Wall clock time and date at job start Tue Mar 31 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08998 * 109.50839 * 300.28341 * 9 7 2 11 11 C 1.53124 * 109.50158 * 60.36214 * 9 7 2 12 12 C 1.53121 * 109.16108 * 177.59378 * 11 9 7 13 13 C 1.53034 * 109.27653 * 302.34293 * 12 11 9 14 14 N 1.46845 * 109.52662 * 59.18031 * 13 12 11 15 15 C 1.38539 * 111.00323 * 174.15796 * 14 13 12 16 16 C 1.39571 * 120.48763 * 55.76545 * 15 14 13 17 17 C 1.38282 * 118.44119 * 179.77820 * 16 15 14 18 18 Cl 1.73601 * 120.37875 * 180.26549 * 17 16 15 19 19 N 1.32642 * 119.23836 * 0.49981 * 17 16 15 20 20 C 1.32292 * 120.92809 * 359.74526 * 19 17 16 21 21 O 1.35456 * 119.15072 * 180.02562 * 20 19 17 22 22 N 1.32293 * 121.70349 * 359.97438 * 20 19 17 23 23 C 1.46852 * 111.23290 * 298.27981 * 14 13 12 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.51694 * 297.49548 * 11 9 7 26 26 H 1.08997 * 109.52437 * 57.62357 * 11 9 7 27 27 H 1.09000 * 109.50221 * 62.28486 * 12 11 9 28 28 H 1.09001 * 109.50111 * 182.39859 * 12 11 9 29 29 H 1.09003 * 109.46303 * 179.19730 * 13 12 11 30 30 H 1.09004 * 109.46614 * 299.16171 * 13 12 11 31 31 H 1.07997 * 120.78039 * 0.03019 * 16 15 14 32 32 H 0.96700 * 113.99964 * 269.97660 * 21 20 19 33 33 H 1.09002 * 109.42321 * 301.68140 * 23 14 13 34 34 H 1.08995 * 109.49687 * 181.71855 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6243 -2.5534 0.8954 11 6 0.3720 -2.5875 -1.2452 12 6 -0.3436 -3.9411 -1.2619 13 6 0.6965 -5.0629 -1.2230 14 7 1.5114 -4.9348 -0.0081 15 6 2.3766 -6.0086 0.1250 16 6 3.2707 -6.3286 -0.8978 17 6 4.1184 -7.4063 -0.7183 18 17 5.2552 -7.8445 -1.9550 19 7 4.0497 -8.1041 0.4076 20 6 3.1878 -7.7795 1.3572 21 8 3.1486 -8.5167 2.4929 22 7 2.3638 -6.7527 1.2268 23 6 2.2450 -3.6628 0.0085 24 1 -0.4850 0.8400 0.0004 25 1 -0.3660 -1.7854 -1.2290 26 1 0.9940 -2.4922 -2.1352 27 1 -0.9954 -4.0188 -0.3917 28 1 -0.9381 -4.0272 -2.1714 29 1 0.1898 -6.0280 -1.2203 30 1 1.3393 -4.9929 -2.1005 31 1 3.3027 -5.7456 -1.8064 32 1 2.5336 -9.2621 2.4569 33 1 2.8811 -3.5996 -0.8744 34 1 2.8625 -3.6106 0.9052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858620988.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:07 Heat of formation + Delta-G solvation = 17.174626 kcal Electronic energy + Delta-G solvation = -19977.556922 eV Core-core repulsion = 16744.251525 eV Total energy + Delta-G solvation = -3233.305397 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.46087 -38.85619 -37.56075 -36.80142 -34.49862 -33.09270 -31.87324 -30.31594 -29.94295 -25.12603 -24.91702 -24.28999 -22.32608 -21.63253 -19.44357 -18.76328 -18.13739 -17.27238 -16.26820 -15.99090 -15.47278 -15.11483 -14.70551 -14.45341 -14.01022 -13.59389 -12.89810 -12.78694 -12.62817 -12.36903 -12.15868 -11.92515 -11.73591 -11.29247 -11.00844 -10.91145 -10.82975 -10.45391 -10.30680 -10.00765 -9.75355 -9.62842 -9.46562 -9.27474 -8.86758 -8.41945 -8.19723 -6.05863 -4.12910 0.49711 0.67645 1.29648 2.81418 3.28588 3.30029 3.33786 3.36902 3.59633 4.36671 4.44688 4.48378 4.98745 5.09216 5.24108 5.29366 5.46531 5.60066 5.80201 5.93803 6.09178 6.26049 6.42498 6.50726 6.53792 6.74048 6.94459 7.16454 7.19692 7.25377 7.42251 7.66328 7.87227 7.93629 8.03895 8.33454 8.89782 9.52165 11.00262 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.021117 B = 0.004363 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.644886 B = 6416.149040 C = 6649.265360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.057 3.943 10 H 0.040 0.960 11 C -0.113 4.113 12 C -0.117 4.117 13 C 0.070 3.930 14 N -0.500 5.500 15 C 0.413 3.587 16 C -0.251 4.251 17 C 0.249 3.751 18 Cl -0.013 7.013 19 N -0.537 5.537 20 C 0.523 3.477 21 O -0.451 6.451 22 N -0.506 5.506 23 C 0.077 3.923 24 H 0.262 0.738 25 H 0.096 0.904 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.161 0.839 32 H 0.413 0.587 33 H 0.035 0.965 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.668 -14.893 -4.033 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.073 0.927 9 C 0.038 3.962 10 H 0.058 0.942 11 C -0.152 4.152 12 C -0.154 4.154 13 C -0.057 4.057 14 N -0.223 5.223 15 C 0.174 3.826 16 C -0.278 4.278 17 C 0.077 3.923 18 Cl 0.015 6.985 19 N -0.266 5.266 20 C 0.218 3.782 21 O -0.254 6.254 22 N -0.232 5.232 23 C -0.047 4.047 24 H 0.072 0.928 25 H 0.114 0.886 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.179 0.821 32 H 0.272 0.728 33 H 0.053 0.947 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.649 -15.000 -2.592 15.654 hybrid contribution 0.906 0.830 -1.491 1.932 sum 4.556 -14.170 -4.083 15.434 Atomic orbital electron populations 1.69862 1.05850 1.26688 1.50065 1.24900 0.94841 0.98984 0.94840 0.86657 0.79616 0.83083 0.78638 1.20295 1.21235 1.20252 1.21016 0.92830 0.90321 1.51601 0.92732 1.18704 0.92445 0.89645 0.95399 0.94180 1.21714 1.00236 0.94732 0.98468 1.21703 0.96862 0.95798 1.01081 1.22204 0.95349 1.00103 0.88017 1.58832 1.22706 1.00353 1.40453 1.19891 0.87184 0.89682 0.85862 1.23372 0.99177 1.00130 1.05125 1.21552 0.90827 0.90714 0.89193 1.98436 1.58812 1.92793 1.48466 1.67207 1.25003 1.33131 1.01298 1.19787 0.86065 0.87912 0.84468 1.84753 1.66374 1.44997 1.29228 1.67750 1.23760 1.06520 1.25191 1.22558 0.96692 0.85589 0.99894 0.92824 0.88587 0.94667 0.91484 0.92523 0.91767 0.94308 0.82125 0.72758 0.94724 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.22 11.36 55.43 0.63 -23.59 16 2 C 0.07 1.76 5.31 -17.82 -0.09 1.66 16 3 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -13.53 8.56 -34.44 -0.29 -13.83 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.06 1.34 2.26 -91.69 -0.21 1.13 16 10 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 11 C -0.11 -2.45 5.03 -26.60 -0.13 -2.58 16 12 C -0.12 -2.03 6.09 -26.65 -0.16 -2.20 16 13 C 0.07 1.09 5.05 -3.84 -0.02 1.07 16 14 N -0.50 -8.95 4.69 -173.08 -0.81 -9.76 16 15 C 0.41 6.78 5.71 -154.82 -0.88 5.90 16 16 C -0.25 -3.52 8.64 -39.07 -0.34 -3.85 16 17 C 0.25 3.40 7.32 -17.19 -0.13 3.27 16 18 Cl -0.01 -0.15 29.15 -51.86 -1.51 -1.66 16 19 N -0.54 -7.84 10.45 -11.91 -0.12 -7.96 16 20 C 0.52 7.76 8.71 -91.30 -0.80 6.96 16 21 O -0.45 -5.45 13.64 -18.06 -0.25 -5.70 16 22 N -0.51 -8.49 10.50 -13.98 -0.15 -8.64 16 23 C 0.08 1.55 4.44 -3.83 -0.02 1.53 16 24 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.10 2.35 6.17 -51.93 -0.32 2.03 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 30 H 0.04 0.56 7.18 -51.93 -0.37 0.19 16 31 H 0.16 1.99 7.25 -52.49 -0.38 1.61 16 32 H 0.41 2.57 9.06 45.56 0.41 2.98 16 33 H 0.03 0.66 7.84 -51.93 -0.41 0.25 16 34 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 LS Contribution 300.11 15.07 4.52 4.52 Total: -1.00 -29.09 300.11 -8.92 -38.01 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -3.14 Total: 0.17 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -3.07 Total: -0.93 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.45 Total: -49.96 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.25 Total: -5.70 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.51 Total: -1.66 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.09 -8.92 -38.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858620988.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.185 kcal (2) G-P(sol) polarization free energy of solvation -29.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds