Wall clock time and date at job start Tue Mar 31 2020 05:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 H 1.07998 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99248 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47166 * 89.99890 * 8 6 4 10 10 H 1.48491 * 109.47208 * 210.00081 * 8 6 4 11 11 H 1.48505 * 109.47202 * 330.00211 * 8 6 4 12 12 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 13 13 H 1.08996 * 109.46703 * 63.95759 * 12 2 1 14 14 C 1.50704 * 109.47079 * 183.95610 * 12 2 1 15 15 O 1.20824 * 119.99967 * 0.02562 * 14 12 2 16 16 O 1.34228 * 119.99800 * 180.02562 * 14 12 2 17 17 C 1.50700 * 109.46975 * 303.95480 * 12 2 1 18 18 C 1.38270 * 119.99034 * 139.99941 * 17 12 2 19 19 C 1.38220 * 120.02272 * 179.97438 * 18 17 12 20 20 C 1.38226 * 120.01669 * 359.97438 * 19 18 17 21 21 C 1.38332 * 119.98664 * 0.02562 * 20 19 18 22 22 Cl 1.73601 * 120.01331 * 180.02562 * 21 20 19 23 23 C 1.38187 * 119.99790 * 319.72403 * 17 12 2 24 24 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 25 25 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 26 26 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 27 27 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 28 28 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 29 29 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 30 30 H 0.96698 * 116.99687 * 179.97438 * 16 14 12 31 31 H 1.07999 * 119.98737 * 359.97438 * 18 17 12 32 32 H 1.08006 * 119.98772 * 179.97438 * 19 18 17 33 33 H 1.08007 * 120.00674 * 180.02562 * 20 19 18 34 34 H 1.08004 * 120.00516 * 0.02562 * 23 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0270 3.3494 1.5285 7 7 2.7113 4.0021 0.6147 8 14 1.5832 4.1867 3.1383 9 1 2.6606 3.9504 4.1326 10 1 1.4303 5.6462 2.9115 11 1 0.3059 3.6289 3.6508 12 6 1.9954 -0.7660 -1.1377 13 1 1.7044 -0.2798 -2.0687 14 6 3.4988 -0.8256 -1.0506 15 8 4.0727 -0.2858 -0.1346 16 8 4.2001 -1.4783 -1.9907 17 6 1.4345 -2.1643 -1.1043 18 6 1.0505 -2.7832 -2.2796 19 6 0.5365 -4.0659 -2.2498 20 6 0.4065 -4.7310 -1.0451 21 6 0.7905 -4.1123 0.1311 22 17 0.6282 -4.9472 1.6445 23 6 1.3093 -2.8300 0.1002 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3633 0.5740 0.8525 27 1 3.0798 1.3443 -0.1082 28 1 1.5612 1.9273 -0.8309 29 1 2.9859 4.9182 0.7767 30 1 5.1620 -1.4889 -1.8925 31 1 1.1523 -2.2642 -3.2212 32 1 0.2364 -4.5487 -3.1682 33 1 0.0052 -5.7335 -1.0220 34 1 1.6131 -2.3480 1.0178 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830723087.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:23 Heat of formation + Delta-G solvation = -54.503131 kcal Electronic energy + Delta-G solvation = -20164.278178 eV Core-core repulsion = 16895.571849 eV Total energy + Delta-G solvation = -3268.706329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.39460 -39.05632 -36.81325 -36.29441 -35.37907 -32.82893 -31.38871 -30.74844 -27.83756 -27.15238 -24.25194 -22.71995 -22.53591 -21.39824 -19.79624 -17.73747 -17.16261 -16.46321 -16.16502 -15.74687 -15.34404 -14.95174 -14.56030 -14.12106 -13.69159 -13.66547 -13.37789 -13.26244 -12.54651 -12.20451 -12.00808 -11.66753 -11.46485 -11.43601 -11.37016 -11.11807 -10.90179 -10.85244 -10.58197 -10.51723 -10.11685 -9.67303 -9.17686 -8.81701 -8.67927 -8.34485 -7.45861 -5.98388 -3.97811 1.10370 1.25674 2.14643 2.65865 3.23263 3.35841 3.41401 3.44344 3.64622 4.44177 4.61032 4.72595 4.93187 5.05327 5.21268 5.36694 5.39591 5.51433 5.64066 5.68615 5.90319 6.02257 6.19550 6.25191 6.26508 6.49433 6.65924 6.76104 6.82932 7.22262 7.24790 7.77332 8.05388 8.12107 8.33648 8.51843 9.07046 9.64180 11.13210 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.005226 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.021142 B = 5356.778680 C = 6100.329826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.519 5.519 3 C 0.176 3.824 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.135 3.865 13 H 0.078 0.922 14 C 0.476 3.524 15 O -0.464 6.464 16 O -0.524 6.524 17 C -0.061 4.061 18 C -0.098 4.098 19 C -0.113 4.113 20 C -0.111 4.111 21 C -0.040 4.040 22 Cl -0.075 7.075 23 C -0.075 4.075 24 H 0.051 0.949 25 H 0.016 0.984 26 H 0.084 0.916 27 H 0.061 0.939 28 H -0.012 1.012 29 H 0.260 0.740 30 H 0.405 0.595 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.395 -16.885 -7.102 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.245 5.245 3 C 0.052 3.948 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C 0.025 3.975 13 H 0.095 0.905 14 C 0.315 3.685 15 O -0.347 6.347 16 O -0.336 6.336 17 C -0.062 4.062 18 C -0.116 4.116 19 C -0.131 4.131 20 C -0.130 4.130 21 C -0.066 4.066 22 Cl -0.046 7.046 23 C -0.094 4.094 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.006 0.994 29 H 0.070 0.930 30 H 0.263 0.737 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.428 -16.822 -6.329 18.297 hybrid contribution 0.200 0.954 0.276 1.013 sum -3.227 -15.868 -6.054 17.287 Atomic orbital electron populations 1.22311 0.87254 1.00279 1.01293 1.62101 1.07470 1.18783 1.36194 1.20173 0.97748 0.79905 0.96941 1.21038 1.34597 0.96723 1.01444 0.91876 1.24950 0.95364 0.97346 0.96923 1.69955 1.38509 1.11409 1.34026 0.86494 0.78817 0.78334 0.83719 1.20644 1.21400 1.19884 1.19953 0.87338 0.92873 0.97375 0.90487 1.23075 0.90761 0.75310 0.79363 1.90794 1.71132 1.40076 1.32727 1.84497 1.25678 1.71217 1.52221 1.19434 0.99267 0.94440 0.93035 1.21143 0.97590 0.95099 0.97817 1.20994 1.00039 0.94721 0.97377 1.21032 1.00598 1.00347 0.91051 1.20905 1.04445 0.94173 0.87085 1.98364 1.96513 1.77965 1.31744 1.21126 0.96756 0.91856 0.99676 0.93054 0.96561 0.89763 0.92111 0.99422 0.93015 0.73678 0.85247 0.85108 0.85233 0.83431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 8.95 60.07 0.54 1.22 16 2 N -0.52 -11.00 3.77 -239.13 -0.90 -11.90 16 3 C 0.18 4.63 4.32 -4.97 -0.02 4.61 16 4 C -0.50 -14.20 8.46 -34.44 -0.29 -14.49 16 5 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 7 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 12 C 0.13 2.37 2.19 -70.01 -0.15 2.22 16 13 H 0.08 1.28 8.00 -51.93 -0.42 0.86 16 14 C 0.48 8.71 7.25 36.01 0.26 8.97 16 15 O -0.46 -10.52 14.64 -18.75 -0.27 -10.80 16 16 O -0.52 -7.26 13.34 -39.25 -0.52 -7.78 16 17 C -0.06 -0.89 3.69 -104.63 -0.39 -1.28 16 18 C -0.10 -1.16 9.67 -39.58 -0.38 -1.54 16 19 C -0.11 -1.14 10.04 -39.59 -0.40 -1.54 16 20 C -0.11 -1.21 9.83 -39.55 -0.39 -1.60 16 21 C -0.04 -0.52 6.32 -39.50 -0.25 -0.77 16 22 Cl -0.07 -0.94 28.96 -51.86 -1.50 -2.44 16 23 C -0.08 -1.13 7.86 -39.55 -0.31 -1.44 16 24 H 0.05 0.84 6.12 -51.93 -0.32 0.52 16 25 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.08 1.71 6.76 -51.93 -0.35 1.36 16 27 H 0.06 1.75 5.21 -51.93 -0.27 1.48 16 28 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.41 3.90 9.10 45.56 0.41 4.32 16 31 H 0.13 1.30 8.04 -52.49 -0.42 0.88 16 32 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 33 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 34 H 0.15 2.53 7.73 -52.48 -0.41 2.12 16 LS Contribution 307.67 15.07 4.64 4.64 Total: -1.00 -32.98 307.67 -7.70 -40.68 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -2.97 Total: 1.16 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.88 Total: -4.15 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.16 Total: -38.35 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.80 Total: -18.58 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.98 -7.70 -40.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830723087.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.824 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds