Wall clock time and date at job start Tue Mar 31 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00168 * 2 1 4 4 H 1.48498 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46785 * 299.99980 * 3 2 1 6 6 H 1.48495 * 109.47114 * 59.99635 * 3 2 1 7 7 C 1.37876 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00725 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99511 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46633 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46567 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47251 * 304.99681 * 11 10 9 13 13 N 1.46903 * 109.47026 * 65.00404 * 11 10 9 14 14 C 1.50700 * 109.46744 * 185.00116 * 11 10 9 15 15 O 1.21287 * 119.99893 * 259.99775 * 14 11 10 16 16 N 1.34777 * 120.00168 * 80.00220 * 14 11 10 17 17 C 1.40007 * 120.00086 * 185.26633 * 16 14 11 18 18 C 1.39299 * 120.47033 * 32.65719 * 17 16 14 19 19 C 1.38458 * 118.37251 * 180.29666 * 18 17 16 20 20 C 1.38431 * 119.22659 * 359.45775 * 19 18 17 21 21 Cl 1.73598 * 119.56056 * 180.27394 * 20 19 18 22 22 N 1.31941 * 120.88040 * 0.55602 * 20 19 18 23 23 C 1.31856 * 121.77952 * 359.71888 * 22 20 19 24 24 H 0.97007 * 120.00146 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47151 * 60.00170 * 9 7 2 26 26 H 1.08998 * 109.47054 * 299.99395 * 9 7 2 27 27 H 1.08997 * 109.46926 * 60.00384 * 10 9 7 28 28 H 1.08998 * 109.47193 * 299.99661 * 10 9 7 29 29 H 1.00894 * 110.99852 * 59.99919 * 13 11 10 30 30 H 1.00905 * 110.99443 * 183.95336 * 13 11 10 31 31 H 0.97004 * 119.99770 * 5.26362 * 16 14 11 32 32 H 1.07997 * 120.81599 * 0.02562 * 18 17 16 33 33 H 1.07999 * 120.38672 * 179.71879 * 19 18 17 34 34 H 1.08000 * 119.66080 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 1 0.7883 -5.0068 0.8433 13 7 0.7280 -5.1188 -1.2538 14 6 2.4548 -6.1298 0.1250 15 8 2.7862 -6.7537 -0.8608 16 7 2.9580 -6.4585 1.3313 17 6 3.9455 -7.4459 1.4324 18 6 4.8784 -7.6190 0.4126 19 6 5.8321 -8.6127 0.5549 20 6 5.8344 -9.3880 1.7017 21 17 7.0306 -10.6316 1.8923 22 7 4.9362 -9.1981 2.6493 23 6 4.0083 -8.2666 2.5500 24 1 -0.4851 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6043 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 1.3476 -5.1034 -2.0500 30 1 0.1636 -5.9552 -1.2509 31 1 2.6361 -6.0110 2.1295 32 1 4.8558 -6.9963 -0.4695 33 1 6.5681 -8.7781 -0.2179 34 1 3.2900 -8.1406 3.3467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691580450.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:34 Heat of formation + Delta-G solvation = -17.142029 kcal Electronic energy + Delta-G solvation = -19032.915967 eV Core-core repulsion = 15798.122487 eV Total energy + Delta-G solvation = -3234.793479 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.16164 -39.63330 -36.93887 -35.62762 -35.17869 -32.93283 -32.59093 -30.35457 -30.11747 -26.63924 -24.50671 -24.22212 -22.85989 -20.88654 -20.07222 -18.30419 -17.55851 -17.43231 -16.58877 -16.30101 -15.57333 -15.05756 -14.92860 -14.60854 -14.39754 -14.28063 -13.68864 -13.56390 -12.89731 -12.44834 -12.19846 -12.15337 -11.69874 -11.59035 -10.99758 -10.96735 -10.87535 -10.65319 -10.44756 -10.14051 -9.95422 -9.82686 -9.49912 -9.08357 -8.55487 -8.53382 -8.32954 -6.01384 -4.04044 0.52543 0.85375 1.54722 2.37094 2.77702 3.29136 3.34990 3.37228 3.40463 4.13044 4.40713 4.45561 4.48377 4.58873 4.73610 4.92774 5.19127 5.30444 5.35151 5.41866 5.60088 5.68407 5.83140 6.25315 6.33608 6.47582 6.91213 7.01491 7.28607 7.35302 7.60365 7.66904 7.84280 7.87837 8.03251 8.39024 9.03900 9.59891 11.09446 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029111 B = 0.002982 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.620275 B = 9388.658727 C = 9853.693554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.031 3.969 10 C -0.096 4.096 11 C 0.082 3.918 12 H 0.104 0.896 13 N -0.804 5.804 14 C 0.484 3.516 15 O -0.531 6.531 16 N -0.668 5.668 17 C 0.111 3.889 18 C -0.069 4.069 19 C -0.130 4.130 20 C 0.149 3.851 21 Cl -0.036 7.036 22 N -0.458 5.458 23 C 0.091 3.909 24 H 0.260 0.740 25 H 0.036 0.964 26 H 0.014 0.986 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.349 0.651 30 H 0.336 0.664 31 H 0.419 0.581 32 H 0.157 0.843 33 H 0.148 0.852 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.544 -17.968 3.829 20.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.563 4.563 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.135 4.135 11 C -0.034 4.034 12 H 0.122 0.878 13 N -0.332 5.332 14 C 0.272 3.728 15 O -0.406 6.406 16 N -0.314 5.314 17 C 0.013 3.987 18 C -0.097 4.097 19 C -0.151 4.151 20 C -0.016 4.016 21 Cl -0.007 7.007 22 N -0.169 5.169 23 C -0.069 4.069 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.164 0.836 30 H 0.148 0.852 31 H 0.257 0.743 32 H 0.174 0.826 33 H 0.166 0.834 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.343 -18.167 4.026 20.393 hybrid contribution 0.955 0.615 -0.357 1.191 sum 9.299 -17.552 3.669 20.199 Atomic orbital electron populations 1.69976 1.05969 1.26436 1.50694 1.24989 0.94810 0.99126 0.95365 0.86590 0.80095 0.84019 0.77599 1.19837 1.21015 1.21050 1.21288 0.92933 0.91239 1.50803 0.92902 1.19025 0.93494 0.89726 0.98340 1.21711 0.98990 0.91872 1.00904 1.21936 0.93312 0.92567 0.95617 0.87837 1.58975 1.26724 1.44453 1.03084 1.23296 0.82127 0.85477 0.81917 1.90670 1.60348 1.52671 1.36889 1.43856 1.38339 1.37684 1.11534 1.18975 0.90665 0.92206 0.96898 1.21675 0.91015 0.97399 0.99659 1.21771 1.00265 0.95609 0.97480 1.21554 0.93861 0.93844 0.92312 1.98398 1.52870 1.51804 1.97649 1.66942 1.02799 1.18259 1.28860 1.22483 0.96684 0.90175 0.97589 0.93066 0.94586 0.96744 0.92617 0.92637 0.83612 0.85163 0.74343 0.82582 0.83394 0.81446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.03 0.75 4.86 -27.88 -0.14 0.61 16 10 C -0.10 -1.75 4.78 -26.73 -0.13 -1.88 16 11 C 0.08 1.18 3.15 -68.86 -0.22 0.96 16 12 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 13 N -0.80 -11.97 8.44 -5.65 -0.05 -12.02 16 14 C 0.48 6.40 6.83 -10.99 -0.08 6.32 16 15 O -0.53 -8.21 13.94 5.55 0.08 -8.14 16 16 N -0.67 -7.02 5.36 -9.76 -0.05 -7.08 16 17 C 0.11 1.23 6.31 -83.52 -0.53 0.70 16 18 C -0.07 -0.81 8.77 -39.11 -0.34 -1.15 16 19 C -0.13 -1.35 9.87 -39.43 -0.39 -1.74 16 20 C 0.15 1.68 7.27 -17.43 -0.13 1.56 16 21 Cl -0.04 -0.36 29.10 -51.86 -1.51 -1.87 16 22 N -0.46 -5.43 10.33 -10.20 -0.11 -5.53 16 23 C 0.09 0.93 11.12 -17.33 -0.19 0.73 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.04 0.94 7.75 -51.93 -0.40 0.54 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.35 5.26 8.58 -39.29 -0.34 4.92 16 30 H 0.34 4.28 9.06 -39.29 -0.36 3.92 16 31 H 0.42 3.28 8.82 -40.82 -0.36 2.92 16 32 H 0.16 1.95 6.48 -52.49 -0.34 1.61 16 33 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 314.27 15.07 4.74 4.74 Total: -1.00 -31.69 314.27 -7.60 -39.30 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -3.87 Total: 6.73 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.54 Total: -6.87 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.53 Total: -50.01 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.08 Total: -8.14 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.51 Total: -1.87 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.69 -7.60 -39.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691580450.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.153 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds