Wall clock time and date at job start Tue Mar 31 2020 05:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08997 * 109.46854 * 2 1 4 4 C 1.50698 * 109.46677 * 119.99505 * 2 1 3 5 5 H 1.08004 * 119.99767 * 119.99706 * 4 2 1 6 6 C 1.37879 * 120.00254 * 300.00318 * 4 2 1 7 7 N 1.31513 * 120.00132 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99941 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47273 * 59.99960 * 8 6 4 10 10 H 1.48500 * 109.46847 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47131 * 299.99356 * 8 6 4 12 12 C 1.50699 * 109.47382 * 239.99491 * 2 1 3 13 13 O 1.21279 * 119.99917 * 240.00787 * 12 2 1 14 14 N 1.34780 * 119.99521 * 60.00148 * 12 2 1 15 15 C 1.46507 * 119.99446 * 179.97438 * 14 12 2 16 16 C 1.50698 * 109.46816 * 179.97438 * 15 14 12 17 17 C 1.38194 * 120.02592 * 260.00184 * 16 15 14 18 18 C 1.38235 * 120.07558 * 180.02562 * 17 16 15 19 19 C 1.38288 * 120.12271 * 359.97438 * 18 17 16 20 20 C 1.38215 * 120.03826 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 120.03614 * 179.97438 * 20 19 18 22 22 C 1.38673 * 120.01666 * 80.02387 * 16 15 14 23 23 O 1.35920 * 120.05719 * 0.02562 * 22 16 15 24 24 H 1.08997 * 109.46854 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47212 * 300.00712 * 1 2 3 26 26 H 1.09003 * 109.46424 * 60.00300 * 1 2 3 27 27 H 0.96996 * 120.00314 * 180.02562 * 7 6 4 28 28 H 0.96992 * 120.00222 * 0.02562 * 14 12 2 29 29 H 1.09002 * 109.46992 * 60.00455 * 15 14 12 30 30 H 1.08992 * 109.47086 * 300.00215 * 15 14 12 31 31 H 1.08001 * 119.96048 * 0.27471 * 17 16 15 32 32 H 1.08005 * 119.93602 * 180.02562 * 18 17 16 33 33 H 1.07998 * 119.98009 * 179.97438 * 19 18 17 34 34 H 0.96697 * 114.00511 * 269.96907 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3223 -1.1194 4.0081 9 1 3.8073 -1.1188 4.0080 10 1 1.8276 -0.4190 5.2205 11 1 1.8278 -2.5196 4.0084 12 6 2.0325 -0.7105 -1.2304 13 8 2.7296 -1.6966 -1.1190 14 7 1.7069 -0.2500 -2.4545 15 6 2.1958 -0.9405 -3.6506 16 6 1.6929 -0.2306 -4.8811 17 6 0.5986 -0.7243 -5.5656 18 6 0.1367 -0.0742 -6.6948 19 6 0.7676 1.0720 -7.1425 20 6 1.8625 1.5701 -6.4617 21 17 2.6549 3.0086 -7.0243 22 6 2.3283 0.9184 -5.3276 23 8 3.4053 1.4052 -4.6565 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8898 26 1 -0.3632 0.5138 -0.8901 27 1 0.7094 1.1620 3.4843 28 1 1.1496 0.5388 -2.5436 29 1 1.8328 -1.9683 -3.6508 30 1 3.2857 -0.9400 -3.6504 31 1 0.1012 -1.6168 -5.2156 32 1 -0.7190 -0.4618 -7.2277 33 1 0.4051 1.5778 -8.0252 34 1 3.1819 2.0377 -3.9600 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890761156.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:56 Heat of formation + Delta-G solvation = -70.080438 kcal Electronic energy + Delta-G solvation = -19502.896549 eV Core-core repulsion = 16233.514737 eV Total energy + Delta-G solvation = -3269.381812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.31399 -38.64370 -36.90521 -36.70595 -34.43375 -33.73109 -31.44708 -30.29016 -29.88171 -26.13248 -25.12991 -22.90365 -22.60317 -21.54803 -19.44526 -18.59551 -16.88441 -16.48858 -16.28226 -15.88559 -15.52159 -15.04568 -14.46871 -14.36283 -14.28249 -13.50983 -13.14990 -12.80348 -12.78355 -12.45896 -12.30037 -11.83032 -11.65229 -11.45624 -11.28270 -11.00545 -10.75705 -10.70671 -10.65135 -10.26276 -9.96489 -9.23404 -8.99178 -8.87330 -8.56484 -8.49469 -8.31036 -6.03340 -4.06482 0.80486 0.82281 1.88352 3.14297 3.36713 3.39056 3.44841 3.71843 3.89656 4.03888 4.41888 4.48720 4.61652 4.92177 4.96384 5.19528 5.30061 5.40666 5.61385 5.78922 5.85704 5.99995 6.21846 6.26125 6.36840 6.60030 6.80806 6.90613 7.00576 7.40768 7.45984 7.74559 7.97969 8.13011 8.42497 9.02339 9.21597 9.59199 11.04213 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029715 B = 0.003617 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.062797 B = 7740.088682 C = 7988.901729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.502 4.502 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.520 3.480 13 O -0.543 6.543 14 N -0.744 5.744 15 C 0.164 3.836 16 C -0.112 4.112 17 C -0.083 4.083 18 C -0.119 4.119 19 C -0.096 4.096 20 C -0.067 4.067 21 Cl -0.060 7.060 22 C 0.134 3.866 23 O -0.482 6.482 24 H 0.031 0.969 25 H 0.093 0.907 26 H 0.011 0.989 27 H 0.261 0.739 28 H 0.394 0.606 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.165 3.403 -19.749 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.070 0.930 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.419 6.419 14 N -0.398 5.398 15 C 0.040 3.960 16 C -0.114 4.114 17 C -0.101 4.101 18 C -0.137 4.137 19 C -0.115 4.115 20 C -0.094 4.094 21 Cl -0.031 7.031 22 C 0.088 3.912 23 O -0.293 6.293 24 H 0.050 0.950 25 H 0.111 0.889 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.227 0.773 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.311 2.547 -19.913 20.208 hybrid contribution -0.189 0.463 0.913 1.041 sum -2.501 3.010 -19.001 19.399 Atomic orbital electron populations 1.21743 0.96562 0.99809 1.00873 1.18868 0.94106 0.96808 0.89272 0.93025 1.21109 1.31041 1.12854 0.89003 0.90833 1.24943 0.95091 0.95057 0.99099 1.69855 1.37105 1.23059 1.23650 0.86508 0.79315 0.79711 0.81618 1.20176 1.21392 1.20201 1.22012 0.78398 0.84331 0.84264 1.90540 1.37840 1.26884 1.86622 1.46338 1.55611 1.32751 1.05135 1.19972 0.99792 0.95244 0.80995 1.20357 0.96121 0.96413 0.98460 1.21196 0.94637 0.99869 0.94429 1.21132 1.00449 0.95208 0.96950 1.21014 0.94065 0.96553 0.99845 1.21410 0.97422 0.92027 0.98543 1.98374 1.79802 1.36427 1.88502 1.18070 0.88119 0.93188 0.91866 1.84807 1.28310 1.63784 1.52352 0.94997 0.88858 0.97004 0.92913 0.77264 0.91041 0.90366 0.84605 0.84673 0.84622 0.74540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.87 37.16 0.33 -2.63 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 4 C -0.50 -14.12 8.37 -34.44 -0.29 -14.41 16 5 H 0.07 2.19 6.75 -52.48 -0.35 1.84 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -24.94 11.32 55.43 0.63 -24.32 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.52 11.54 7.15 -10.98 -0.08 11.46 16 13 O -0.54 -14.02 15.46 5.56 0.09 -13.93 16 14 N -0.74 -12.28 5.44 -61.47 -0.33 -12.62 16 15 C 0.16 2.38 5.46 -5.19 -0.03 2.35 16 16 C -0.11 -1.32 5.26 -104.48 -0.55 -1.87 16 17 C -0.08 -0.80 9.66 -39.60 -0.38 -1.19 16 18 C -0.12 -0.97 10.04 -39.56 -0.40 -1.37 16 19 C -0.10 -0.84 9.83 -39.57 -0.39 -1.23 16 20 C -0.07 -0.71 6.33 -39.36 -0.25 -0.96 16 21 Cl -0.06 -0.62 28.51 -51.86 -1.48 -2.10 16 22 C 0.13 1.58 6.67 -39.19 -0.26 1.32 16 23 O -0.48 -5.86 12.20 -19.49 -0.24 -6.09 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 26 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.39 5.65 7.88 -40.82 -0.32 5.33 16 29 H 0.07 1.05 8.00 -51.93 -0.42 0.64 16 30 H 0.08 1.26 7.85 -51.93 -0.41 0.85 16 31 H 0.14 1.15 8.04 -52.49 -0.42 0.72 16 32 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 33 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.40 3.69 9.06 45.56 0.41 4.10 16 LS Contribution 311.31 15.07 4.69 4.69 Total: -1.00 -31.82 311.31 -7.34 -39.17 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -3.04 Total: 4.98 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -2.63 Total: -6.50 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.29 Total: -36.93 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.15 Total: -20.03 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.48 Total: -2.10 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.82 -7.34 -39.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890761156.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.913 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds