Wall clock time and date at job start Tue Mar 31 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00008 * 2 1 4 4 H 1.48497 * 109.47187 * 270.00353 * 3 2 1 5 5 H 1.48501 * 109.47090 * 30.00541 * 3 2 1 6 6 H 1.48496 * 109.47136 * 150.00601 * 3 2 1 7 7 C 1.37880 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99684 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00086 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47349 * 180.02562 * 9 7 2 11 11 C 1.38550 * 120.00118 * 179.97438 * 10 9 7 12 12 C 1.39570 * 120.52431 * 0.02562 * 11 10 9 13 13 C 1.38275 * 118.32353 * 180.02562 * 12 11 10 14 14 Cl 1.73599 * 120.41644 * 179.97438 * 13 12 11 15 15 N 1.32686 * 119.16979 * 359.97438 * 13 12 11 16 16 C 1.31759 * 120.98684 * 0.02562 * 15 13 12 17 17 C 1.50706 * 119.07756 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.86580 * 196.00570 * 17 16 15 19 19 C 1.54098 * 109.87782 * 75.00021 * 17 16 15 20 20 C 1.54813 * 104.30472 * 238.47971 * 19 17 16 21 21 C 1.55227 * 101.98357 * 339.26359 * 20 19 17 22 22 O 1.43744 * 109.87636 * 317.16846 * 17 16 15 23 23 N 1.31777 * 121.84847 * 0.25306 * 16 15 13 24 24 H 0.97004 * 120.00171 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47132 * 60.00184 * 9 7 2 26 26 H 1.09001 * 109.47473 * 300.00290 * 9 7 2 27 27 H 0.96992 * 119.99905 * 0.02562 * 10 9 7 28 28 H 1.08003 * 120.83535 * 359.97438 * 12 11 10 29 29 H 1.09002 * 110.48969 * 357.22307 * 19 17 16 30 30 H 1.09002 * 110.48612 * 119.73973 * 19 17 16 31 31 H 1.08999 * 110.90868 * 97.38351 * 20 19 17 32 32 H 1.09003 * 110.91016 * 220.99202 * 20 19 17 33 33 H 1.09002 * 110.51777 * 278.38206 * 21 20 19 34 34 H 1.09000 * 110.77540 * 155.50397 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7411 -4.9189 0.0000 12 6 0.3713 -5.1865 0.0000 13 6 -0.0392 -6.5069 0.0011 14 17 -1.7297 -6.9017 0.0018 15 7 0.8752 -7.4684 0.0016 16 6 2.1611 -7.1816 0.0015 17 6 3.1627 -8.3077 0.0027 18 1 4.1451 -7.9294 0.2852 19 6 3.2309 -8.9497 -1.3965 20 6 2.8665 -10.4347 -1.1542 21 6 3.1599 -10.5954 0.3616 22 8 2.7466 -9.3309 0.9225 23 7 2.5962 -5.9377 0.0060 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 3.1566 -3.4354 -0.0002 28 1 -0.3498 -4.3824 0.0000 29 1 2.5077 -8.4837 -2.0658 30 1 4.2376 -8.8659 -1.8061 31 1 1.8131 -10.6165 -1.3676 32 1 3.5014 -11.0929 -1.7473 33 1 4.2243 -10.7601 0.5293 34 1 2.5750 -11.4123 0.7842 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884488619.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:54 Heat of formation + Delta-G solvation = -25.178445 kcal Electronic energy + Delta-G solvation = -19366.316435 eV Core-core repulsion = 16131.174471 eV Total energy + Delta-G solvation = -3235.141964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.19814 -40.15075 -38.06194 -37.51868 -35.00523 -34.08940 -33.07436 -32.45210 -29.83764 -29.04658 -25.77723 -24.92414 -24.19261 -22.76405 -21.95684 -19.83347 -18.90564 -18.19995 -17.25466 -16.95573 -16.73263 -16.42059 -16.32102 -15.94938 -15.63830 -15.13893 -14.85744 -14.51499 -14.27599 -14.11346 -13.53583 -12.96233 -12.87766 -12.68661 -12.65234 -12.51976 -12.26467 -12.11816 -11.97870 -11.82709 -11.57060 -11.48831 -10.87136 -10.74726 -10.57335 -10.46272 -9.13645 -8.33914 -6.47934 -0.26938 0.16154 0.51991 1.43320 1.43751 1.54767 1.96403 2.37194 2.50209 2.78630 3.02734 3.16237 3.50941 3.63331 3.77251 3.94432 4.02626 4.15621 4.28393 4.42856 4.50440 4.78205 4.81668 4.88747 4.96630 5.04392 5.06816 5.15938 5.23364 5.46883 5.56595 5.77615 5.90287 6.20041 6.52772 6.75146 7.07504 7.24838 8.77284 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.022430 B = 0.003938 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.050452 B = 7108.422459 C = 8126.897786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.561 4.561 8 H 0.074 0.926 9 C 0.266 3.734 10 N -0.679 5.679 11 C 0.443 3.557 12 C -0.288 4.288 13 C 0.246 3.754 14 Cl -0.007 7.007 15 N -0.554 5.554 16 C 0.366 3.634 17 C 0.150 3.850 18 H 0.108 0.892 19 C -0.136 4.136 20 C -0.142 4.142 21 C 0.041 3.959 22 O -0.386 6.386 23 N -0.584 5.584 24 H 0.271 0.729 25 H 0.011 0.989 26 H 0.009 0.991 27 H 0.409 0.591 28 H 0.148 0.852 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.244 -18.125 -2.418 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.800 3.200 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.598 4.598 8 H 0.092 0.908 9 C 0.144 3.856 10 N -0.306 5.306 11 C 0.196 3.804 12 C -0.318 4.318 13 C 0.077 3.923 14 Cl 0.022 6.978 15 N -0.277 5.277 16 C 0.096 3.904 17 C 0.090 3.910 18 H 0.125 0.875 19 C -0.175 4.175 20 C -0.179 4.179 21 C -0.035 4.035 22 O -0.304 6.304 23 N -0.311 5.311 24 H 0.080 0.920 25 H 0.029 0.971 26 H 0.027 0.973 27 H 0.246 0.754 28 H 0.166 0.834 29 H 0.079 0.921 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.287 -18.498 -2.198 19.364 hybrid contribution -0.567 1.905 -0.077 1.989 sum 4.720 -16.593 -2.275 17.400 Atomic orbital electron populations 1.70043 1.07667 1.28721 1.49458 1.25822 0.95778 1.03144 0.93760 0.85275 0.78501 0.77673 0.78550 1.19697 1.20701 1.18705 1.21480 0.94153 0.90678 1.53524 0.90760 1.18944 0.88350 0.82669 0.95618 1.45154 1.10975 1.00785 1.73669 1.18662 0.88513 0.86750 0.86455 1.21918 0.96478 0.97469 1.15965 1.21665 0.88800 0.88885 0.92909 1.98391 1.08637 1.94828 1.95989 1.67607 1.01813 1.36416 1.21907 1.23132 0.88786 0.90414 0.88040 1.21427 0.92766 0.84893 0.91939 0.87460 1.22922 1.04087 0.96421 0.94070 1.23140 1.03059 0.94918 0.96818 1.23889 1.01190 0.85560 0.92829 1.88945 1.81161 1.16277 1.44024 1.67697 1.39039 0.99390 1.24992 0.92016 0.97083 0.97269 0.75440 0.83431 0.92136 0.87274 0.91203 0.87007 0.89837 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.26 13.29 21.45 0.28 -50.97 16 2 C 0.02 0.83 5.46 84.66 0.46 1.29 16 3 Si 0.98 40.88 29.54 68.60 2.03 42.91 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 7 C -0.56 -28.95 9.28 25.60 0.24 -28.72 16 8 H 0.07 3.63 7.60 -2.91 -0.02 3.61 16 9 C 0.27 13.04 4.68 85.63 0.40 13.44 16 10 N -0.68 -28.45 5.70 -348.36 -1.99 -30.44 16 11 C 0.44 17.80 7.71 133.14 1.03 18.82 16 12 C -0.29 -11.25 9.20 22.60 0.21 -11.04 16 13 C 0.25 8.89 7.33 84.57 0.62 9.51 16 14 Cl -0.01 -0.22 29.15 -2.72 -0.08 -0.30 16 15 N -0.55 -19.89 10.12 -179.02 -1.81 -21.70 16 16 C 0.37 12.59 6.42 138.77 0.89 13.49 16 17 C 0.15 3.93 3.84 30.22 0.12 4.05 16 18 H 0.11 2.57 8.13 -2.39 -0.02 2.55 16 19 C -0.14 -2.67 6.62 31.58 0.21 -2.46 16 20 C -0.14 -2.15 7.17 31.98 0.23 -1.92 16 21 C 0.04 0.68 7.72 72.75 0.56 1.24 16 22 O -0.39 -10.45 11.00 -148.98 -1.64 -12.08 16 23 N -0.58 -21.74 10.36 -185.46 -1.92 -23.66 16 24 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 25 H 0.01 0.59 7.97 -2.39 -0.02 0.57 16 26 H 0.01 0.50 7.97 -2.39 -0.02 0.48 16 27 H 0.41 16.05 8.44 -92.71 -0.78 15.26 16 28 H 0.15 5.91 6.86 -2.91 -0.02 5.89 16 29 H 0.06 1.42 7.69 -2.39 -0.02 1.40 16 30 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -60.54 309.59 0.19 -60.35 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.35 Total: 18.20 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 4.96 Total: 17.70 kcal Atomic # 7 Polarization: -121.35 SS G_CDS: -5.43 Total: -126.78 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -1.64 Total: -12.08 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.08 Total: -0.30 kcal Total: -60.54 0.19 -60.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884488619.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.173 kcal (2) G-P(sol) polarization free energy of solvation -60.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds