Wall clock time and date at job start Tue Mar 31 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99749 * 2 1 4 4 H 1.48493 * 109.46856 * 239.99927 * 3 2 1 5 5 H 1.48497 * 109.47266 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46723 * 120.00045 * 3 2 1 7 7 C 1.37870 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99707 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00566 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47627 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47257 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47257 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47627 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99792 * 359.97438 * 13 12 11 15 15 N 1.34768 * 120.00099 * 179.97438 * 13 12 11 16 16 C 1.39593 * 119.99676 * 185.25233 * 15 13 12 17 17 C 1.39410 * 121.08231 * 212.04343 * 16 15 13 18 18 N 1.31766 * 119.75409 * 179.97438 * 17 16 15 19 19 N 1.28304 * 122.27702 * 359.97438 * 18 17 16 20 20 C 1.32125 * 122.36271 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 120.05025 * 179.97438 * 20 19 18 22 22 C 1.38518 * 119.89890 * 0.24979 * 20 19 18 23 23 H 0.97001 * 120.00021 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47287 * 59.99298 * 9 7 2 25 25 H 1.09005 * 109.46739 * 299.99628 * 9 7 2 26 26 H 1.08998 * 109.46991 * 59.99171 * 10 9 7 27 27 H 1.09002 * 109.46837 * 300.00257 * 10 9 7 28 28 H 1.08993 * 109.47350 * 59.99961 * 11 10 9 29 29 H 1.08997 * 109.47113 * 299.99687 * 11 10 9 30 30 H 1.08998 * 109.46991 * 59.99274 * 12 11 10 31 31 H 1.09010 * 109.46646 * 300.00115 * 12 11 10 32 32 H 0.96995 * 120.00302 * 5.25670 * 15 13 12 33 33 H 1.07998 * 120.12484 * 0.02562 * 17 16 15 34 34 H 1.08003 * 121.06091 * 179.72659 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 6 2.4744 -6.1500 -0.0024 13 6 1.7210 -7.4551 -0.0036 14 8 0.5082 -7.4551 -0.0036 15 7 2.3949 -8.6222 -0.0046 16 6 1.7013 -9.8285 -0.1163 17 6 2.1680 -10.9871 0.5027 18 7 1.4921 -12.1116 0.3803 19 7 0.4040 -12.1869 -0.2953 20 6 -0.1163 -11.1434 -0.9167 21 17 -1.5920 -11.3135 -1.8150 22 6 0.5206 -9.9149 -0.8551 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8881 26 1 2.8713 -3.6047 0.8890 27 1 2.8726 -3.6039 -0.8909 28 1 0.8540 -5.0447 -0.8922 29 1 0.8532 -5.0449 0.8877 30 1 3.1011 -6.0925 0.8876 31 1 3.1012 -6.0919 -0.8924 32 1 3.3618 -8.6241 0.0724 33 1 3.0798 -10.9630 1.0810 34 1 0.1143 -9.0507 -1.3596 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891221557.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:07 Heat of formation + Delta-G solvation = -28.290129 kcal Electronic energy + Delta-G solvation = -18512.321686 eV Core-core repulsion = 15277.044789 eV Total energy + Delta-G solvation = -3235.276897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.56909 -40.98637 -38.06030 -37.06540 -36.47946 -34.66065 -33.57899 -32.83288 -31.26494 -27.75316 -26.17049 -25.51057 -23.92884 -21.96637 -21.55402 -19.58457 -19.04161 -18.39936 -17.95704 -17.68238 -16.89856 -16.57318 -16.45378 -16.33740 -15.54717 -15.27476 -14.61716 -14.53218 -13.89605 -13.62131 -13.44190 -13.31252 -12.84979 -12.75926 -12.68184 -12.39286 -12.25827 -12.16942 -12.12783 -11.61487 -11.34968 -11.30473 -11.11871 -10.94647 -10.73576 -10.53492 -10.06239 -8.18202 -6.30099 -0.60194 -0.45240 0.42454 1.34818 1.41250 1.44531 1.52357 1.60040 2.25120 2.42345 2.96082 3.14976 3.16931 3.49025 3.51069 3.77751 3.99300 4.09826 4.16180 4.54125 4.61312 4.67951 4.69945 4.85772 4.88104 5.13197 5.20009 5.34818 5.40840 5.58776 5.80482 5.90199 6.11842 6.26356 6.86805 6.89380 7.34014 7.39878 8.93683 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.034445 B = 0.002514 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.700662 B =11134.721669 C =11823.983832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.101 4.101 12 C -0.123 4.123 13 C 0.517 3.483 14 O -0.552 6.552 15 N -0.645 5.645 16 C 0.177 3.823 17 C 0.038 3.962 18 N -0.225 5.225 19 N -0.277 5.277 20 C 0.130 3.870 21 Cl -0.002 7.002 22 C -0.138 4.138 23 H 0.262 0.738 24 H -0.016 1.016 25 H -0.016 1.016 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.445 0.555 33 H 0.230 0.770 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.490 -22.535 -1.051 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.134 4.134 11 C -0.139 4.139 12 C -0.162 4.162 13 C 0.307 3.693 14 O -0.427 6.427 15 N -0.294 5.294 16 C 0.068 3.932 17 C -0.130 4.130 18 N -0.065 5.065 19 N -0.123 5.123 20 C -0.041 4.041 21 Cl 0.026 6.974 22 C -0.170 4.170 23 H 0.071 0.929 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.288 0.712 33 H 0.246 0.754 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.263 -23.965 -0.776 25.361 hybrid contribution -0.138 2.537 -0.480 2.586 sum 8.125 -21.428 -1.256 22.951 Atomic orbital electron populations 1.70119 1.08062 1.27768 1.51953 1.26069 0.95733 1.03683 0.94885 0.85479 0.78200 0.77886 0.79364 1.18890 1.21320 1.18894 1.21753 0.93798 0.92273 1.50122 0.91465 1.19065 0.94765 0.93861 0.94279 1.21439 0.97768 0.92571 1.01580 1.21296 0.97611 0.93612 1.01383 1.21739 0.98911 0.87517 1.08060 1.21712 0.88049 0.86292 0.73198 1.90775 1.16315 1.87706 1.47913 1.43485 1.12427 1.01860 1.71642 1.18877 0.92875 0.88661 0.92779 1.25002 1.03104 0.87465 0.97470 1.72990 1.00013 1.23789 1.09741 1.72778 1.06397 1.26322 1.06799 1.23394 0.92248 0.91867 0.96556 1.98432 1.29910 1.97979 1.71047 1.22248 0.97002 0.98186 0.99568 0.92915 0.99752 0.99795 0.91827 0.91830 0.93550 0.93645 0.84909 0.84975 0.71171 0.75388 0.82196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.90 13.29 21.44 0.28 -57.61 16 2 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 3 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.54 -30.20 9.11 25.60 0.23 -29.96 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 0.91 4.97 29.85 0.15 1.05 16 10 C -0.10 -3.48 5.15 30.59 0.16 -3.32 16 11 C -0.10 -3.03 4.50 30.59 0.14 -2.90 16 12 C -0.12 -2.02 5.70 29.85 0.17 -1.85 16 13 C 0.52 9.68 7.61 87.66 0.67 10.34 16 14 O -0.55 -16.09 13.69 -3.03 -0.04 -16.14 16 15 N -0.64 -6.77 5.36 -302.86 -1.62 -8.40 16 16 C 0.18 2.72 6.35 38.50 0.24 2.97 16 17 C 0.04 0.49 11.28 84.99 0.96 1.45 16 18 N -0.23 -4.61 11.49 -56.83 -0.65 -5.26 16 19 N -0.28 -6.74 11.48 -49.97 -0.57 -7.32 16 20 C 0.13 2.97 7.36 84.72 0.62 3.60 16 21 Cl 0.00 -0.04 29.13 -2.72 -0.08 -0.12 16 22 C -0.14 -2.91 8.61 22.65 0.19 -2.72 16 23 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 24 H -0.02 -0.92 8.14 -2.39 -0.02 -0.93 16 25 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 26 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 29 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 30 H 0.13 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.45 0.35 8.82 -92.71 -0.82 -0.47 16 33 H 0.23 0.55 8.06 -2.91 -0.02 0.52 16 34 H 0.16 3.74 6.52 -2.91 -0.02 3.72 16 Total: -1.00 -77.62 315.90 3.65 -73.97 By element: Atomic # 1 Polarization: -3.78 SS G_CDS: 0.31 Total: -3.47 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 4.00 Total: -21.25 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -2.56 Total: -78.59 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.04 Total: -16.14 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.08 Total: -0.12 kcal Total: -77.62 3.65 -73.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891221557.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.677 kcal (2) G-P(sol) polarization free energy of solvation -77.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds