Wall clock time and date at job start Tue Mar 31 2020 06:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38138 * 120.46776 * 2 1 4 4 Cl 1.73604 * 119.59565 * 0.02562 * 3 2 1 5 5 N 1.32049 * 120.80129 * 179.97438 * 3 2 1 6 6 C 1.32002 * 121.87802 * 0.02562 * 5 3 2 7 7 C 1.37888 * 120.85642 * 359.73471 * 6 5 3 8 8 C 1.39311 * 120.47010 * 179.97438 * 2 1 3 9 9 N 1.39541 * 120.84936 * 359.97438 * 8 2 1 10 10 C 1.34777 * 120.00015 * 155.26649 * 9 8 2 11 11 O 1.21586 * 119.99814 * 4.30621 * 10 9 8 12 12 N 1.34780 * 120.00337 * 184.30865 * 10 9 8 13 13 C 1.46499 * 119.99928 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47104 * 35.00017 * 13 12 10 15 15 C 1.52994 * 109.46885 * 274.99592 * 13 12 10 16 16 C 1.50702 * 109.46784 * 154.99868 * 13 12 10 17 17 H 1.08000 * 119.99853 * 34.99694 * 16 13 12 18 18 C 1.37877 * 119.99895 * 214.99996 * 16 13 12 19 19 N 1.31515 * 120.00065 * 184.97948 * 18 16 13 20 20 Si 1.86800 * 120.00123 * 4.97358 * 18 16 13 21 21 H 1.48496 * 109.47029 * 84.95231 * 20 18 16 22 22 H 1.48500 * 109.47370 * 204.95352 * 20 18 16 23 23 H 1.48506 * 109.47107 * 324.95383 * 20 18 16 24 24 H 1.08998 * 109.46745 * 270.02551 * 1 2 3 25 25 H 1.09007 * 109.46893 * 30.01779 * 1 2 3 26 26 H 1.08995 * 109.46943 * 150.02242 * 1 2 3 27 27 H 1.07995 * 119.57367 * 179.97438 * 6 5 3 28 28 H 1.07996 * 120.45142 * 180.27091 * 7 6 5 29 29 H 0.97003 * 120.00367 * 335.26375 * 9 8 2 30 30 H 0.97002 * 119.99344 * 359.97438 * 12 10 9 31 31 H 1.09007 * 109.47362 * 175.01435 * 15 13 12 32 32 H 1.08996 * 109.47410 * 55.01646 * 15 13 12 33 33 H 1.09005 * 109.47634 * 295.01111 * 15 13 12 34 34 H 0.96992 * 119.99976 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2075 1.1906 0.0000 4 17 1.3411 2.6951 0.0007 5 7 3.5280 1.1983 0.0005 6 6 4.2316 0.0815 0.0005 7 6 3.6071 -1.1479 0.0055 8 6 2.2135 -1.2007 0.0005 9 7 1.5438 -2.4249 0.0016 10 6 2.1503 -3.5252 -0.4862 11 8 3.3075 -3.4686 -0.8548 12 7 1.4739 -4.6884 -0.5656 13 6 2.1331 -5.8842 -1.0964 14 1 3.1830 -5.8804 -0.8039 15 6 2.0288 -5.8888 -2.6227 16 6 1.4619 -7.1149 -0.5432 17 1 0.3964 -7.1159 -0.3671 18 6 2.2082 -8.2396 -0.2620 19 7 1.6110 -9.3447 0.1274 20 14 4.0677 -8.1939 -0.4344 21 1 4.6674 -7.6566 0.8133 22 1 4.5764 -9.5679 -0.6764 23 1 4.4376 -7.3207 -1.5772 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8899 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 5.3104 0.1312 0.0005 28 1 4.1892 -2.0575 0.0099 29 1 0.6418 -2.4841 0.3535 30 1 0.5508 -4.7336 -0.2711 31 1 2.5943 -6.7304 -3.0231 32 1 2.4349 -4.9576 -3.0175 33 1 0.9829 -5.9820 -2.9153 34 1 2.1360 -10.1358 0.3256 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810285630.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:30 Heat of formation + Delta-G solvation = -2.569307 kcal Electronic energy + Delta-G solvation = -19639.274781 eV Core-core repulsion = 16405.113223 eV Total energy + Delta-G solvation = -3234.161559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98704 -39.35204 -36.78583 -35.83434 -34.88193 -32.88133 -32.52189 -31.03208 -29.36422 -27.36364 -25.42897 -23.94558 -22.35512 -21.36533 -20.14028 -18.85204 -18.14069 -16.86606 -16.26141 -15.73532 -15.36884 -15.12144 -14.73374 -14.49701 -14.27185 -13.72745 -13.39788 -13.04216 -12.79576 -12.62787 -12.54776 -12.14503 -11.91086 -11.65980 -11.24658 -11.19991 -10.97499 -10.86533 -10.64742 -10.11846 -9.94340 -9.40882 -9.31969 -8.89757 -8.83112 -8.66977 -8.19271 -6.34091 -4.39087 0.89434 1.10580 1.68106 2.77864 3.19712 3.27525 3.33538 3.34315 3.71369 4.22900 4.39765 4.45524 4.62876 4.70975 5.03688 5.14355 5.21463 5.35548 5.51193 5.66636 5.81814 5.99856 6.18874 6.23489 6.40382 6.56170 6.70017 6.72131 6.93899 7.16744 7.28565 7.40305 7.71479 8.08162 8.44415 8.65913 8.84569 9.26772 10.77264 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.035872 B = 0.003764 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.375601 B = 7436.324104 C = 7874.656339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.166 4.166 3 C 0.191 3.809 4 Cl -0.037 7.037 5 N -0.500 5.500 6 C 0.127 3.873 7 C -0.183 4.183 8 C 0.236 3.764 9 N -0.681 5.681 10 C 0.692 3.308 11 O -0.580 6.580 12 N -0.708 5.708 13 C 0.246 3.754 14 H 0.052 0.948 15 C -0.149 4.149 16 C -0.533 4.533 17 H 0.079 0.921 18 C 0.083 3.917 19 N -0.885 5.885 20 Si 0.875 3.125 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.259 1.259 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.166 0.834 28 H 0.176 0.824 29 H 0.409 0.591 30 H 0.392 0.608 31 H 0.054 0.946 32 H 0.029 0.971 33 H 0.047 0.953 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 17.842 0.655 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.173 4.173 3 C 0.026 3.974 4 Cl -0.009 7.009 5 N -0.213 5.213 6 C -0.029 4.029 7 C -0.206 4.206 8 C 0.129 3.871 9 N -0.327 5.327 10 C 0.393 3.607 11 O -0.458 6.458 12 N -0.359 5.359 13 C 0.144 3.856 14 H 0.070 0.930 15 C -0.208 4.208 16 C -0.571 4.571 17 H 0.097 0.903 18 C -0.123 4.123 19 N -0.521 5.521 20 Si 0.701 3.299 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.184 1.184 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.183 0.817 28 H 0.193 0.807 29 H 0.246 0.754 30 H 0.226 0.774 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.480 18.414 0.330 18.423 hybrid contribution -0.455 -0.822 0.273 0.978 sum -0.935 17.592 0.603 17.627 Atomic orbital electron populations 1.20726 0.89402 1.03843 1.03001 1.20106 0.97796 0.90624 1.08802 1.21043 0.89669 0.86266 1.00383 1.98375 1.73852 1.32095 1.96535 1.66968 1.06177 1.32639 1.15484 1.22543 1.00045 0.85969 0.94313 1.22870 0.93761 1.01767 1.02155 1.17527 0.91575 0.84099 0.93946 1.42804 1.19335 1.06214 1.64360 1.16260 0.85308 0.80401 0.78769 1.90792 1.15678 1.83837 1.55469 1.46122 1.15983 1.08225 1.65590 1.19122 0.94535 0.81440 0.90500 0.92965 1.22241 1.00787 0.99417 0.98332 1.20979 0.96566 0.94899 1.44666 0.90253 1.24943 0.98792 0.95103 0.93422 1.69870 1.36391 1.01793 1.44031 0.86882 0.85521 0.77560 0.79908 1.19774 1.21064 1.18382 0.90500 0.90256 0.91142 0.81656 0.80737 0.75438 0.77395 0.92672 0.95148 0.93356 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.11 36.01 0.33 -0.67 16 2 C -0.17 -2.01 5.92 -104.26 -0.62 -2.63 16 3 C 0.19 2.48 7.27 -17.49 -0.13 2.36 16 4 Cl -0.04 -0.41 27.46 -51.86 -1.42 -1.83 16 5 N -0.50 -6.96 10.34 -10.45 -0.11 -7.07 16 6 C 0.13 1.64 11.17 -17.61 -0.20 1.44 16 7 C -0.18 -2.64 8.87 -39.26 -0.35 -2.99 16 8 C 0.24 3.25 6.48 -83.50 -0.54 2.71 16 9 N -0.68 -9.17 5.01 -14.07 -0.07 -9.24 16 10 C 0.69 12.24 8.43 -86.91 -0.73 11.50 16 11 O -0.58 -12.04 12.96 5.29 0.07 -11.97 16 12 N -0.71 -12.96 5.07 -59.82 -0.30 -13.27 16 13 C 0.25 5.48 2.22 -69.08 -0.15 5.33 16 14 H 0.05 1.27 4.72 -51.93 -0.25 1.03 16 15 C -0.15 -3.09 9.47 37.15 0.35 -2.74 16 16 C -0.53 -13.56 9.05 -34.44 -0.31 -13.87 16 17 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 18 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 19 N -0.89 -25.10 13.96 55.43 0.77 -24.33 16 20 Si 0.87 20.63 26.99 -169.99 -4.59 16.04 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.26 -6.01 6.81 56.52 0.39 -5.62 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.66 6.92 -51.93 -0.36 0.30 16 26 H 0.07 0.57 7.10 -51.93 -0.37 0.20 16 27 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.18 2.83 5.59 -52.49 -0.29 2.53 16 29 H 0.41 4.15 7.55 -40.82 -0.31 3.85 16 30 H 0.39 6.14 8.61 -40.82 -0.35 5.79 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 303.74 15.07 4.58 4.58 Total: -1.00 -30.22 303.74 -7.13 -37.35 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -3.61 Total: 7.18 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -2.45 Total: 2.56 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.29 Total: -53.90 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.07 Total: -11.97 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.59 Total: 16.04 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.42 Total: -1.83 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.22 -7.13 -37.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810285630.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.783 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds