29 2.91 16 5 C -0.10 -1.52 10.17 71.24 0.72 -0.80 16 6 N -0.53 -14.32 9.34 -180.30 -1.68 -16.00 16 7 C 0.11 2.87 7.00 84.83 0.59 3.46 16 8 S -0.09 -2.35 21.91 -56.49 -1.24 -3.59 16 9 C -0.07 -2.13 5.20 71.98 0.37 -1.76 16 10 C -0.07 -2.53 5.22 30.60 0.16 -2.37 16 11 C -0.08 -3.47 5.67 71.98 0.41 -3.06 16 12 S -0.19 -10.37 21.44 -56.49 -1.21 -11.59 16 13 C -0.54 -31.69 9.50 67.96 0.65 -31.05 16 14 H 0.07 4.14 7.80 -2.91 -0.02 4.11 16 15 C 0.02 0.87 5.49 84.86 0.47 1.33 16 16 N -0.91 -55.36 13.22 21.65 0.29 -55.07 16 17 Si 0.99 44.42 29.55 68.60 2.03 46.45 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 21 C -0.17 -3.54 9.54 22.51 0.21 -3.33 16 22 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.09 0.43 8.10 -2.38 -0.02 0.41 16 24 H 0.08 0.56 8.10 -2.39 -0.02 0.54 16 25 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 28 H 0.10 0.92 8.08 -2.39 -0.02 0.90 16 29 H 0.09 2.65 8.14 -2.39 -0.02 2.64 16 30 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 33 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.06 2.68 8.14 -2.40 -0.02 2.66 16 35 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 36 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -70.85 336.55 3.91 -66.93 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.05 Total: 10.83 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 4.69 Total: -37.96 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: -1.40 Total: -71.07 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -12.72 SS G_CDS: -2.45 Total: -15.17 kcal Total: -70.85 3.91 -66.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615683905.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.052 kcal (2) G-P(sol) polarization free energy of solvation -70.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds