Wall clock time and date at job start Tue Mar 31 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47130 * 300.00228 * 3 2 1 6 6 H 1.48507 * 109.46925 * 59.99712 * 3 2 1 7 7 C 1.37875 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46963 * 180.02562 * 9 7 2 11 11 N 1.46507 * 109.46773 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99765 * 179.97438 * 11 10 9 13 13 O 1.21588 * 119.99889 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99902 * 179.97438 * 12 11 10 15 15 N 1.40105 * 119.99775 * 0.27790 * 14 12 11 16 16 C 1.39748 * 119.99402 * 179.72199 * 15 14 12 17 17 C 1.38882 * 120.08410 * 359.97438 * 16 15 14 18 18 C 1.38108 * 119.93894 * 180.02562 * 17 16 15 19 19 C 1.38292 * 120.09874 * 0.02562 * 18 17 16 20 20 C 1.38279 * 120.15183 * 0.02562 * 19 18 17 21 21 C 1.38210 * 120.06392 * 359.71842 * 20 19 18 22 22 Cl 1.73600 * 120.04931 * 180.29585 * 21 20 19 23 23 H 0.97000 * 119.99706 * 0.02562 * 1 2 3 24 24 H 1.08992 * 109.47012 * 59.99952 * 9 7 2 25 25 H 1.08997 * 109.46878 * 299.99703 * 9 7 2 26 26 H 1.09000 * 109.47266 * 60.00331 * 10 9 7 27 27 H 1.08997 * 109.46955 * 299.99502 * 10 9 7 28 28 H 0.97004 * 119.99669 * 0.02562 * 11 10 9 29 29 H 0.97001 * 119.99727 * 179.97438 * 14 12 11 30 30 H 0.97000 * 119.99844 * 359.72383 * 15 14 12 31 31 H 1.08005 * 120.02619 * 359.97438 * 17 16 15 32 32 H 1.08000 * 119.95169 * 179.97438 * 18 17 16 33 33 H 1.07998 * 119.92942 * 179.97438 * 19 18 17 34 34 H 1.08006 * 119.96631 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5128 -4.9308 0.0001 12 6 2.1867 -6.0980 -0.0003 13 8 3.4026 -6.0979 -0.0007 14 7 1.5128 -7.2652 0.0008 15 7 0.1118 -7.2652 -0.0036 16 6 -0.5869 -8.4755 -0.0083 17 6 0.1059 -9.6792 -0.0093 18 6 -0.5876 -10.8735 -0.0145 19 6 -1.9705 -10.8725 -0.0193 20 6 -2.6642 -9.6763 -0.0194 21 6 -1.9768 -8.4773 -0.0089 22 17 -2.8481 -6.9758 -0.0013 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5567 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8895 27 1 2.8719 -3.6043 -0.8905 28 1 0.5428 -4.9308 0.0000 29 1 1.9979 -8.1052 0.0001 30 1 -0.3732 -6.4251 -0.0033 31 1 1.1859 -9.6812 -0.0068 32 1 -0.0491 -11.8097 -0.0157 33 1 -2.5100 -11.8081 -0.0238 34 1 -3.7442 -9.6790 -0.0228 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753263204.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:23 Heat of formation + Delta-G solvation = 23.914578 kcal Electronic energy + Delta-G solvation = -18925.540909 eV Core-core repulsion = 15692.527778 eV Total energy + Delta-G solvation = -3233.013131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.33559 -39.33457 -36.63461 -36.34137 -35.02562 -32.90060 -32.05600 -31.02725 -29.48454 -28.17019 -24.91982 -23.26717 -22.46895 -21.41264 -20.58822 -18.78294 -18.64528 -16.69730 -16.39613 -16.27746 -15.53672 -15.35351 -14.62178 -14.54271 -14.43932 -14.27299 -13.94179 -13.65634 -13.38338 -12.33371 -12.26219 -12.17178 -11.66014 -11.59760 -11.24358 -11.10347 -11.08359 -10.66078 -10.42312 -10.30310 -9.65106 -9.57875 -9.30698 -9.11211 -8.67254 -8.42780 -7.46880 -6.12256 -4.15277 0.91479 1.14568 1.77243 2.01200 3.25325 3.27013 3.28073 3.35235 3.40890 3.44506 4.38506 4.39243 4.57466 4.72716 5.02103 5.08996 5.25107 5.31230 5.53209 5.72140 5.93808 6.08113 6.20260 6.29474 6.29591 6.49097 6.65944 6.75567 7.09669 7.27183 7.50247 7.56177 7.85918 8.16449 8.28625 8.64613 8.90728 9.49857 10.99398 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.003454 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.489421 B = 8104.587911 C = 9227.613343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.012 3.988 10 C 0.137 3.863 11 N -0.733 5.733 12 C 0.708 3.292 13 O -0.578 6.578 14 N -0.540 5.540 15 N -0.540 5.540 16 C 0.234 3.766 17 C -0.190 4.190 18 C -0.060 4.060 19 C -0.170 4.170 20 C -0.055 4.055 21 C -0.113 4.113 22 Cl -0.064 7.064 23 H 0.262 0.738 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.389 0.611 29 H 0.428 0.572 30 H 0.427 0.573 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.571 -22.073 -0.031 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.026 4.026 10 C 0.014 3.986 11 N -0.388 5.388 12 C 0.407 3.593 13 O -0.453 6.453 14 N -0.296 5.296 15 N -0.269 5.269 16 C 0.128 3.872 17 C -0.213 4.213 18 C -0.079 4.079 19 C -0.191 4.191 20 C -0.075 4.075 21 C -0.146 4.146 22 Cl -0.035 7.035 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.223 0.777 29 H 0.274 0.726 30 H 0.272 0.728 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.670 -21.532 -0.026 22.266 hybrid contribution -0.243 1.065 -0.005 1.092 sum -5.912 -20.467 -0.031 21.304 Atomic orbital electron populations 1.69963 1.06101 1.26824 1.50319 1.24999 0.94902 0.99459 0.94933 0.86445 0.80166 0.83260 0.77628 1.19546 1.20924 1.20919 1.21055 0.93310 0.90203 1.51406 0.92082 1.19348 0.94247 0.91087 0.97911 1.21725 0.95774 0.79962 1.01103 1.45625 1.09669 1.05637 1.77908 1.15839 0.85083 0.79867 0.78500 1.91000 1.10435 1.84511 1.59361 1.44624 0.93400 1.09001 1.82563 1.43546 0.94228 1.06683 1.82476 1.17391 0.88976 0.85683 0.95187 1.20440 0.99751 0.90467 1.10684 1.20975 0.94244 0.97338 0.95340 1.20893 0.94152 0.97485 1.06576 1.20838 1.00191 0.90017 0.96422 1.20246 0.89454 0.88566 1.16317 1.98390 1.75767 1.31967 1.97388 0.92862 0.95892 0.95904 0.92288 0.92285 0.77746 0.72649 0.72784 0.85504 0.85309 0.85340 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.14 16 10 C 0.14 2.89 5.61 -4.04 -0.02 2.87 16 11 N -0.73 -13.00 5.52 -65.22 -0.36 -13.36 16 12 C 0.71 12.23 8.68 -86.92 -0.75 11.48 16 13 O -0.58 -11.96 17.18 5.29 0.09 -11.87 16 14 N -0.54 -7.10 6.22 27.63 0.17 -6.93 16 15 N -0.54 -6.49 6.41 32.44 0.21 -6.29 16 16 C 0.23 2.52 6.72 -83.73 -0.56 1.96 16 17 C -0.19 -1.71 9.48 -39.39 -0.37 -2.09 16 18 C -0.06 -0.44 10.04 -39.61 -0.40 -0.84 16 19 C -0.17 -1.23 10.04 -39.55 -0.40 -1.63 16 20 C -0.06 -0.47 9.82 -39.58 -0.39 -0.85 16 21 C -0.11 -1.17 6.34 -39.31 -0.25 -1.42 16 22 Cl -0.06 -0.70 27.60 -51.86 -1.43 -2.13 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.39 6.17 6.39 -40.82 -0.26 5.91 16 29 H 0.43 4.74 6.71 -182.59 -1.22 3.51 16 30 H 0.43 5.27 5.38 -182.59 -0.98 4.29 16 31 H 0.13 0.98 6.20 -52.48 -0.33 0.65 16 32 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 33 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -31.46 310.92 -9.91 -41.38 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.29 Total: 6.97 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.70 Total: -3.49 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.76 Total: -51.81 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.43 Total: -2.13 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.46 -9.91 -41.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753263204.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.290 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds