Wall clock time and date at job start Tue Mar 31 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 Cl 1.73599 * 120.00094 * 2 1 4 4 C 1.33369 * 119.99790 * 179.97438 * 2 1 3 5 5 C 1.46799 * 120.00015 * 0.02562 * 4 2 1 6 6 O 1.21663 * 119.99962 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00039 * 179.97438 * 5 4 2 8 8 C 1.39362 * 120.00029 * 179.97438 * 7 5 4 9 9 C 1.36155 * 126.26609 * 359.69386 * 8 7 5 10 10 C 1.39725 * 107.86053 * 179.88105 * 9 8 7 11 11 C 1.50701 * 125.77758 * 180.11903 * 10 9 8 12 12 N 1.30825 * 108.44634 * 0.38311 * 10 9 8 13 13 N 1.35815 * 126.26672 * 180.02562 * 8 7 5 14 14 C 1.46492 * 126.08840 * 359.95647 * 13 8 7 15 15 C 1.50697 * 109.47156 * 90.00548 * 14 13 8 16 16 H 1.07997 * 120.00112 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00194 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00055 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00235 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46917 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46777 * 119.99579 * 19 17 15 22 22 H 1.48494 * 109.47376 * 239.99945 * 19 17 15 23 23 H 1.09001 * 109.46953 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47318 * 119.99491 * 1 2 3 25 25 H 1.09000 * 109.47161 * 240.00121 * 1 2 3 26 26 H 1.08001 * 120.00275 * 180.02562 * 4 2 1 27 27 H 0.97000 * 119.99736 * 0.02562 * 7 5 4 28 28 H 1.08006 * 126.06667 * 359.97438 * 9 8 7 29 29 H 1.09005 * 109.46860 * 270.28856 * 11 10 9 30 30 H 1.08996 * 109.47542 * 30.28685 * 11 10 9 31 31 H 1.08999 * 109.47354 * 150.29077 * 11 10 9 32 32 H 1.09010 * 109.47267 * 210.00170 * 14 13 8 33 33 H 1.09001 * 109.47742 * 330.00171 * 14 13 8 34 34 H 0.96997 * 120.00544 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 17 2.3751 1.5034 0.0000 4 6 2.1739 -1.1550 0.0005 5 6 1.4398 -2.4263 0.0005 6 8 0.2232 -2.4263 0.0005 7 7 2.1137 -3.5935 0.0005 8 6 1.4168 -4.8004 0.0011 9 6 0.0634 -4.9490 0.0075 10 6 -0.2175 -6.3177 0.0028 11 6 -1.5923 -6.9350 0.0047 12 7 0.9150 -6.9727 0.0022 13 7 1.9634 -6.0437 0.0016 14 6 3.3944 -6.3572 0.0009 15 6 3.8860 -6.4638 1.4214 16 1 3.2011 -6.3127 2.2426 17 6 5.2102 -6.7543 1.6727 18 7 6.0442 -6.9388 0.6726 19 14 5.8199 -6.8857 3.4335 20 1 4.6923 -6.6374 4.3675 21 1 6.3657 -8.2466 3.6680 22 1 6.8859 -5.8781 3.6648 23 1 -0.3633 1.0277 0.0005 24 1 -0.3634 -0.5137 -0.8900 25 1 -0.3633 -0.5138 0.8900 26 1 3.2539 -1.1551 0.0009 27 1 3.0837 -3.5935 0.0009 28 1 -0.6639 -4.1506 0.0135 29 1 -1.9225 -7.0833 1.0328 30 1 -2.2889 -6.2723 -0.5087 31 1 -1.5598 -7.8960 -0.5087 32 1 3.5585 -7.3048 -0.5124 33 1 3.9395 -5.5661 -0.5139 34 1 6.9757 -7.1435 0.8493 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900327084.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:54 Heat of formation + Delta-G solvation = 28.664482 kcal Electronic energy + Delta-G solvation = -19544.058802 eV Core-core repulsion = 16311.251642 eV Total energy + Delta-G solvation = -3232.807160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.39673 -40.75278 -38.04674 -36.34694 -35.68481 -34.71880 -33.82655 -30.88443 -30.18612 -28.65867 -27.78692 -24.89982 -24.17471 -21.80862 -21.23203 -20.07460 -18.88356 -18.23189 -18.07138 -16.72338 -16.64986 -16.13337 -16.08671 -15.68288 -15.34607 -14.61841 -14.49752 -14.40973 -14.06530 -13.94611 -13.56018 -13.37215 -13.11497 -12.90884 -12.87342 -12.83383 -12.71156 -12.32436 -12.02933 -11.90446 -11.67124 -11.42663 -10.78620 -10.76988 -10.35619 -9.61404 -9.03600 -8.37467 -6.54881 -0.11633 0.72806 1.03571 1.34471 1.37494 1.46236 1.52831 1.85131 2.22463 2.25043 2.37291 2.92995 3.53479 3.78838 3.85041 4.21505 4.35584 4.60448 4.67344 4.72516 4.78396 4.84759 4.87522 4.91660 4.93616 5.02840 5.22762 5.26052 5.28100 5.50480 5.76217 5.98029 6.14549 6.27776 6.56439 6.91927 7.03546 7.17474 8.69197 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.012175 B = 0.005312 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.175533 B = 5269.492863 C = 7126.872147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.034 3.966 3 Cl -0.049 7.049 4 C -0.218 4.218 5 C 0.558 3.442 6 O -0.526 6.526 7 N -0.634 5.634 8 C 0.298 3.702 9 C -0.301 4.301 10 C 0.057 3.943 11 C -0.061 4.061 12 N -0.331 5.331 13 N -0.370 5.370 14 C 0.272 3.728 15 C -0.555 4.555 16 H 0.047 0.953 17 C 0.028 3.972 18 N -0.914 5.914 19 Si 0.969 3.031 20 H -0.276 1.276 21 H -0.275 1.275 22 H -0.265 1.265 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.160 0.840 27 H 0.421 0.579 28 H 0.174 0.826 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.048 0.952 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.858 14.865 -1.758 17.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.005 3.995 3 Cl -0.020 7.020 4 C -0.240 4.240 5 C 0.349 3.651 6 O -0.404 6.404 7 N -0.281 5.281 8 C 0.076 3.924 9 C -0.333 4.333 10 C -0.108 4.108 11 C -0.119 4.119 12 N -0.156 5.156 13 N -0.156 5.156 14 C 0.153 3.847 15 C -0.593 4.593 16 H 0.065 0.935 17 C -0.174 4.174 18 N -0.552 5.552 19 Si 0.793 3.207 20 H -0.201 1.201 21 H -0.201 1.201 22 H -0.190 1.190 23 H 0.106 0.894 24 H 0.110 0.890 25 H 0.107 0.893 26 H 0.178 0.822 27 H 0.259 0.741 28 H 0.191 0.809 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.713 13.843 -1.825 16.458 hybrid contribution 1.276 0.375 0.725 1.515 sum -7.437 14.218 -1.100 16.083 Atomic orbital electron populations 1.21277 0.86888 1.03865 1.04881 1.24191 0.96166 0.86556 0.92605 1.98417 1.76547 1.31296 1.95723 1.22312 1.02009 0.89314 1.10391 1.18405 0.87221 0.83320 0.76144 1.90716 1.13915 1.86980 1.48802 1.42726 1.11214 1.02290 1.71833 1.18420 0.91481 0.80743 1.01801 1.21515 0.92555 0.97198 1.22036 1.22893 0.96075 0.92778 0.99073 1.20228 0.87163 1.00817 1.03685 1.77285 0.94620 1.15620 1.28094 1.49307 1.07567 1.01477 1.57265 1.19212 0.70378 0.97310 0.97760 1.21438 0.94958 1.51251 0.91647 0.93492 1.25678 0.96128 0.93574 1.02020 1.69993 1.05383 1.47017 1.32833 0.85344 0.78204 0.78431 0.78715 1.20114 1.20059 1.18965 0.89358 0.89039 0.89269 0.82222 0.74103 0.80873 0.89727 0.88419 0.90792 0.95535 0.93432 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 8.38 71.24 0.60 -1.46 16 2 C 0.03 0.65 6.57 24.59 0.16 0.81 16 3 Cl -0.05 -0.83 28.94 -2.72 -0.08 -0.91 16 4 C -0.22 -4.82 9.76 23.41 0.23 -4.59 16 5 C 0.56 16.53 7.69 86.48 0.66 17.20 16 6 O -0.53 -16.87 10.20 -4.23 -0.04 -16.91 16 7 N -0.63 -21.88 5.41 -311.69 -1.69 -23.57 16 8 C 0.30 12.54 7.68 131.19 1.01 13.54 16 9 C -0.30 -11.95 9.58 22.14 0.21 -11.74 16 10 C 0.06 2.25 7.20 43.07 0.31 2.56 16 11 C -0.06 -1.65 10.44 71.24 0.74 -0.91 16 12 N -0.33 -15.69 12.56 -47.48 -0.60 -16.29 16 13 N -0.37 -17.79 3.62 -348.33 -1.26 -19.05 16 14 C 0.27 14.09 6.02 85.63 0.52 14.60 16 15 C -0.55 -30.45 9.39 25.60 0.24 -30.21 16 16 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 17 C 0.03 1.47 5.46 84.66 0.46 1.93 16 18 N -0.91 -50.15 13.29 21.45 0.28 -49.87 16 19 Si 0.97 42.23 29.54 68.60 2.03 44.25 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 23 H 0.09 1.19 8.05 -2.39 -0.02 1.17 16 24 H 0.09 1.84 7.22 -2.39 -0.02 1.83 16 25 H 0.09 1.85 7.22 -2.39 -0.02 1.83 16 26 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 27 H 0.42 13.65 7.97 -92.71 -0.74 12.91 16 28 H 0.17 6.40 5.82 -2.91 -0.02 6.38 16 29 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.05 2.37 7.52 -2.39 -0.02 2.35 16 34 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -64.61 313.61 4.19 -60.43 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.40 Total: 20.17 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 5.14 Total: 1.74 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -3.26 Total: -108.77 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.04 Total: -16.91 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -64.61 4.19 -60.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900327084.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.091 kcal (2) G-P(sol) polarization free energy of solvation -64.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds