Wall clock time and date at job start Tue Mar 31 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99819 * 2 1 4 4 H 1.48495 * 109.46963 * 269.99655 * 3 2 1 5 5 H 1.48492 * 109.47052 * 29.99887 * 3 2 1 6 6 H 1.48504 * 109.47046 * 149.99932 * 3 2 1 7 7 C 1.37871 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99871 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00284 * 0.02562 * 7 2 1 10 10 C 1.53115 * 109.52523 * 179.97438 * 9 7 2 11 11 C 1.53030 * 109.27843 * 177.55764 * 10 9 7 12 12 N 1.46849 * 109.52776 * 300.82421 * 11 10 9 13 13 C 1.38538 * 111.00403 * 185.83925 * 12 11 10 14 14 C 1.39572 * 120.48943 * 180.02562 * 13 12 11 15 15 C 1.38277 * 118.44176 * 180.02562 * 14 13 12 16 16 Cl 1.73596 * 120.38322 * 180.02562 * 15 14 13 17 17 N 1.32654 * 119.23836 * 359.97438 * 15 14 13 18 18 C 1.32288 * 120.92837 * 0.02562 * 17 15 14 19 19 O 1.35447 * 119.14994 * 179.97438 * 18 17 15 20 20 N 1.32289 * 121.70225 * 0.02562 * 18 17 15 21 21 C 1.46846 * 111.19758 * 61.73719 * 12 11 10 22 22 C 1.53033 * 109.52634 * 298.26332 * 21 12 11 23 23 H 0.97003 * 120.00059 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.57005 * 59.83684 * 9 7 2 25 25 H 1.09006 * 109.50320 * 57.62195 * 10 9 7 26 26 H 1.08997 * 109.50451 * 297.50139 * 10 9 7 27 27 H 1.08999 * 109.46413 * 180.80721 * 11 10 9 28 28 H 1.08996 * 109.46263 * 60.84057 * 11 10 9 29 29 H 1.08000 * 120.77845 * 0.03918 * 14 13 12 30 30 H 0.96708 * 113.99781 * 90.00193 * 19 18 17 31 31 H 1.09009 * 109.45756 * 58.27976 * 21 12 11 32 32 H 1.08996 * 109.46265 * 178.24303 * 21 12 11 33 33 H 1.09002 * 109.50302 * 299.23618 * 22 21 12 34 34 H 1.08994 * 109.50551 * 179.11517 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2450 -3.6638 0.0005 11 6 1.4752 -4.9850 0.0621 12 7 0.6543 -5.0185 1.2793 13 6 0.0449 -6.2531 1.4333 14 6 -0.7841 -6.5019 2.5282 15 6 -1.3703 -7.7492 2.6404 16 17 -2.4107 -8.1130 3.9816 17 7 -1.1293 -8.6644 1.7109 18 6 -0.3387 -8.3988 0.6841 19 8 -0.1170 -9.3602 -0.2440 20 7 0.2419 -7.2188 0.5407 21 6 -0.3394 -3.9374 1.2795 22 6 0.3762 -2.5849 1.2543 23 1 -0.4850 0.8401 -0.0004 24 1 0.6219 -2.5575 -0.8877 25 1 2.8998 -3.5835 0.8683 26 1 2.8421 -3.6327 -0.9108 27 1 2.1805 -5.8159 0.0767 28 1 0.8310 -5.0710 -0.8129 29 1 -0.9636 -5.7381 3.2703 30 1 -0.7492 -9.3536 -0.9758 31 1 -0.9752 -4.0284 0.3987 32 1 -0.9521 -4.0074 2.1782 33 1 1.0016 -2.4875 2.1417 34 1 -0.3617 -1.7829 1.2386 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858477216.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:05 Heat of formation + Delta-G solvation = 12.128419 kcal Electronic energy + Delta-G solvation = -19891.697815 eV Core-core repulsion = 16658.173598 eV Total energy + Delta-G solvation = -3233.524217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41742 -38.86726 -37.54667 -36.75497 -34.64000 -32.90464 -31.80944 -30.23233 -30.02215 -26.21501 -24.45714 -23.70763 -22.14488 -21.83606 -19.26307 -18.91783 -18.01788 -17.21402 -16.47104 -15.99868 -15.44716 -14.99700 -14.62223 -14.52288 -13.97948 -13.71224 -13.07361 -12.70238 -12.53933 -12.35277 -12.21583 -11.70589 -11.60248 -11.24811 -11.11632 -11.01982 -10.71178 -10.55786 -10.42401 -10.20741 -9.78595 -9.60990 -9.44104 -9.13589 -8.88876 -8.41654 -8.33089 -6.08393 -4.13615 0.60582 0.84338 1.35911 2.87691 3.26089 3.33458 3.36746 3.45433 3.59572 4.36992 4.37982 4.63895 4.99348 5.15128 5.22381 5.39945 5.57753 5.74506 5.79093 5.89227 6.11251 6.15976 6.32975 6.51691 6.65018 6.83167 6.86168 7.10107 7.18221 7.25006 7.32635 7.62848 7.85459 7.86451 7.97506 8.34435 8.89752 9.51927 10.98303 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.028866 B = 0.003958 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.758440 B = 7072.394404 C = 7794.913445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.045 3.955 10 C -0.112 4.112 11 C 0.067 3.933 12 N -0.460 5.460 13 C 0.402 3.598 14 C -0.242 4.242 15 C 0.255 3.745 16 Cl -0.014 7.014 17 N -0.557 5.557 18 C 0.538 3.462 19 O -0.455 6.455 20 N -0.560 5.560 21 C 0.060 3.940 22 C -0.108 4.108 23 H 0.261 0.739 24 H 0.025 0.975 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.163 0.837 30 H 0.413 0.587 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.660 -13.200 3.554 14.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.026 3.974 10 C -0.150 4.150 11 C -0.059 4.059 12 N -0.175 5.175 13 C 0.160 3.840 14 C -0.269 4.269 15 C 0.086 3.914 16 Cl 0.015 6.985 17 N -0.289 5.289 18 C 0.231 3.769 19 O -0.258 6.258 20 N -0.293 5.293 21 C -0.064 4.064 22 C -0.146 4.146 23 H 0.071 0.929 24 H 0.043 0.957 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.180 0.820 30 H 0.272 0.728 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.916 -13.838 3.653 14.838 hybrid contribution -0.517 1.253 -0.113 1.361 sum -4.433 -12.585 3.541 13.805 Atomic orbital electron populations 1.69839 1.05901 1.26566 1.50901 1.24960 0.94859 0.99115 0.94973 0.86602 0.79924 0.83434 0.78108 1.20733 1.21244 1.19896 1.21162 0.92995 0.90390 1.50408 0.92536 1.18743 0.92746 0.92059 0.93826 1.21803 0.98896 0.93076 1.01191 1.22196 0.95875 1.00146 0.87649 1.58911 1.20904 0.99363 1.38371 1.20103 0.85363 0.91102 0.87434 1.22060 1.03904 0.98608 1.02328 1.21341 0.91438 0.89045 0.89624 1.98429 1.64105 1.95267 1.40712 1.67194 1.20662 1.35973 1.05024 1.19706 0.86260 0.83946 0.86951 1.84714 1.56382 1.49235 1.35445 1.68047 1.28729 1.01903 1.30621 1.22652 0.91894 0.91175 1.00714 1.21811 1.00705 0.91884 1.00201 0.92936 0.95658 0.92205 0.92089 0.90636 0.93251 0.81988 0.72780 0.93595 0.91001 0.93085 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.00 11.37 55.43 0.63 -23.37 16 2 C 0.06 1.62 5.31 -17.82 -0.09 1.53 16 3 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.51 -13.23 8.56 -34.44 -0.29 -13.53 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.04 1.03 2.16 -91.65 -0.20 0.83 16 10 C -0.11 -2.18 5.32 -26.66 -0.14 -2.32 16 11 C 0.07 1.17 4.67 -3.84 -0.02 1.15 16 12 N -0.46 -7.76 4.68 -173.09 -0.81 -8.57 16 13 C 0.40 6.30 6.41 -154.82 -0.99 5.31 16 14 C -0.24 -3.30 9.06 -39.07 -0.35 -3.65 16 15 C 0.26 3.43 7.32 -17.18 -0.13 3.31 16 16 Cl -0.01 -0.15 29.15 -51.86 -1.51 -1.66 16 17 N -0.56 -8.09 10.45 -11.91 -0.12 -8.21 16 18 C 0.54 7.79 8.71 -91.30 -0.80 6.99 16 19 O -0.45 -5.40 13.64 -18.03 -0.25 -5.65 16 20 N -0.56 -8.83 8.87 -13.98 -0.12 -8.96 16 21 C 0.06 1.03 5.25 -3.84 -0.02 1.01 16 22 C -0.11 -2.28 5.12 -26.65 -0.14 -2.41 16 23 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.08 1.27 7.72 -51.93 -0.40 0.87 16 28 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 29 H 0.16 1.91 7.22 -52.49 -0.38 1.53 16 30 H 0.41 2.64 9.06 45.56 0.41 3.05 16 31 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.07 1.07 6.74 -51.93 -0.35 0.72 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.10 2.46 6.17 -51.93 -0.32 2.14 16 LS Contribution 298.71 15.07 4.50 4.50 Total: -1.00 -28.36 298.71 -8.99 -37.35 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -3.11 Total: 0.97 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -3.17 Total: -1.79 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.43 Total: -49.11 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.25 Total: -5.65 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.51 Total: -1.66 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.36 -8.99 -37.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858477216.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.477 kcal (2) G-P(sol) polarization free energy of solvation -28.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds