Wall clock time and date at job start Tue Mar 31 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00008 * 2 1 4 4 H 1.48497 * 109.47187 * 270.00353 * 3 2 1 5 5 H 1.48501 * 109.47090 * 30.00541 * 3 2 1 6 6 H 1.48496 * 109.47136 * 150.00601 * 3 2 1 7 7 C 1.37880 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99684 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00086 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47349 * 180.02562 * 9 7 2 11 11 C 1.38550 * 120.00118 * 179.97438 * 10 9 7 12 12 C 1.39570 * 120.52431 * 0.02562 * 11 10 9 13 13 C 1.38275 * 118.32353 * 180.02562 * 12 11 10 14 14 Cl 1.73599 * 120.41644 * 179.97438 * 13 12 11 15 15 N 1.32686 * 119.16979 * 359.97438 * 13 12 11 16 16 C 1.31759 * 120.98684 * 0.02562 * 15 13 12 17 17 C 1.50706 * 119.07756 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.86580 * 196.00570 * 17 16 15 19 19 C 1.54098 * 109.87782 * 75.00021 * 17 16 15 20 20 C 1.54813 * 104.30472 * 238.47971 * 19 17 16 21 21 C 1.55227 * 101.98357 * 339.26359 * 20 19 17 22 22 O 1.43744 * 109.87636 * 317.16846 * 17 16 15 23 23 N 1.31777 * 121.84847 * 0.25306 * 16 15 13 24 24 H 0.97004 * 120.00171 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47132 * 60.00184 * 9 7 2 26 26 H 1.09001 * 109.47473 * 300.00290 * 9 7 2 27 27 H 0.96992 * 119.99905 * 0.02562 * 10 9 7 28 28 H 1.08003 * 120.83535 * 359.97438 * 12 11 10 29 29 H 1.09002 * 110.48969 * 357.22307 * 19 17 16 30 30 H 1.09002 * 110.48612 * 119.73973 * 19 17 16 31 31 H 1.08999 * 110.90868 * 97.38351 * 20 19 17 32 32 H 1.09003 * 110.91016 * 220.99202 * 20 19 17 33 33 H 1.09002 * 110.51777 * 278.38206 * 21 20 19 34 34 H 1.09000 * 110.77540 * 155.50397 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7411 -4.9189 0.0000 12 6 0.3713 -5.1865 0.0000 13 6 -0.0392 -6.5069 0.0011 14 17 -1.7297 -6.9017 0.0018 15 7 0.8752 -7.4684 0.0016 16 6 2.1611 -7.1816 0.0015 17 6 3.1627 -8.3077 0.0027 18 1 4.1451 -7.9294 0.2852 19 6 3.2309 -8.9497 -1.3965 20 6 2.8665 -10.4347 -1.1542 21 6 3.1599 -10.5954 0.3616 22 8 2.7466 -9.3309 0.9225 23 7 2.5962 -5.9377 0.0060 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 3.1566 -3.4354 -0.0002 28 1 -0.3498 -4.3824 0.0000 29 1 2.5077 -8.4837 -2.0658 30 1 4.2376 -8.8659 -1.8061 31 1 1.8131 -10.6165 -1.3676 32 1 3.5014 -11.0929 -1.7473 33 1 4.2243 -10.7601 0.5293 34 1 2.5750 -11.4123 0.7842 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884488619.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:54 Heat of formation + Delta-G solvation = -7.403039 kcal Electronic energy + Delta-G solvation = -19365.545636 eV Core-core repulsion = 16131.174471 eV Total energy + Delta-G solvation = -3234.371165 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79592 -39.14021 -36.64210 -35.93473 -33.16988 -32.64840 -32.08146 -31.02367 -28.71862 -27.19193 -24.41715 -23.35606 -22.74607 -21.78022 -20.75089 -18.22707 -17.52404 -16.53517 -16.29200 -15.63857 -15.12860 -14.90238 -14.87172 -14.72578 -14.20457 -13.70364 -13.55395 -13.20145 -13.07593 -12.25219 -12.19802 -11.84456 -11.62295 -11.36685 -11.17377 -11.07805 -11.05037 -10.91970 -10.51093 -10.39613 -10.26406 -9.80178 -9.58998 -9.29080 -8.98504 -8.73869 -7.49026 -6.34856 -4.41878 1.17605 1.66962 1.92659 3.16262 3.22854 3.25022 3.40814 3.81743 4.09807 4.22800 4.28997 4.53659 4.78082 4.80636 4.97631 5.03101 5.15250 5.18113 5.32243 5.55342 5.57518 5.63792 5.73602 5.85990 5.89607 5.98867 6.36515 6.78153 6.86060 7.09418 7.13534 7.42107 7.72163 7.86068 8.27834 8.50071 8.69988 9.25392 10.75434 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.022430 B = 0.003938 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.050452 B = 7108.422459 C = 8126.897786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.247 3.753 10 N -0.677 5.677 11 C 0.452 3.548 12 C -0.273 4.273 13 C 0.246 3.754 14 Cl -0.031 7.031 15 N -0.551 5.551 16 C 0.372 3.628 17 C 0.153 3.847 18 H 0.098 0.902 19 C -0.140 4.140 20 C -0.150 4.150 21 C 0.047 3.953 22 O -0.355 6.355 23 N -0.581 5.581 24 H 0.268 0.732 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.404 0.596 28 H 0.155 0.845 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 -16.977 -2.069 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.126 3.874 10 N -0.302 5.302 11 C 0.204 3.796 12 C -0.304 4.304 13 C 0.078 3.922 14 Cl -0.002 7.002 15 N -0.274 5.274 16 C 0.101 3.899 17 C 0.093 3.907 18 H 0.115 0.885 19 C -0.178 4.178 20 C -0.188 4.188 21 C -0.029 4.029 22 O -0.273 6.273 23 N -0.309 5.309 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.240 0.760 28 H 0.173 0.827 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.820 -17.298 -1.847 17.810 hybrid contribution -0.058 1.718 -0.197 1.731 sum 3.761 -15.579 -2.044 16.157 Atomic orbital electron populations 1.69928 1.06112 1.27746 1.48488 1.24918 0.94980 0.99574 0.94283 0.86341 0.79673 0.82178 0.78376 1.20318 1.20865 1.19608 1.21104 0.93543 0.89845 1.53839 0.91549 1.19414 0.88420 0.81946 0.97596 1.45509 1.11372 1.01006 1.72330 1.18550 0.87993 0.86791 0.86226 1.21926 0.96684 0.97022 1.14759 1.21465 0.87606 0.89165 0.93927 1.98389 1.10596 1.95017 1.96217 1.67447 1.01415 1.36622 1.21946 1.22227 0.88151 0.89845 0.89672 1.21205 0.93833 0.85591 0.90069 0.88464 1.22889 1.03011 0.95640 0.96297 1.23146 1.03034 0.95790 0.96786 1.23593 0.99560 0.87172 0.92614 1.88982 1.80557 1.14615 1.43144 1.67630 1.39282 0.99151 1.24835 0.92182 0.95120 0.95116 0.76016 0.82716 0.90287 0.89909 0.90053 0.90200 0.92156 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.55 -13.96 9.28 -34.44 -0.32 -14.28 16 8 H 0.07 1.63 7.60 -52.48 -0.40 1.24 16 9 C 0.25 5.85 4.68 -5.20 -0.02 5.83 16 10 N -0.68 -13.88 5.70 -61.46 -0.35 -14.23 16 11 C 0.45 8.93 7.71 -154.78 -1.19 7.73 16 12 C -0.27 -5.20 9.20 -39.07 -0.36 -5.56 16 13 C 0.25 4.43 7.33 -17.17 -0.13 4.31 16 14 Cl -0.03 -0.47 29.15 -51.86 -1.51 -1.99 16 15 N -0.55 -9.98 10.12 -7.94 -0.08 -10.06 16 16 C 0.37 6.48 6.42 -157.24 -1.01 5.47 16 17 C 0.15 2.12 3.84 -27.31 -0.10 2.02 16 18 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 19 C -0.14 -1.52 6.62 -25.20 -0.17 -1.69 16 20 C -0.15 -1.35 7.17 -24.60 -0.18 -1.52 16 21 C 0.05 0.46 7.72 38.34 0.30 0.75 16 22 O -0.36 -5.09 11.00 -35.23 -0.39 -5.48 16 23 N -0.58 -10.85 10.36 -9.97 -0.10 -10.95 16 24 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.03 0.77 7.97 -51.93 -0.41 0.36 16 26 H 0.03 0.78 7.97 -51.93 -0.41 0.36 16 27 H 0.40 7.85 8.44 -40.82 -0.34 7.50 16 28 H 0.16 2.95 6.86 -52.48 -0.36 2.59 16 29 H 0.08 0.98 7.69 -51.93 -0.40 0.58 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 309.59 15.07 4.67 4.67 Total: -1.00 -28.26 309.59 -9.34 -37.60 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.00 Total: 4.24 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -3.28 Total: 4.71 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.20 Total: -58.79 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.39 Total: -5.48 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.51 Total: -1.99 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.26 -9.34 -37.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884488619.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.197 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds