Wall clock time and date at job start Tue Mar 31 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35976 * 116.99955 * 2 1 4 4 C 1.38545 * 120.07905 * 359.72605 * 3 2 1 5 5 C 1.38338 * 120.00387 * 179.71820 * 4 3 2 6 6 Cl 1.73603 * 119.92428 * 180.25547 * 5 4 3 7 7 C 1.38387 * 120.15259 * 0.55706 * 5 4 3 8 8 C 1.38195 * 120.15226 * 359.72223 * 7 5 4 9 9 C 1.38715 * 119.99126 * 359.97438 * 8 7 5 10 10 N 1.40180 * 120.07136 * 179.97438 * 9 8 7 11 11 C 1.34774 * 120.00068 * 24.80438 * 10 9 8 12 12 O 1.21292 * 120.00014 * 5.53709 * 11 10 9 13 13 C 1.50697 * 119.99802 * 185.53215 * 11 10 9 14 14 C 1.52998 * 109.47159 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.47370 * 180.02562 * 14 13 11 16 16 H 1.07995 * 119.99889 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99827 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00362 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 119.99578 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47239 * 90.00217 * 19 17 15 21 21 H 1.48505 * 109.47158 * 210.00188 * 19 17 15 22 22 H 1.48505 * 109.47479 * 329.99903 * 19 17 15 23 23 H 1.08990 * 109.47604 * 179.97438 * 1 2 3 24 24 H 1.09011 * 109.47277 * 59.99472 * 1 2 3 25 25 H 1.09002 * 109.47395 * 300.00201 * 1 2 3 26 26 H 1.07998 * 119.99544 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.92651 * 179.69911 * 7 5 4 28 28 H 1.07996 * 120.00605 * 179.97438 * 8 7 5 29 29 H 0.96999 * 119.99378 * 204.80530 * 10 9 8 30 30 H 1.09005 * 109.47524 * 300.00200 * 13 11 10 31 31 H 1.08999 * 109.47104 * 60.00121 * 13 11 10 32 32 H 1.09005 * 109.46946 * 300.00407 * 14 13 11 33 33 H 1.08999 * 109.47134 * 59.99992 * 14 13 11 34 34 H 0.96994 * 120.00221 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2933 2.3745 -0.0057 5 6 1.9229 3.6063 0.0002 6 17 0.9773 5.0622 -0.0003 7 6 3.3048 3.6807 0.0002 8 6 4.0621 2.5247 0.0001 9 6 3.4372 1.2863 0.0005 10 7 4.2038 0.1127 -0.0002 11 6 5.4597 0.1279 0.4885 12 8 5.8917 1.1290 1.0199 13 6 6.3273 -1.0991 0.3748 14 6 7.6934 -0.8177 1.0037 15 6 8.5613 -2.0445 0.8894 16 1 8.1768 -2.9358 0.4161 17 6 9.8458 -2.0292 1.3902 18 7 10.3136 -0.9444 1.9680 19 14 10.9212 -3.5500 1.2492 20 1 11.6830 -3.5013 -0.0247 21 1 11.8692 -3.5936 2.3915 22 1 10.0665 -4.7643 1.2688 23 1 -0.3634 -1.0275 -0.0005 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.2147 2.3194 -0.0106 27 1 3.7925 4.6443 -0.0001 28 1 5.1404 2.5855 -0.0004 29 1 3.8302 -0.7103 -0.3523 30 1 5.8519 -1.9299 0.8962 31 1 6.4569 -1.3563 -0.6764 32 1 8.1690 0.0132 0.4826 33 1 7.5635 -0.5608 2.0549 34 1 11.2173 -0.9336 2.3199 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812550699.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:04 Heat of formation + Delta-G solvation = -83.082486 kcal Electronic energy + Delta-G solvation = -19149.867344 eV Core-core repulsion = 15879.921721 eV Total energy + Delta-G solvation = -3269.945623 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.92282 -40.44217 -38.58859 -37.38950 -35.75908 -35.54401 -33.11337 -31.41930 -30.63958 -28.22399 -27.60095 -24.64172 -23.55525 -22.89605 -21.19854 -19.57465 -18.83309 -18.36674 -17.76216 -17.09495 -16.66247 -16.49279 -16.45453 -16.29723 -15.42995 -14.93888 -14.87887 -14.50274 -14.21568 -14.10384 -13.58661 -13.25025 -13.14977 -12.87563 -12.79522 -12.48719 -12.40538 -12.02087 -11.96882 -11.90333 -11.63638 -11.31835 -11.27629 -10.71377 -10.55185 -9.75981 -8.85043 -8.17095 -6.30639 -0.05602 0.20209 1.04550 1.43591 1.45878 1.56619 1.56723 1.96734 2.22075 2.44590 2.56942 3.16389 3.65739 3.82602 3.96153 4.02662 4.29350 4.35445 4.42797 4.51456 4.53504 4.65650 4.68403 4.79972 5.00050 5.06823 5.12853 5.31664 5.51176 5.60058 5.63804 5.86094 6.18036 6.24608 6.41148 6.87253 7.14620 7.39474 8.95427 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030585 B = 0.003209 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.255870 B = 8723.583134 C = 9549.298742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.111 3.889 4 C -0.174 4.174 5 C -0.022 4.022 6 Cl -0.059 7.059 7 C -0.125 4.125 8 C -0.106 4.106 9 C 0.114 3.886 10 N -0.654 5.654 11 C 0.513 3.487 12 O -0.558 6.558 13 C -0.117 4.117 14 C 0.042 3.958 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.006 4.006 18 N -0.936 5.936 19 Si 0.972 3.028 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.256 1.256 23 H 0.123 0.877 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.169 0.831 27 H 0.148 0.852 28 H 0.137 0.863 29 H 0.428 0.572 30 H 0.108 0.892 31 H 0.111 0.889 32 H -0.013 1.013 33 H -0.015 1.015 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.418 4.137 -7.161 25.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.062 3.938 4 C -0.193 4.193 5 C -0.049 4.049 6 Cl -0.030 7.030 7 C -0.145 4.145 8 C -0.127 4.127 9 C 0.018 3.982 10 N -0.300 5.300 11 C 0.303 3.697 12 O -0.436 6.436 13 C -0.156 4.156 14 C 0.004 3.996 15 C -0.581 4.581 16 H 0.094 0.906 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.796 3.204 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.179 1.179 23 H 0.141 0.859 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.186 0.814 27 H 0.165 0.835 28 H 0.155 0.845 29 H 0.267 0.733 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.005 0.995 33 H 0.003 0.997 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.933 4.771 -6.713 25.310 hybrid contribution 0.564 -0.358 0.114 0.677 sum -23.369 4.414 -6.599 24.681 Atomic orbital electron populations 1.23444 0.75655 1.06079 1.02594 1.86044 1.24020 1.24933 1.88759 1.18435 0.89418 0.85806 1.00092 1.21077 1.01636 0.89186 1.07427 1.20641 0.91514 0.87884 1.04905 1.98364 1.72096 1.35620 1.96892 1.21003 0.91782 0.99248 1.02448 1.21221 1.01452 0.90318 0.99696 1.17490 0.87983 0.87660 1.05081 1.43452 1.13563 1.11707 1.61268 1.21608 0.81567 0.90795 0.75694 1.90631 1.73598 1.36085 1.43259 1.21671 0.95179 0.94287 1.04473 1.18707 0.91003 0.95619 0.94280 1.21704 0.98622 0.99548 1.38181 0.90557 1.26105 0.99945 0.99629 0.94691 1.70163 1.17322 1.30215 1.39950 0.85344 0.78221 0.79179 0.77636 1.19753 1.21306 1.17935 0.85865 0.91024 0.91642 0.81356 0.83458 0.84507 0.73294 0.87354 0.87126 0.99479 0.99664 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -6.19 9.91 -93.29 -0.92 -7.11 16 3 C 0.11 2.55 6.70 22.60 0.15 2.70 16 4 C -0.17 -3.39 8.82 22.37 0.20 -3.20 16 5 C -0.02 -0.47 6.32 22.33 0.14 -0.33 16 6 Cl -0.06 -1.09 28.95 -2.72 -0.08 -1.17 16 7 C -0.13 -3.17 9.82 22.29 0.22 -2.95 16 8 C -0.11 -3.28 8.72 22.37 0.20 -3.08 16 9 C 0.11 3.29 6.45 38.17 0.25 3.54 16 10 N -0.65 -19.10 5.29 -303.10 -1.60 -20.71 16 11 C 0.51 19.53 7.64 87.66 0.67 20.20 16 12 O -0.56 -26.14 13.15 -3.07 -0.04 -26.18 16 13 C -0.12 -4.53 5.64 29.85 0.17 -4.36 16 14 C 0.04 2.26 4.26 29.85 0.13 2.39 16 15 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 16 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 17 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 18 N -0.94 -58.88 13.29 21.45 0.28 -58.59 16 19 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 23 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.07 0.51 7.65 -2.38 -0.02 0.50 16 25 H 0.06 0.56 7.68 -2.39 -0.02 0.54 16 26 H 0.17 2.23 6.30 -2.91 -0.02 2.21 16 27 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.14 5.00 5.79 -2.91 -0.02 4.99 16 29 H 0.43 9.68 8.35 -92.71 -0.77 8.90 16 30 H 0.11 3.68 8.14 -2.38 -0.02 3.66 16 31 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 32 H -0.01 -0.81 8.10 -2.38 -0.02 -0.83 16 33 H -0.02 -0.93 8.10 -2.39 -0.02 -0.95 16 34 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -73.75 310.68 3.95 -69.80 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.36 Total: 11.89 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 3.92 Total: -13.88 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -1.32 Total: -79.30 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.96 Total: -33.29 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -73.75 3.95 -69.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812550699.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.280 kcal (2) G-P(sol) polarization free energy of solvation -73.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds