Wall clock time and date at job start Tue Mar 31 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36014 * 117.00180 * 2 1 4 4 C 1.39257 * 120.38938 * 180.02562 * 3 2 1 5 5 C 1.38305 * 118.46253 * 180.02562 * 4 3 2 6 6 C 1.39093 * 119.14899 * 0.02562 * 5 4 3 7 7 N 1.39254 * 119.64394 * 180.02562 * 6 5 4 8 8 N 1.40097 * 120.00278 * 180.02562 * 7 6 5 9 9 C 1.34774 * 120.00187 * 179.97438 * 8 7 6 10 10 O 1.21274 * 120.00129 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99847 * 179.97438 * 9 8 7 12 12 S 1.80997 * 109.47169 * 180.02562 * 11 9 8 13 13 C 1.76198 * 100.00349 * 180.02562 * 12 11 9 14 14 H 1.08007 * 119.99723 * 359.97438 * 13 12 11 15 15 C 1.38792 * 120.00290 * 180.02562 * 13 12 11 16 16 N 1.31636 * 120.00149 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 120.00129 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.46674 * 90.00451 * 17 15 13 19 19 H 1.48499 * 109.47210 * 210.00266 * 17 15 13 20 20 H 1.48503 * 109.46715 * 330.00534 * 17 15 13 21 21 N 1.32326 * 120.70818 * 359.97438 * 6 5 4 22 22 C 1.32000 * 121.67817 * 359.97438 * 21 6 5 23 23 H 1.08997 * 109.47529 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46667 * 299.99899 * 1 2 3 25 25 H 1.08996 * 109.47402 * 59.99293 * 1 2 3 26 26 H 1.08005 * 120.77034 * 0.02562 * 4 3 2 27 27 H 1.07995 * 120.42163 * 179.72970 * 5 4 3 28 28 H 0.97001 * 120.00096 * 359.97438 * 7 6 5 29 29 H 0.97001 * 119.99626 * 359.97438 * 8 7 6 30 30 H 1.08997 * 109.47728 * 300.00283 * 11 9 8 31 31 H 1.09004 * 109.47134 * 59.99928 * 11 9 8 32 32 H 0.96996 * 120.00347 * 179.97438 * 16 15 13 33 33 H 1.07999 * 119.60931 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 3.4367 1.2942 -0.0005 5 6 4.0228 2.5469 0.0000 6 6 3.2097 3.6753 0.0016 7 7 3.7889 4.9417 0.0017 8 7 2.9770 6.0834 0.0039 9 6 3.5376 7.3090 0.0044 10 8 4.7450 7.4236 0.0035 11 6 2.6642 8.5371 0.0062 12 16 3.7052 10.0178 0.0058 13 6 2.4617 11.2661 0.0088 14 1 1.4179 10.9885 0.0097 15 6 2.8234 12.6060 0.0088 16 7 1.8944 13.5386 0.0115 17 14 4.6287 13.0862 0.0064 18 1 5.1049 13.2140 -1.3943 19 1 4.7965 14.3848 0.7067 20 1 5.4197 12.0412 0.7048 21 7 1.8916 3.5584 0.0021 22 6 1.3003 2.3783 0.0006 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 4.0431 0.4004 -0.0014 27 1 5.0981 2.6475 0.0040 28 1 4.7546 5.0333 0.0010 29 1 2.0113 5.9918 0.0050 30 1 2.0341 8.5362 -0.8832 31 1 2.0356 8.5346 0.8967 32 1 2.1472 14.4751 0.0119 33 1 0.2218 2.3218 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781520862.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:54 Heat of formation + Delta-G solvation = 6.898959 kcal Electronic energy + Delta-G solvation = -18472.262279 eV Core-core repulsion = 15240.555002 eV Total energy + Delta-G solvation = -3231.707277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.92980 -39.50556 -38.40641 -35.66284 -32.76595 -32.46868 -32.16612 -29.73301 -28.04728 -27.37847 -25.63746 -23.77215 -22.80891 -21.02142 -18.83880 -18.32124 -17.89125 -17.42588 -16.60053 -16.15028 -15.80808 -15.35384 -15.01275 -14.76472 -14.38602 -14.32316 -14.11288 -13.63532 -13.51626 -13.03048 -12.82198 -12.64559 -12.25773 -12.05111 -11.30409 -11.25344 -11.03131 -10.69792 -10.05876 -9.95796 -9.82791 -9.71463 -9.17518 -9.02765 -8.55642 -7.38400 -6.95908 -6.31339 -4.04077 0.85808 1.13110 1.84241 2.81220 2.87307 2.95342 3.31055 3.47017 3.48571 3.55953 3.75967 4.30070 4.37891 4.44365 4.59940 4.63131 4.77073 4.78725 5.00589 5.07573 5.11105 5.20309 5.30501 5.54932 5.65965 5.67712 5.94370 6.06542 6.61602 6.93598 7.15054 7.49955 7.87740 7.91631 8.39660 8.45826 9.14327 10.77805 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.047526 B = 0.002752 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.011331 B =10173.185350 C =10741.751299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.011 3.989 4 C -0.054 4.054 5 C -0.192 4.192 6 C 0.379 3.621 7 N -0.518 5.518 8 N -0.521 5.521 9 C 0.530 3.470 10 O -0.524 6.524 11 C -0.115 4.115 12 S -0.134 6.134 13 C -0.523 4.523 14 H 0.090 0.910 15 C 0.096 3.904 16 N -0.879 5.879 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 N -0.516 5.516 22 C 0.076 3.924 23 H 0.100 0.900 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.441 0.559 29 H 0.430 0.570 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.271 0.729 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 -26.801 0.062 26.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C -0.038 4.038 4 C -0.080 4.080 5 C -0.219 4.219 6 C 0.143 3.857 7 N -0.249 5.249 8 N -0.270 5.270 9 C 0.316 3.684 10 O -0.398 6.398 11 C -0.267 4.267 12 S 0.092 5.908 13 C -0.671 4.671 14 H 0.108 0.892 15 C -0.113 4.113 16 N -0.515 5.515 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 N -0.236 5.236 22 C -0.082 4.082 23 H 0.118 0.882 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.162 0.838 27 H 0.161 0.839 28 H 0.285 0.715 29 H 0.272 0.728 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.114 -25.699 0.064 25.699 hybrid contribution -0.701 -0.274 -0.032 0.754 sum -0.815 -25.973 0.032 25.986 Atomic orbital electron populations 1.23054 0.78441 1.04073 1.01396 1.86062 1.21180 1.25883 1.89778 1.19684 0.93045 0.85662 1.05458 1.20602 0.91622 0.97809 0.98012 1.21038 1.00917 0.90292 1.09606 1.18157 0.89099 0.84059 0.94393 1.43139 1.05782 0.94301 1.81691 1.44925 1.07493 0.97146 1.77435 1.20553 0.89516 0.82322 0.76029 1.90709 1.14398 1.85747 1.48939 1.23185 1.02118 0.94902 1.06468 1.84810 1.12556 0.95943 1.97461 1.22310 0.94070 0.91695 1.58983 0.89210 1.24706 0.98164 0.95258 0.93156 1.69935 1.33051 1.00664 1.47879 0.86740 0.85218 0.79967 0.79947 1.19177 1.19885 1.15925 1.66903 1.09525 1.27669 1.19479 1.22501 1.00039 0.86097 0.99543 0.88189 0.92621 0.92613 0.83765 0.83890 0.71463 0.72817 0.87923 0.87878 0.91883 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.82 101.05 0.99 1.12 16 2 O -0.32 -2.68 10.51 -19.79 -0.21 -2.88 16 3 C 0.01 0.10 6.71 -39.12 -0.26 -0.16 16 4 C -0.05 -0.46 10.12 -39.18 -0.40 -0.86 16 5 C -0.19 -1.74 9.93 -39.24 -0.39 -2.13 16 6 C 0.38 4.37 7.60 -154.85 -1.18 3.19 16 7 N -0.52 -6.58 6.43 31.16 0.20 -6.38 16 8 N -0.52 -7.36 6.29 31.22 0.20 -7.16 16 9 C 0.53 9.32 7.96 -10.99 -0.09 9.23 16 10 O -0.52 -10.87 15.70 5.56 0.09 -10.78 16 11 C -0.11 -2.17 6.16 36.01 0.22 -1.94 16 12 S -0.13 -3.32 18.55 -107.50 -1.99 -5.31 16 13 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 14 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 15 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 16 N -0.88 -26.31 13.97 55.49 0.78 -25.53 16 17 Si 0.86 21.53 27.74 -169.99 -4.72 16.81 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 21 N -0.52 -6.08 9.37 -12.28 -0.12 -6.20 16 22 C 0.08 0.73 10.21 -17.39 -0.18 0.55 16 23 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 0.23 7.67 -51.93 -0.40 -0.17 16 25 H 0.06 0.23 7.68 -51.93 -0.40 -0.17 16 26 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 27 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 28 H 0.44 5.30 8.00 -182.60 -1.46 3.84 16 29 H 0.43 5.40 7.95 -182.60 -1.45 3.95 16 30 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 31 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 32 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.16 1.12 6.30 -52.49 -0.33 0.79 16 LS Contribution 308.03 15.07 4.64 4.64 Total: -1.00 -34.38 308.03 -7.92 -42.30 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.73 Total: 3.33 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.06 Total: -2.84 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 1.06 Total: -45.27 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.12 Total: -13.67 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.72 Total: 16.81 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -1.99 Total: -5.31 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.38 -7.92 -42.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781520862.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.202 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds