Wall clock time and date at job start Tue Mar 31 2020 05:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.50700 * 109.47132 * 240.00180 * 2 1 3 5 5 H 1.07995 * 119.99741 * 239.99774 * 4 2 1 6 6 C 1.37875 * 119.99973 * 59.99939 * 4 2 1 7 7 N 1.31512 * 120.00332 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99775 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47386 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47208 * 119.99846 * 8 6 4 11 11 H 1.48503 * 109.46763 * 239.99880 * 8 6 4 12 12 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 13 13 C 1.34777 * 120.00199 * 275.00460 * 12 2 1 14 14 O 1.21513 * 119.99898 * 359.97438 * 13 12 2 15 15 O 1.34638 * 119.99834 * 180.27541 * 13 12 2 16 16 C 1.45201 * 116.99819 * 179.72501 * 15 13 12 17 17 C 1.50706 * 109.47067 * 179.97438 * 16 15 13 18 18 C 1.38261 * 119.99010 * 269.72227 * 17 16 15 19 19 C 1.38220 * 120.02506 * 179.77185 * 18 17 16 20 20 C 1.38237 * 120.01113 * 0.49881 * 19 18 17 21 21 C 1.38331 * 119.98515 * 359.75699 * 20 19 18 22 22 Cl 1.73606 * 120.01139 * 180.02562 * 21 20 19 23 23 C 1.38192 * 119.99037 * 89.99596 * 17 16 15 24 24 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 26 26 H 1.08998 * 109.47338 * 59.99872 * 1 2 3 27 27 H 0.96993 * 120.00188 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00074 * 94.99564 * 12 2 1 29 29 H 1.09003 * 109.47240 * 299.99654 * 16 15 13 30 30 H 1.08997 * 109.47282 * 59.99663 * 16 15 13 31 31 H 1.08005 * 119.98784 * 359.97438 * 18 17 16 32 32 H 1.07996 * 119.99781 * 180.25711 * 19 18 17 33 33 H 1.07993 * 120.01006 * 179.76908 * 20 19 18 34 34 H 1.07989 * 120.01132 * 359.95750 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 3.1464 -2.2869 -3.6038 10 1 1.1660 -1.5866 -4.8160 11 1 3.1466 -0.1872 -4.8164 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8584 1.1609 2.4116 15 8 2.6011 -0.6516 3.4551 16 6 2.7199 0.1364 4.6688 17 6 3.2390 -0.7341 5.7841 18 6 2.3535 -1.4176 6.5967 19 6 2.8289 -2.2199 7.6168 20 6 4.1899 -2.3313 7.8317 21 6 5.0762 -1.6435 7.0224 22 17 6.7856 -1.7834 7.2912 23 6 4.5998 -0.8446 5.9980 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.7089 1.1614 -3.4843 28 1 2.2490 -1.6317 1.1527 29 1 3.4115 0.9619 4.4999 30 1 1.7418 0.5321 4.9424 31 1 1.2899 -1.3271 6.4322 32 1 2.1369 -2.7568 8.2486 33 1 4.5612 -2.9552 8.6311 34 1 5.2913 -0.3077 5.3656 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858925344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:42 Heat of formation + Delta-G solvation = -89.447152 kcal Electronic energy + Delta-G solvation = -18953.476572 eV Core-core repulsion = 15683.254956 eV Total energy + Delta-G solvation = -3270.221616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.48646 -40.32135 -38.08200 -37.42644 -36.52707 -34.44818 -33.19425 -31.78191 -30.86849 -27.64606 -27.33146 -23.86592 -23.72045 -22.48256 -21.70683 -20.20047 -18.36474 -18.06330 -17.63045 -17.47846 -16.78702 -16.46960 -16.36956 -15.44254 -15.02490 -14.75963 -14.54855 -14.41652 -14.32317 -13.74790 -13.60259 -13.02978 -12.91510 -12.75875 -12.62790 -12.51079 -12.40599 -12.29483 -12.12888 -11.87159 -11.70402 -11.57459 -11.12402 -10.63525 -10.05922 -9.93066 -9.76356 -8.19641 -6.36922 -0.04196 0.16812 1.08460 1.39995 1.46258 1.49730 1.60629 1.86421 2.41450 2.61469 3.11506 3.35452 3.72596 3.76632 3.96982 4.13396 4.19297 4.31962 4.43785 4.66978 4.70963 4.84351 4.90647 5.03124 5.14500 5.19201 5.28334 5.41052 5.46613 5.54270 5.64734 5.74073 5.83707 6.05696 6.68459 6.78770 7.30355 7.51910 8.87313 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.026260 B = 0.003082 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.019407 B = 9082.338996 C = 9684.983692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.286 3.714 3 H 0.007 0.993 4 C -0.549 4.549 5 H 0.074 0.926 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.975 3.025 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.283 1.283 12 N -0.683 5.683 13 C 0.639 3.361 14 O -0.616 6.616 15 O -0.368 6.368 16 C 0.123 3.877 17 C -0.094 4.094 18 C -0.093 4.093 19 C -0.103 4.103 20 C -0.099 4.099 21 C -0.050 4.050 22 Cl -0.071 7.071 23 C -0.098 4.098 24 H 0.043 0.957 25 H 0.016 0.984 26 H 0.073 0.927 27 H 0.268 0.732 28 H 0.409 0.591 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.457 -8.149 20.989 23.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.184 3.816 3 H 0.025 0.975 4 C -0.588 4.588 5 H 0.092 0.908 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.800 3.200 9 H -0.185 1.185 10 H -0.202 1.202 11 H -0.209 1.209 12 N -0.340 5.340 13 C 0.392 3.608 14 O -0.509 6.509 15 O -0.282 6.282 16 C 0.049 3.951 17 C -0.094 4.094 18 C -0.111 4.111 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.076 4.076 22 Cl -0.042 7.042 23 C -0.117 4.117 24 H 0.062 0.938 25 H 0.035 0.965 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.244 0.756 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.164 0.836 32 H 0.186 0.814 33 H 0.176 0.824 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.408 -7.458 20.965 22.900 hybrid contribution 0.490 -0.132 -0.987 1.110 sum 5.898 -7.590 19.978 22.170 Atomic orbital electron populations 1.21958 0.97731 0.99875 1.00048 1.18492 0.91424 0.91900 0.79740 0.97491 1.21527 1.32954 1.13806 0.90471 0.90779 1.25767 0.94768 0.95571 1.02179 1.70037 1.36744 1.23734 1.24799 0.85245 0.78122 0.78460 0.78192 1.18539 1.20234 1.20860 1.45266 1.67415 1.14516 1.06756 1.18363 0.77029 0.83691 0.81717 1.90920 1.57873 1.16531 1.85574 1.86294 1.79730 1.43662 1.18529 1.21793 1.02558 0.91913 0.78810 1.19428 0.93273 1.00379 0.96341 1.21504 1.00803 0.94508 0.94294 1.21493 0.95079 0.97950 0.97570 1.21478 0.92950 0.98310 0.98992 1.21015 0.85427 1.01908 0.99288 1.98376 1.12680 1.97151 1.95958 1.21064 0.95320 0.98340 0.96965 0.93810 0.96506 0.90866 0.92322 0.75599 0.90627 0.89568 0.83628 0.81399 0.82446 0.84995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.87 9.26 71.98 0.67 -6.21 16 2 C 0.29 14.85 2.56 44.24 0.11 14.97 16 3 H 0.01 0.43 7.58 -2.39 -0.02 0.42 16 4 C -0.55 -28.97 8.73 25.60 0.22 -28.75 16 5 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -51.53 11.32 21.45 0.24 -51.29 16 8 Si 0.98 41.54 29.54 68.60 2.03 43.57 16 9 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 10 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 12 N -0.68 -29.83 5.07 -573.73 -2.91 -32.74 16 13 C 0.64 27.38 8.71 129.79 1.13 28.51 16 14 O -0.62 -30.43 15.80 19.80 0.31 -30.12 16 15 O -0.37 -12.74 10.25 -55.48 -0.57 -13.31 16 16 C 0.12 3.42 5.60 71.24 0.40 3.82 16 17 C -0.09 -2.10 5.52 -19.87 -0.11 -2.20 16 18 C -0.09 -1.62 9.70 22.27 0.22 -1.41 16 19 C -0.10 -1.36 10.05 22.27 0.22 -1.13 16 20 C -0.10 -1.43 9.83 22.29 0.22 -1.21 16 21 C -0.05 -0.94 6.32 22.32 0.14 -0.80 16 22 Cl -0.07 -1.29 28.96 -2.72 -0.08 -1.37 16 23 C -0.10 -2.13 9.49 22.29 0.21 -1.92 16 24 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.07 3.98 6.07 -2.39 -0.01 3.96 16 27 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.41 15.58 8.65 -92.71 -0.80 14.78 16 29 H 0.08 2.13 8.08 -2.39 -0.02 2.11 16 30 H 0.09 2.27 8.08 -2.39 -0.02 2.25 16 31 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 33 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.13 2.87 8.06 -2.92 -0.02 2.84 16 Total: -1.00 -64.60 316.34 3.23 -61.37 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.32 Total: 18.85 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 3.88 Total: 5.04 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -2.67 Total: -84.03 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -0.26 Total: -43.43 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -64.60 3.23 -61.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858925344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.080 kcal (2) G-P(sol) polarization free energy of solvation -64.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds