Wall clock time and date at job start Tue Mar 31 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.50700 * 109.47132 * 240.00180 * 2 1 3 5 5 H 1.07995 * 119.99741 * 239.99774 * 4 2 1 6 6 C 1.37875 * 119.99973 * 59.99939 * 4 2 1 7 7 N 1.31512 * 120.00332 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99775 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47386 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47208 * 119.99846 * 8 6 4 11 11 H 1.48503 * 109.46763 * 239.99880 * 8 6 4 12 12 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 13 13 C 1.34777 * 120.00199 * 275.00460 * 12 2 1 14 14 O 1.21513 * 119.99898 * 359.97438 * 13 12 2 15 15 O 1.34638 * 119.99834 * 180.27541 * 13 12 2 16 16 C 1.45201 * 116.99819 * 179.72501 * 15 13 12 17 17 C 1.50706 * 109.47067 * 179.97438 * 16 15 13 18 18 C 1.38261 * 119.99010 * 269.72227 * 17 16 15 19 19 C 1.38220 * 120.02506 * 179.77185 * 18 17 16 20 20 C 1.38237 * 120.01113 * 0.49881 * 19 18 17 21 21 C 1.38331 * 119.98515 * 359.75699 * 20 19 18 22 22 Cl 1.73606 * 120.01139 * 180.02562 * 21 20 19 23 23 C 1.38192 * 119.99037 * 89.99596 * 17 16 15 24 24 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 26 26 H 1.08998 * 109.47338 * 59.99872 * 1 2 3 27 27 H 0.96993 * 120.00188 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00074 * 94.99564 * 12 2 1 29 29 H 1.09003 * 109.47240 * 299.99654 * 16 15 13 30 30 H 1.08997 * 109.47282 * 59.99663 * 16 15 13 31 31 H 1.08005 * 119.98784 * 359.97438 * 18 17 16 32 32 H 1.07996 * 119.99781 * 180.25711 * 19 18 17 33 33 H 1.07993 * 120.01006 * 179.76908 * 20 19 18 34 34 H 1.07989 * 120.01132 * 359.95750 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 3.1464 -2.2869 -3.6038 10 1 1.1660 -1.5866 -4.8160 11 1 3.1466 -0.1872 -4.8164 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8584 1.1609 2.4116 15 8 2.6011 -0.6516 3.4551 16 6 2.7199 0.1364 4.6688 17 6 3.2390 -0.7341 5.7841 18 6 2.3535 -1.4176 6.5967 19 6 2.8289 -2.2199 7.6168 20 6 4.1899 -2.3313 7.8317 21 6 5.0762 -1.6435 7.0224 22 17 6.7856 -1.7834 7.2912 23 6 4.5998 -0.8446 5.9980 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.7089 1.1614 -3.4843 28 1 2.2490 -1.6317 1.1527 29 1 3.4115 0.9619 4.4999 30 1 1.7418 0.5321 4.9424 31 1 1.2899 -1.3271 6.4322 32 1 2.1369 -2.7568 8.2486 33 1 4.5612 -2.9552 8.6311 34 1 5.2913 -0.3077 5.3656 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858925344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:43 Heat of formation + Delta-G solvation = -71.670630 kcal Electronic energy + Delta-G solvation = -18952.705724 eV Core-core repulsion = 15683.254956 eV Total energy + Delta-G solvation = -3269.450768 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.05557 -39.31437 -36.82303 -36.30933 -34.67538 -32.62730 -32.12913 -31.02765 -28.97488 -26.55269 -25.29495 -22.98570 -22.24997 -21.43495 -19.86811 -18.47868 -17.40563 -16.35169 -16.16807 -16.11105 -15.57081 -15.28121 -14.88842 -14.10355 -13.83584 -13.70383 -13.51690 -12.96391 -12.63721 -12.31174 -11.87385 -11.83532 -11.68326 -11.57495 -11.13497 -11.06575 -11.01733 -10.81930 -10.38282 -10.27358 -10.25819 -9.81991 -9.26884 -9.09564 -8.99510 -8.61378 -8.05225 -6.16883 -4.26105 0.77826 0.92780 1.85010 2.80505 3.22886 3.30782 3.34116 3.49002 3.58111 4.29690 4.38951 4.50277 4.74852 4.92764 4.97674 5.15629 5.16855 5.25241 5.40898 5.52227 5.60595 5.89458 6.00056 6.21102 6.45996 6.62764 6.83713 6.92572 7.08207 7.36710 7.50352 7.65930 7.85153 8.08695 8.56553 8.73843 9.16239 9.42200 10.89445 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.026260 B = 0.003082 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.019407 B = 9082.338996 C = 9684.983692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.279 3.721 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.065 0.935 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.685 5.685 13 C 0.635 3.365 14 O -0.584 6.584 15 O -0.376 6.376 16 C 0.128 3.872 17 C -0.077 4.077 18 C -0.090 4.090 19 C -0.111 4.111 20 C -0.105 4.105 21 C -0.039 4.039 22 Cl -0.071 7.071 23 C -0.085 4.085 24 H 0.029 0.971 25 H 0.016 0.984 26 H 0.093 0.907 27 H 0.265 0.735 28 H 0.396 0.604 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.223 -6.078 19.893 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.179 3.821 3 H 0.070 0.930 4 C -0.573 4.573 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.732 3.268 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.341 5.341 13 C 0.386 3.614 14 O -0.474 6.474 15 O -0.291 6.291 16 C 0.053 3.947 17 C -0.077 4.077 18 C -0.108 4.108 19 C -0.129 4.129 20 C -0.123 4.123 21 C -0.065 4.065 22 Cl -0.042 7.042 23 C -0.104 4.104 24 H 0.048 0.952 25 H 0.035 0.965 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.229 0.771 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.156 -5.355 19.829 21.176 hybrid contribution 0.534 -0.783 -0.797 1.239 sum 5.690 -6.138 19.031 20.790 Atomic orbital electron populations 1.22132 0.98219 0.99417 1.01113 1.18853 0.91104 0.93840 0.78307 0.93047 1.21236 1.32639 1.13444 0.89974 0.91719 1.24879 0.94755 0.94964 0.99076 1.69906 1.35808 1.22402 1.23951 0.86333 0.78612 0.79523 0.82289 1.19642 1.20812 1.20818 1.45595 1.67264 1.14043 1.07194 1.18390 0.77639 0.84255 0.81103 1.90944 1.56596 1.14984 1.84858 1.86281 1.80666 1.43662 1.18530 1.21517 1.02053 0.91465 0.79688 1.19581 0.92744 0.99084 0.96336 1.21263 1.00342 0.94878 0.94316 1.21122 0.94723 0.98902 0.98178 1.21112 0.92898 0.99113 0.99205 1.20890 0.85045 1.01558 0.99038 1.98377 1.12660 1.97160 1.96001 1.21036 0.95405 0.97702 0.96265 0.95196 0.96505 0.88810 0.92506 0.77129 0.90250 0.90151 0.84894 0.84732 0.84850 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 2 C 0.28 7.12 2.56 -69.08 -0.18 6.94 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 4 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 5 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.57 11.32 55.43 0.63 -23.95 16 8 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 N -0.69 -14.93 5.07 -59.87 -0.30 -15.24 16 13 C 0.63 13.47 8.71 54.06 0.47 13.94 16 14 O -0.58 -14.07 15.80 -19.28 -0.30 -14.38 16 15 O -0.38 -6.56 10.25 -40.32 -0.41 -6.98 16 16 C 0.13 1.78 5.60 36.01 0.20 1.98 16 17 C -0.08 -0.89 5.52 -104.63 -0.58 -1.47 16 18 C -0.09 -0.88 9.70 -39.58 -0.38 -1.27 16 19 C -0.11 -0.92 10.05 -39.59 -0.40 -1.32 16 20 C -0.10 -0.91 9.83 -39.55 -0.39 -1.30 16 21 C -0.04 -0.40 6.32 -39.50 -0.25 -0.65 16 22 Cl -0.07 -0.69 28.96 -51.86 -1.50 -2.19 16 23 C -0.09 -0.95 9.49 -39.55 -0.38 -1.33 16 24 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.40 7.68 8.65 -40.82 -0.35 7.32 16 29 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 30 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 31 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 316.34 15.07 4.77 4.77 Total: -1.00 -30.05 316.34 -8.06 -38.10 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -3.98 Total: 4.97 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -1.93 Total: -0.57 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.32 Total: -39.18 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.72 Total: -21.36 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.05 -8.06 -38.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858925344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.568 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds