Wall clock time and date at job start Tue Mar 31 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36014 * 117.00180 * 2 1 4 4 C 1.39257 * 120.38938 * 180.02562 * 3 2 1 5 5 C 1.38305 * 118.46253 * 180.02562 * 4 3 2 6 6 C 1.39093 * 119.14899 * 0.02562 * 5 4 3 7 7 N 1.39254 * 119.64394 * 180.02562 * 6 5 4 8 8 N 1.40097 * 120.00278 * 180.02562 * 7 6 5 9 9 C 1.34774 * 120.00187 * 179.97438 * 8 7 6 10 10 O 1.21274 * 120.00129 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99847 * 179.97438 * 9 8 7 12 12 S 1.80997 * 109.47169 * 180.02562 * 11 9 8 13 13 C 1.76198 * 100.00349 * 180.02562 * 12 11 9 14 14 H 1.08007 * 119.99723 * 359.97438 * 13 12 11 15 15 C 1.38792 * 120.00290 * 180.02562 * 13 12 11 16 16 N 1.31636 * 120.00149 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 120.00129 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.46674 * 90.00451 * 17 15 13 19 19 H 1.48499 * 109.47210 * 210.00266 * 17 15 13 20 20 H 1.48503 * 109.46715 * 330.00534 * 17 15 13 21 21 N 1.32326 * 120.70818 * 359.97438 * 6 5 4 22 22 C 1.32000 * 121.67817 * 359.97438 * 21 6 5 23 23 H 1.08997 * 109.47529 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46667 * 299.99899 * 1 2 3 25 25 H 1.08996 * 109.47402 * 59.99293 * 1 2 3 26 26 H 1.08005 * 120.77034 * 0.02562 * 4 3 2 27 27 H 1.07995 * 120.42163 * 179.72970 * 5 4 3 28 28 H 0.97001 * 120.00096 * 359.97438 * 7 6 5 29 29 H 0.97001 * 119.99626 * 359.97438 * 8 7 6 30 30 H 1.08997 * 109.47728 * 300.00283 * 11 9 8 31 31 H 1.09004 * 109.47134 * 59.99928 * 11 9 8 32 32 H 0.96996 * 120.00347 * 179.97438 * 16 15 13 33 33 H 1.07999 * 119.60931 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 3.4367 1.2942 -0.0005 5 6 4.0228 2.5469 0.0000 6 6 3.2097 3.6753 0.0016 7 7 3.7889 4.9417 0.0017 8 7 2.9770 6.0834 0.0039 9 6 3.5376 7.3090 0.0044 10 8 4.7450 7.4236 0.0035 11 6 2.6642 8.5371 0.0062 12 16 3.7052 10.0178 0.0058 13 6 2.4617 11.2661 0.0088 14 1 1.4179 10.9885 0.0097 15 6 2.8234 12.6060 0.0088 16 7 1.8944 13.5386 0.0115 17 14 4.6287 13.0862 0.0064 18 1 5.1049 13.2140 -1.3943 19 1 4.7965 14.3848 0.7067 20 1 5.4197 12.0412 0.7048 21 7 1.8916 3.5584 0.0021 22 6 1.3003 2.3783 0.0006 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 4.0431 0.4004 -0.0014 27 1 5.0981 2.6475 0.0040 28 1 4.7546 5.0333 0.0010 29 1 2.0113 5.9918 0.0050 30 1 2.0341 8.5362 -0.8832 31 1 2.0356 8.5346 0.8967 32 1 2.1472 14.4751 0.0119 33 1 0.2218 2.3218 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781520862.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:54 Heat of formation + Delta-G solvation = -18.033580 kcal Electronic energy + Delta-G solvation = -18473.343435 eV Core-core repulsion = 15240.555002 eV Total energy + Delta-G solvation = -3232.788433 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.69058 -40.73237 -39.17271 -36.74319 -34.66787 -33.55484 -33.22608 -30.91911 -28.86520 -28.10690 -27.81314 -24.51635 -23.59671 -22.26877 -20.17939 -19.36765 -18.87632 -18.77642 -17.57126 -17.13105 -16.84887 -16.80634 -16.61365 -15.98563 -15.47077 -15.19499 -15.09040 -14.91620 -14.80352 -14.34582 -13.93698 -13.70983 -13.34353 -13.03877 -12.91949 -12.72378 -12.68405 -12.10304 -11.87502 -11.28525 -11.16592 -10.77256 -10.55534 -10.54012 -10.09652 -9.00349 -8.50875 -8.27941 -6.22160 0.15808 0.36970 0.63351 1.16730 1.32595 1.43846 1.49358 1.66877 2.25188 2.37244 2.63008 2.80567 2.83562 2.87365 3.52394 3.73525 3.84922 3.93964 4.18769 4.28405 4.43361 4.45214 4.45916 4.63345 4.79154 4.87084 4.98359 5.30863 5.66469 5.71675 6.05764 6.12983 6.35999 6.44819 6.93865 6.96215 7.27046 8.61467 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.047526 B = 0.002752 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.011331 B =10173.185350 C =10741.751299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.015 3.985 4 C -0.059 4.059 5 C -0.183 4.183 6 C 0.355 3.645 7 N -0.524 5.524 8 N -0.503 5.503 9 C 0.535 3.465 10 O -0.560 6.560 11 C -0.103 4.103 12 S -0.162 6.162 13 C -0.530 4.530 14 H 0.064 0.936 15 C 0.045 3.955 16 N -0.917 5.917 17 Si 0.914 3.086 18 H -0.262 1.262 19 H -0.260 1.260 20 H -0.235 1.235 21 N -0.537 5.537 22 C 0.062 3.938 23 H 0.119 0.881 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.169 0.831 27 H 0.167 0.833 28 H 0.442 0.558 29 H 0.438 0.562 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.277 0.723 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.106 -29.077 0.075 29.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C -0.035 4.035 4 C -0.085 4.085 5 C -0.208 4.208 6 C 0.121 3.879 7 N -0.258 5.258 8 N -0.250 5.250 9 C 0.321 3.679 10 O -0.437 6.437 11 C -0.255 4.255 12 S 0.064 5.936 13 C -0.678 4.678 14 H 0.082 0.918 15 C -0.161 4.161 16 N -0.555 5.555 17 Si 0.736 3.264 18 H -0.187 1.187 19 H -0.184 1.184 20 H -0.159 1.159 21 N -0.256 5.256 22 C -0.095 4.095 23 H 0.137 0.863 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.186 0.814 27 H 0.184 0.816 28 H 0.287 0.713 29 H 0.281 0.719 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.086 0.914 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.253 -28.040 0.079 28.041 hybrid contribution -1.014 0.127 -0.041 1.023 sum -0.761 -27.913 0.037 27.923 Atomic orbital electron populations 1.23337 0.76641 1.05707 1.02170 1.86060 1.23107 1.25412 1.89466 1.19879 0.93561 0.85931 1.04104 1.20958 0.91780 0.98465 0.97307 1.21306 1.02005 0.89572 1.07959 1.18412 0.89581 0.83976 0.95973 1.43210 1.05628 0.93838 1.83106 1.44536 1.08029 0.97123 1.75328 1.20079 0.88622 0.82900 0.76339 1.90695 1.15569 1.86246 1.51186 1.23119 1.01429 0.92780 1.08160 1.84681 1.13319 0.97976 1.97607 1.22471 0.93936 0.93094 1.58292 0.91759 1.25568 1.02214 0.95374 0.92906 1.70017 1.35094 1.01279 1.49086 0.85867 0.80240 0.80040 0.80225 1.18677 1.18429 1.15870 1.66849 1.09942 1.28890 1.19908 1.22828 1.01105 0.85736 0.99833 0.86251 0.91832 0.91823 0.81386 0.81559 0.71272 0.71856 0.86269 0.86231 0.91358 0.80457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.82 113.37 1.11 1.23 16 2 O -0.33 -4.78 10.51 -93.71 -0.99 -5.76 16 3 C 0.01 0.24 6.71 22.57 0.15 0.39 16 4 C -0.06 -0.85 10.12 22.53 0.23 -0.63 16 5 C -0.18 -2.91 9.93 22.49 0.22 -2.68 16 6 C 0.36 7.66 7.60 132.99 1.01 8.67 16 7 N -0.52 -12.68 6.43 -55.34 -0.36 -13.04 16 8 N -0.50 -13.62 6.29 -173.54 -1.09 -14.71 16 9 C 0.54 18.34 7.96 87.66 0.70 19.04 16 10 O -0.56 -22.93 15.70 -3.01 -0.05 -22.98 16 11 C -0.10 -3.79 6.16 71.24 0.44 -3.35 16 12 S -0.16 -8.01 18.55 -56.49 -1.05 -9.06 16 13 C -0.53 -30.47 10.04 67.95 0.68 -29.79 16 14 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 15 C 0.04 2.61 5.50 84.85 0.47 3.08 16 16 N -0.92 -55.55 13.97 21.65 0.30 -55.24 16 17 Si 0.91 44.47 27.74 68.60 1.90 46.38 16 18 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.23 -11.33 6.74 99.48 0.67 -10.66 16 21 N -0.54 -11.88 9.37 -192.78 -1.81 -13.68 16 22 C 0.06 1.09 10.21 84.72 0.87 1.95 16 23 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.06 0.38 7.67 -2.39 -0.02 0.36 16 25 H 0.06 0.38 7.68 -2.39 -0.02 0.36 16 26 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 27 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 28 H 0.44 10.21 8.00 -213.32 -1.71 8.51 16 29 H 0.44 10.42 7.95 -213.32 -1.70 8.73 16 30 H 0.12 4.01 8.14 -2.40 -0.02 3.99 16 31 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 32 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 33 H 0.18 2.18 6.30 -2.91 -0.02 2.16 16 Total: -1.00 -73.85 308.03 0.48 -73.37 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -2.27 Total: 16.83 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 5.88 Total: -2.10 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -2.95 Total: -96.67 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -1.03 Total: -28.74 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.90 Total: 46.38 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.05 Total: -9.06 kcal Total: -73.85 0.48 -73.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781520862.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.335 kcal (2) G-P(sol) polarization free energy of solvation -73.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds