Wall clock time and date at job start Tue Mar 31 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38134 * 120.47185 * 2 1 4 4 Cl 1.73597 * 119.59617 * 359.97438 * 3 2 1 5 5 N 1.32046 * 120.80558 * 179.97438 * 3 2 1 6 6 C 1.32014 * 121.87608 * 0.02562 * 5 3 2 7 7 C 1.37886 * 120.85301 * 359.74726 * 6 5 3 8 8 C 1.39318 * 120.46730 * 179.97438 * 2 1 3 9 9 N 1.39548 * 120.85017 * 359.97438 * 8 2 1 10 10 C 1.34778 * 119.99930 * 146.19756 * 9 8 2 11 11 O 1.21588 * 119.99680 * 4.20839 * 10 9 8 12 12 N 1.34774 * 120.00227 * 184.21190 * 10 9 8 13 13 C 1.46496 * 120.00207 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47148 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46955 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00133 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99556 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99807 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 120.00472 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47068 * 89.99744 * 19 17 15 21 21 H 1.48499 * 109.47057 * 209.99678 * 19 17 15 22 22 H 1.48498 * 109.46756 * 329.99933 * 19 17 15 23 23 H 1.08995 * 109.47137 * 270.02116 * 1 2 3 24 24 H 1.09001 * 109.47208 * 30.01727 * 1 2 3 25 25 H 1.08999 * 109.47369 * 150.02068 * 1 2 3 26 26 H 1.07995 * 119.57180 * 180.02562 * 6 5 3 27 27 H 1.07996 * 120.44876 * 180.28878 * 7 6 5 28 28 H 0.96999 * 119.99846 * 326.19490 * 9 8 2 29 29 H 0.97002 * 119.99598 * 0.02562 * 12 10 9 30 30 H 1.09007 * 109.47209 * 299.99670 * 13 12 10 31 31 H 1.08993 * 109.47038 * 59.99512 * 13 12 10 32 32 H 1.08999 * 109.46928 * 300.00136 * 14 13 12 33 33 H 1.09000 * 109.46975 * 60.00025 * 14 13 12 34 34 H 0.97004 * 120.00077 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2075 1.1905 0.0000 4 17 1.3413 2.6950 -0.0007 5 7 3.5279 1.1982 0.0005 6 6 4.2316 0.0813 0.0005 7 6 3.6069 -1.1480 0.0052 8 6 2.2134 -1.2008 0.0005 9 7 1.5436 -2.4251 0.0016 10 6 2.0708 -3.4822 -0.6472 11 8 3.1655 -3.3913 -1.1685 12 7 1.3846 -4.6400 -0.7183 13 6 1.9574 -5.7888 -1.4241 14 6 0.9828 -6.9664 -1.3570 15 6 1.5724 -8.1484 -2.0824 16 1 2.5447 -8.0677 -2.5454 17 6 0.8703 -9.3328 -2.1550 18 7 1.3846 -10.3642 -2.7886 19 14 -0.8119 -9.4722 -1.3548 20 1 -1.8589 -9.0797 -2.3320 21 1 -1.0394 -10.8743 -0.9218 22 1 -0.8745 -8.5732 -0.1745 23 1 -0.3633 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8901 -0.5135 26 1 5.3104 0.1310 0.0014 27 1 4.1890 -2.0577 0.0099 28 1 0.6986 -2.5152 0.4694 29 1 0.5111 -4.7123 -0.3028 30 1 2.1348 -5.5235 -2.4664 31 1 2.9004 -6.0699 -0.9553 32 1 0.8050 -7.2318 -0.3148 33 1 0.0401 -6.6849 -1.8261 34 1 0.8905 -11.1974 -2.8400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810296891.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:13 Heat of formation + Delta-G solvation = -29.276383 kcal Electronic energy + Delta-G solvation = -19026.302411 eV Core-core repulsion = 15790.982746 eV Total energy + Delta-G solvation = -3235.319664 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.16232 -40.65397 -37.75784 -37.07269 -36.38035 -34.85623 -33.84865 -32.49901 -31.28278 -28.31022 -26.93575 -24.76674 -23.30031 -22.65400 -22.19409 -19.98302 -19.16365 -18.91010 -17.71437 -16.87698 -16.72924 -16.29381 -16.15803 -15.89995 -15.62793 -15.30450 -15.11695 -14.66206 -14.58148 -13.80269 -13.59154 -13.35148 -13.15357 -13.03036 -12.80747 -12.21101 -12.19877 -12.10552 -11.94007 -11.75198 -11.58539 -11.42403 -10.77812 -10.68665 -10.25604 -9.89797 -9.64321 -8.28625 -6.36121 -0.12641 -0.02854 0.69750 1.40754 1.41979 1.43564 1.54329 1.91193 2.38117 2.58759 3.04375 3.06922 3.47557 3.65768 3.75023 3.98553 4.30400 4.33619 4.45044 4.47265 4.71525 4.73603 4.76499 4.96255 5.04850 5.12725 5.16722 5.39656 5.42636 5.55934 5.63829 5.78622 6.23451 6.67216 6.71463 6.86594 7.28346 7.33235 8.88133 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.038357 B = 0.002970 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.808074 B = 9426.712369 C =10010.309110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.147 4.147 3 C 0.174 3.826 4 Cl -0.020 7.020 5 N -0.510 5.510 6 C 0.126 3.874 7 C -0.180 4.180 8 C 0.215 3.785 9 N -0.662 5.662 10 C 0.701 3.299 11 O -0.610 6.610 12 N -0.718 5.718 13 C 0.163 3.837 14 C -0.013 4.013 15 C -0.539 4.539 16 H 0.029 0.971 17 C 0.003 3.997 18 N -0.952 5.952 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.233 1.233 23 H 0.100 0.900 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.191 0.809 27 H 0.147 0.853 28 H 0.429 0.571 29 H 0.415 0.585 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 23.711 10.719 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.153 4.153 3 C 0.010 3.990 4 Cl 0.008 6.992 5 N -0.223 5.223 6 C -0.029 4.029 7 C -0.203 4.203 8 C 0.109 3.891 9 N -0.312 5.312 10 C 0.401 3.599 11 O -0.489 6.489 12 N -0.373 5.373 13 C 0.039 3.961 14 C -0.050 4.050 15 C -0.577 4.577 16 H 0.048 0.952 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.781 3.219 20 H -0.191 1.191 21 H -0.216 1.216 22 H -0.156 1.156 23 H 0.118 0.882 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.208 0.792 27 H 0.165 0.835 28 H 0.269 0.731 29 H 0.252 0.748 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.472 24.428 10.174 26.837 hybrid contribution -1.261 -1.420 0.156 1.906 sum -5.733 23.009 10.330 25.864 Atomic orbital electron populations 1.20875 0.86886 1.04751 1.04671 1.20441 0.99518 0.89611 1.05726 1.21398 0.89718 0.87455 1.00474 1.98386 1.73342 1.31058 1.96409 1.67053 1.06940 1.33026 1.15271 1.22873 1.01271 0.85217 0.93575 1.22480 0.94154 1.01079 1.02563 1.17538 0.91361 0.84452 0.95709 1.42244 1.26850 1.07109 1.54961 1.16031 0.83957 0.80695 0.79195 1.90920 1.21653 1.83332 1.52969 1.45116 1.22810 1.10478 1.58920 1.20980 0.96650 0.83473 0.95013 1.19656 0.95674 0.91958 0.97762 1.21255 1.04513 0.96901 1.35039 0.95212 1.26092 1.03046 0.94894 0.95383 1.70081 1.40870 1.03789 1.44468 0.85540 0.78218 0.77854 0.80247 1.19105 1.21616 1.15574 0.88182 0.89788 0.90013 0.79196 0.83501 0.73064 0.74845 0.93614 0.93347 0.94220 0.94455 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.14 71.23 0.65 -0.68 16 2 C -0.15 -2.75 5.92 -19.63 -0.12 -2.86 16 3 C 0.17 3.73 7.27 84.64 0.61 4.35 16 4 Cl -0.02 -0.37 27.45 -2.72 -0.07 -0.44 16 5 N -0.51 -12.10 10.34 -186.97 -1.93 -14.04 16 6 C 0.13 2.72 11.17 84.58 0.94 3.66 16 7 C -0.18 -4.31 8.78 22.48 0.20 -4.11 16 8 C 0.21 4.66 6.33 38.47 0.24 4.91 16 9 N -0.66 -12.83 4.82 -316.69 -1.53 -14.35 16 10 C 0.70 19.62 8.43 179.05 1.51 21.13 16 11 O -0.61 -22.36 13.79 -3.99 -0.06 -22.41 16 12 N -0.72 -19.31 5.56 -478.54 -2.66 -21.97 16 13 C 0.16 6.04 5.61 86.38 0.48 6.52 16 14 C -0.01 -0.52 4.16 29.85 0.12 -0.40 16 15 C -0.54 -29.49 9.66 25.60 0.25 -29.25 16 16 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 17 C 0.00 0.16 5.47 84.65 0.46 0.62 16 18 N -0.95 -58.20 13.96 21.45 0.30 -57.90 16 19 Si 0.96 40.56 27.47 68.60 1.88 42.44 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 21 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.23 -8.53 6.54 99.48 0.65 -7.88 16 23 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.08 0.96 6.92 -2.39 -0.02 0.94 16 25 H 0.08 0.81 7.27 -2.39 -0.02 0.79 16 26 H 0.19 2.95 8.06 -2.91 -0.02 2.93 16 27 H 0.15 3.98 6.27 -2.91 -0.02 3.96 16 28 H 0.43 4.86 7.94 -92.71 -0.74 4.13 16 29 H 0.41 7.93 8.49 -92.71 -0.79 7.14 16 30 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.52 7.20 -2.39 -0.02 1.50 16 33 H 0.04 1.41 7.57 -2.39 -0.02 1.39 16 34 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -71.74 306.50 0.88 -70.86 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -0.42 Total: 13.92 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 5.36 Total: 3.89 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -5.82 Total: -108.26 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.06 Total: -22.41 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.88 Total: 42.44 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.07 Total: -0.44 kcal Total: -71.74 0.88 -70.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810296891.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.587 kcal (2) G-P(sol) polarization free energy of solvation -71.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds