Wall clock time and date at job start Tue Mar 31 2020 05:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.46751 * 2 1 4 4 C 1.50700 * 109.47282 * 119.99914 * 2 1 3 5 5 H 1.07999 * 120.00235 * 120.00177 * 4 2 1 6 6 C 1.37879 * 119.99816 * 300.00383 * 4 2 1 7 7 N 1.31509 * 120.00340 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99765 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47388 * 90.00033 * 8 6 4 10 10 H 1.48502 * 109.47175 * 210.00090 * 8 6 4 11 11 H 1.48502 * 109.47361 * 329.99787 * 8 6 4 12 12 N 1.46497 * 109.47376 * 240.00303 * 2 1 3 13 13 C 1.46499 * 119.99893 * 299.99794 * 12 2 1 14 14 C 1.34776 * 120.00319 * 119.99980 * 12 2 1 15 15 O 1.21600 * 119.99600 * 359.97438 * 14 12 2 16 16 C 1.47461 * 120.00365 * 180.02562 * 14 12 2 17 17 C 1.40199 * 120.20375 * 90.26831 * 16 14 12 18 18 O 1.35654 * 120.14286 * 0.02562 * 17 16 14 19 19 C 1.38636 * 119.71315 * 180.28397 * 17 16 14 20 20 C 1.38139 * 120.12232 * 359.71783 * 19 17 16 21 21 C 1.38439 * 120.41003 * 0.02562 * 20 19 17 22 22 C 1.38012 * 120.28727 * 359.97438 * 21 20 19 23 23 Cl 1.73599 * 120.06292 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.47654 * 299.99612 * 1 2 3 25 25 H 1.09003 * 109.47211 * 60.00135 * 1 2 3 26 26 H 1.09002 * 109.47018 * 179.97438 * 1 2 3 27 27 H 0.96997 * 120.00423 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47016 * 269.99988 * 13 12 2 29 29 H 1.08994 * 109.47119 * 29.99672 * 13 12 2 30 30 H 1.09001 * 109.47227 * 150.00198 * 13 12 2 31 31 H 0.96696 * 114.00326 * 270.27977 * 18 17 16 32 32 H 1.08002 * 119.93720 * 179.74597 * 19 17 16 33 33 H 1.07994 * 119.79549 * 179.97438 * 20 19 17 34 34 H 1.08002 * 119.85548 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6303 -0.5439 4.4119 10 1 1.3444 -0.9490 5.1123 11 1 2.4881 -2.5653 3.7122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.0865 1.1288 -1.8910 16 6 3.2843 -0.7304 -3.2876 17 6 2.5326 -0.7078 -4.4708 18 8 1.3494 -0.0458 -4.5136 19 6 3.0011 -1.3695 -5.5954 20 6 4.2063 -2.0432 -5.5515 21 6 4.9553 -2.0643 -4.3874 22 6 4.5050 -1.4113 -3.2580 23 17 5.4486 -1.4422 -1.8012 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7087 1.1613 3.4844 28 1 2.4158 -2.7376 -0.9717 29 1 0.6905 -2.3002 -0.9847 30 1 1.6239 -2.2851 -2.5002 31 1 0.5865 -0.5873 -4.2689 32 1 2.4230 -1.3579 -6.5075 33 1 4.5661 -2.5572 -6.4304 34 1 5.8962 -2.5941 -4.3629 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769764982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:20 Heat of formation + Delta-G solvation = -52.156739 kcal Electronic energy + Delta-G solvation = -20496.446096 eV Core-core repulsion = 17227.841514 eV Total energy + Delta-G solvation = -3268.604582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31021 -38.31830 -37.10198 -36.03942 -35.31246 -32.89023 -31.19233 -29.98287 -29.07965 -26.19517 -25.21355 -23.95331 -22.71317 -21.13279 -19.05790 -18.31134 -16.87090 -16.46849 -16.17344 -16.07874 -15.46443 -14.76500 -14.48939 -14.24730 -13.96176 -13.27617 -13.04993 -12.66826 -12.56115 -12.37985 -11.92330 -11.61263 -11.56104 -11.31534 -11.04936 -10.96262 -10.82699 -10.76142 -10.72341 -10.24387 -10.16240 -9.20415 -9.16692 -8.81615 -8.76211 -8.41361 -7.62005 -6.05887 -4.13349 0.90529 0.95824 2.14488 3.21554 3.28127 3.29593 3.34896 3.37066 3.85318 4.03666 4.40541 4.68254 4.86830 4.99506 5.11482 5.25412 5.40234 5.48257 5.65492 5.93853 6.00826 6.06096 6.11983 6.27160 6.41101 6.75059 6.80345 7.04031 7.39665 7.49303 7.53953 7.71995 8.01634 8.19124 8.47745 8.82276 8.99658 9.52792 10.99599 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.022583 B = 0.006062 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.558618 B = 4618.151781 C = 5351.429006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.064 0.936 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.580 5.580 13 C 0.088 3.912 14 C 0.556 3.444 15 O -0.531 6.531 16 C -0.126 4.126 17 C 0.146 3.854 18 O -0.484 6.484 19 C -0.145 4.145 20 C -0.087 4.087 21 C -0.123 4.123 22 C 0.004 3.996 23 Cl -0.043 7.043 24 H 0.095 0.905 25 H 0.012 0.988 26 H 0.030 0.970 27 H 0.263 0.737 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.394 0.606 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 -9.489 -15.158 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.311 5.311 13 C -0.056 4.056 14 C 0.341 3.659 15 O -0.409 6.409 16 C -0.130 4.130 17 C 0.100 3.900 18 O -0.295 6.295 19 C -0.164 4.164 20 C -0.105 4.105 21 C -0.142 4.142 22 C -0.024 4.024 23 Cl -0.013 7.013 24 H 0.113 0.887 25 H 0.031 0.969 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.251 0.749 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.398 -8.276 -14.897 17.377 hybrid contribution 0.107 -0.946 1.137 1.483 sum 3.506 -9.222 -13.760 16.931 Atomic orbital electron populations 1.22096 0.98074 0.99337 1.01000 1.18979 0.90885 0.94524 0.79676 0.91843 1.21297 1.31694 1.12981 0.90143 0.92204 1.24876 0.94962 0.94986 0.98907 1.69872 1.36411 1.22621 1.23734 0.86514 0.78677 0.79889 0.82430 1.20630 1.21131 1.19923 1.48178 1.48257 1.11429 1.23230 1.21527 1.01864 0.83403 0.98768 1.17746 0.79539 0.86401 0.82239 1.90781 1.57796 1.16206 1.76098 1.20540 0.95823 1.00337 0.96348 1.18273 0.87958 0.92863 0.90948 1.84812 1.14612 1.39525 1.90518 1.21430 0.98085 0.98301 0.98563 1.21018 0.93780 0.98196 0.97540 1.21012 1.01159 1.00659 0.91397 1.20849 0.92689 0.99157 0.89714 1.98432 1.71037 1.97114 1.34747 0.88692 0.96864 0.95092 0.92697 0.93037 0.90493 0.93772 0.74870 0.84451 0.84486 0.84353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.95 37.15 0.33 -3.12 16 2 C 0.26 6.65 2.64 -69.09 -0.18 6.47 16 3 H 0.06 1.91 6.90 -51.93 -0.36 1.55 16 4 C -0.52 -14.16 8.37 -34.44 -0.29 -14.45 16 5 H 0.06 1.61 7.65 -52.49 -0.40 1.21 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.58 -12.53 2.75 -176.53 -0.49 -13.01 16 13 C 0.09 1.50 9.50 59.85 0.57 2.07 16 14 C 0.56 12.23 5.70 -12.50 -0.07 12.16 16 15 O -0.53 -14.15 16.43 5.28 0.09 -14.06 16 16 C -0.13 -2.18 3.92 -104.82 -0.41 -2.59 16 17 C 0.15 2.09 6.30 -38.70 -0.24 1.85 16 18 O -0.48 -6.88 12.95 -18.66 -0.24 -7.13 16 19 C -0.15 -1.55 9.97 -39.47 -0.39 -1.95 16 20 C -0.09 -0.82 10.03 -39.54 -0.40 -1.22 16 21 C -0.12 -1.41 9.81 -39.59 -0.39 -1.79 16 22 C 0.00 0.06 6.35 -39.08 -0.25 -0.19 16 23 Cl -0.04 -0.72 28.04 -51.86 -1.45 -2.18 16 24 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.27 6.43 -51.93 -0.33 0.94 16 30 H 0.04 0.61 6.56 -51.93 -0.34 0.26 16 31 H 0.39 3.83 9.06 45.56 0.41 4.25 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 307.28 15.07 4.63 4.63 Total: -1.00 -33.45 307.28 -6.61 -40.06 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -2.93 Total: 1.15 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.82 Total: -1.10 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.14 Total: -37.58 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.15 Total: -21.19 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.45 Total: -2.18 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.45 -6.61 -40.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769764982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.098 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds