Wall clock time and date at job start Tue Mar 31 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46896 * 110.99895 * 2 1 4 4 C 1.46898 * 111.00273 * 123.95688 * 2 1 3 5 5 H 1.09001 * 109.46741 * 300.42312 * 4 2 1 6 6 C 1.50700 * 109.47234 * 60.41833 * 4 2 1 7 7 O 1.21205 * 119.99899 * 27.38763 * 6 4 2 8 8 O 1.34311 * 119.99884 * 207.38538 * 6 4 2 9 9 C 1.34924 * 116.99792 * 180.02562 * 8 6 4 10 10 H 1.07999 * 119.99670 * 359.97438 * 9 8 6 11 11 C 1.38756 * 119.99837 * 180.02562 * 9 8 6 12 12 N 1.31444 * 120.00229 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99782 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47142 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.46916 * 119.99750 * 13 11 9 16 16 H 1.48500 * 109.47270 * 239.99379 * 13 11 9 17 17 C 1.50695 * 109.47497 * 180.42259 * 4 2 1 18 18 C 1.38240 * 119.98442 * 313.24157 * 17 4 2 19 19 C 1.38220 * 120.01198 * 179.72641 * 18 17 4 20 20 C 1.38352 * 119.98787 * 0.54476 * 19 18 17 21 21 Cl 1.73601 * 120.01411 * 179.75179 * 20 19 18 22 22 C 1.38358 * 119.97083 * 359.72959 * 20 19 18 23 23 C 1.38213 * 119.98622 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47435 * 296.04428 * 1 2 3 25 25 H 1.09000 * 109.47162 * 56.04590 * 1 2 3 26 26 H 1.09007 * 109.47387 * 176.04648 * 1 2 3 27 27 H 1.09009 * 109.47365 * 189.39913 * 3 2 1 28 28 H 1.08998 * 109.47307 * 309.39922 * 3 2 1 29 29 H 1.09003 * 109.47359 * 69.39978 * 3 2 1 30 30 H 0.96995 * 119.99649 * 180.02562 * 12 11 9 31 31 H 1.07997 * 119.99499 * 0.02562 * 18 17 4 32 32 H 1.08002 * 120.00524 * 180.27538 * 19 18 17 33 33 H 1.07995 * 120.00467 * 179.97438 * 22 20 19 34 34 H 1.07993 * 119.99247 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 1.6398 -0.3246 2.0685 6 6 1.5207 -2.1933 1.0449 7 8 1.2637 -2.6775 -0.0361 8 8 1.3824 -2.9287 2.1602 9 6 0.9540 -4.1990 2.0071 10 1 0.7389 -4.5810 1.0200 11 6 0.7888 -5.0140 3.1178 12 7 1.0501 -4.5489 4.3191 13 14 0.1950 -6.7724 2.9058 14 1 -0.0274 -7.0494 1.4639 15 1 1.2182 -7.7079 3.4380 16 1 -1.0783 -6.9577 3.6472 17 6 3.5018 -0.7349 1.1100 18 6 4.1765 -0.9831 -0.0707 19 6 5.5581 -0.9491 -0.0978 20 6 6.2659 -0.6778 1.0595 21 17 8.0013 -0.6413 1.0277 22 6 5.5902 -0.4350 2.2422 23 6 4.2086 -0.4632 2.2667 24 1 -0.3634 0.4512 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3634 -1.0253 -0.0709 27 1 3.0722 1.3473 -0.1678 28 1 1.5166 1.9444 -0.7941 29 1 1.7880 1.8402 0.9620 30 1 0.9350 -5.1188 5.0954 31 1 3.6240 -1.1989 -0.9732 32 1 6.0850 -1.1387 -1.0213 33 1 6.1422 -0.2235 3.1460 34 1 3.6810 -0.2733 3.1897 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848801276.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:01 Heat of formation + Delta-G solvation = -47.481691 kcal Electronic energy + Delta-G solvation = -20104.735766 eV Core-core repulsion = 16836.333909 eV Total energy + Delta-G solvation = -3268.401857 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.00964 -38.63323 -37.01404 -36.20263 -34.85059 -32.18726 -31.50105 -30.90840 -27.84239 -26.97770 -25.23658 -22.90179 -22.39424 -21.76641 -19.50098 -17.75228 -17.13028 -16.74585 -15.77220 -15.64980 -14.97089 -14.52829 -14.37821 -14.29257 -13.91734 -13.50741 -13.32609 -13.28445 -12.84235 -12.20292 -12.14692 -11.96940 -11.61470 -11.52344 -11.38739 -11.26909 -11.17191 -11.00276 -10.70818 -10.41258 -10.31118 -9.83193 -9.15302 -8.86834 -8.58918 -8.36561 -8.15286 -6.42637 -4.10006 1.21064 1.46565 2.18378 3.08036 3.18189 3.25530 3.43136 3.69156 3.77881 4.14618 4.69496 4.92415 4.94221 5.02701 5.15654 5.29412 5.43569 5.50064 5.53354 5.67401 5.69710 5.81141 5.81905 5.95949 6.12787 6.26413 6.33258 6.37331 6.57887 6.68094 6.92352 7.14712 7.20907 7.39366 7.93780 8.70690 9.06581 9.84589 10.75366 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.005621 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.600066 B = 4980.015946 C = 6273.281310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.522 5.522 3 C 0.025 3.975 4 C 0.142 3.858 5 H 0.072 0.928 6 C 0.405 3.595 7 O -0.531 6.531 8 O -0.214 6.214 9 C -0.379 4.379 10 H 0.096 0.904 11 C 0.043 3.957 12 N -0.865 5.865 13 Si 0.941 3.059 14 H -0.265 1.265 15 H -0.276 1.276 16 H -0.276 1.276 17 C -0.067 4.067 18 C -0.070 4.070 19 C -0.118 4.118 20 C -0.033 4.033 21 Cl -0.082 7.082 22 C -0.114 4.114 23 C -0.088 4.088 24 H 0.024 0.976 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.269 0.731 31 H 0.143 0.857 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.697 11.125 -4.538 13.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.247 5.247 3 C -0.123 4.123 4 C 0.033 3.967 5 H 0.090 0.910 6 C 0.250 3.750 7 O -0.426 6.426 8 O -0.121 6.121 9 C -0.455 4.455 10 H 0.114 0.886 11 C -0.161 4.161 12 N -0.502 5.502 13 Si 0.766 3.234 14 H -0.189 1.189 15 H -0.201 1.201 16 H -0.202 1.202 17 C -0.068 4.068 18 C -0.088 4.088 19 C -0.137 4.137 20 C -0.059 4.059 21 Cl -0.053 7.053 22 C -0.133 4.133 23 C -0.106 4.106 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.917 10.676 -5.017 13.675 hybrid contribution -0.388 -0.502 0.782 1.007 sum 6.529 10.174 -4.235 12.809 Atomic orbital electron populations 1.22472 0.86334 1.03814 1.00009 1.61660 1.08612 1.12917 1.41474 1.22427 1.01290 0.88260 1.00291 1.19867 0.91342 0.91672 0.93845 0.91037 1.22553 0.80316 0.88088 0.84049 1.90558 1.50195 1.72388 1.29499 1.83870 1.70571 1.25023 1.32602 1.21264 1.44534 0.84290 0.95456 0.88612 1.25321 0.96661 0.99974 0.94177 1.69997 1.45413 1.36776 0.97976 0.85638 0.78382 0.80407 0.79002 1.18902 1.20147 1.20173 1.19513 0.93530 0.99727 0.93988 1.21110 0.92792 0.96064 0.98838 1.21031 0.94077 1.01385 0.97202 1.20934 0.83845 1.05271 0.95861 1.98347 1.10993 1.97097 1.98871 1.20932 0.94105 1.01492 0.96754 1.21053 0.93228 0.98307 0.98043 0.95700 0.91194 0.89990 0.91096 0.91181 0.95567 0.92143 0.83894 0.85047 0.84947 0.84715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.22 60.06 0.55 0.89 16 2 N -0.52 -8.51 4.14 -246.01 -1.02 -9.53 16 3 C 0.03 0.32 9.11 60.06 0.55 0.86 16 4 C 0.14 2.66 2.17 -70.02 -0.15 2.51 16 5 H 0.07 1.29 7.94 -51.93 -0.41 0.87 16 6 C 0.41 9.89 5.99 36.01 0.22 10.11 16 7 O -0.53 -13.99 14.79 -19.05 -0.28 -14.27 16 8 O -0.21 -6.06 9.75 -20.71 -0.20 -6.27 16 9 C -0.38 -11.13 9.65 30.92 0.30 -10.83 16 10 H 0.10 2.84 6.86 -52.49 -0.36 2.48 16 11 C 0.04 1.19 5.49 -17.53 -0.10 1.10 16 12 N -0.86 -25.13 13.67 55.48 0.76 -24.37 16 13 Si 0.94 21.26 29.55 -169.99 -5.02 16.23 16 14 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 17 C -0.07 -1.13 3.64 -104.62 -0.38 -1.51 16 18 C -0.07 -1.12 8.37 -39.59 -0.33 -1.45 16 19 C -0.12 -1.68 9.83 -39.55 -0.39 -2.07 16 20 C -0.03 -0.45 6.32 -39.50 -0.25 -0.70 16 21 Cl -0.08 -1.01 28.96 -51.86 -1.50 -2.52 16 22 C -0.11 -1.59 9.83 -39.55 -0.39 -1.98 16 23 C -0.09 -1.35 9.67 -39.59 -0.38 -1.73 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.90 8.06 -51.93 -0.42 0.49 16 26 H 0.08 1.54 6.41 -51.92 -0.33 1.21 16 27 H 0.07 0.88 6.56 -51.92 -0.34 0.53 16 28 H 0.07 0.75 8.03 -51.93 -0.42 0.33 16 29 H 0.03 0.31 8.13 -51.93 -0.42 -0.12 16 30 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.14 2.40 7.93 -52.49 -0.42 1.98 16 32 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.14 1.91 7.99 -52.49 -0.42 1.50 16 LS Contribution 311.91 15.07 4.70 4.70 Total: -1.00 -32.00 311.91 -7.27 -39.27 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.94 Total: 1.56 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.76 Total: -4.81 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: -0.26 Total: -33.90 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.48 Total: -20.53 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.00 -7.27 -39.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848801276.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.212 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds