Wall clock time and date at job start Tue Mar 31 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 Cl 1.73601 * 120.00409 * 2 1 4 4 C 1.33374 * 119.99954 * 179.97438 * 2 1 3 5 5 C 1.46793 * 119.99984 * 179.72178 * 4 2 1 6 6 O 1.21667 * 119.99996 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00025 * 180.02562 * 5 4 2 8 8 C 1.39371 * 120.00193 * 180.02562 * 7 5 4 9 9 C 1.36152 * 126.26179 * 359.68426 * 8 7 5 10 10 C 1.39724 * 107.85592 * 179.88060 * 9 8 7 11 11 C 1.50708 * 125.77634 * 180.13048 * 10 9 8 12 12 N 1.30826 * 108.44602 * 0.39130 * 10 9 8 13 13 N 1.35806 * 126.26203 * 180.02562 * 8 7 5 14 14 C 1.46491 * 126.09696 * 359.97438 * 13 8 7 15 15 C 1.50702 * 109.47420 * 90.00078 * 14 13 8 16 16 H 1.07996 * 119.99525 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99911 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00073 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99713 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47007 * 60.00062 * 19 17 15 21 21 H 1.48500 * 109.47263 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47175 * 300.00098 * 19 17 15 23 23 H 1.09001 * 109.47403 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47044 * 300.00397 * 1 2 3 25 25 H 1.08997 * 109.46876 * 60.00070 * 1 2 3 26 26 H 1.07997 * 120.00210 * 0.02562 * 4 2 1 27 27 H 0.97004 * 120.00041 * 359.97438 * 7 5 4 28 28 H 1.08003 * 126.06630 * 0.02562 * 9 8 7 29 29 H 1.08999 * 109.47069 * 270.27837 * 11 10 9 30 30 H 1.08996 * 109.46967 * 30.28369 * 11 10 9 31 31 H 1.08997 * 109.46972 * 150.28198 * 11 10 9 32 32 H 1.09008 * 109.47215 * 210.00226 * 14 13 8 33 33 H 1.09005 * 109.47198 * 329.99516 * 14 13 8 34 34 H 0.97010 * 119.99332 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 17 2.3751 1.5034 0.0000 4 6 2.1738 -1.1551 0.0005 5 6 3.6417 -1.1551 -0.0057 6 8 4.2501 -0.1014 -0.0108 7 7 4.3156 -2.3223 -0.0057 8 6 5.7093 -2.3223 -0.0110 9 6 6.5146 -1.2246 -0.0225 10 6 7.8404 -1.6657 -0.0214 11 6 9.0624 -0.7838 -0.0291 12 7 7.8413 -2.9740 -0.0182 13 7 6.5125 -3.4174 -0.0121 14 6 6.0685 -4.8134 -0.0074 15 6 5.9103 -5.2950 -1.4266 16 1 6.1192 -4.6278 -2.2497 17 6 5.4979 -6.5872 -1.6741 18 7 5.2421 -7.3992 -0.6718 19 14 5.3012 -7.1839 -3.4333 20 1 6.6036 -7.0815 -4.1393 21 1 4.8500 -8.5987 -3.4286 22 1 4.2929 -6.3457 -4.1305 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6338 -2.0904 0.0005 27 1 3.8306 -3.1623 -0.0012 28 1 6.1868 -0.1955 -0.0288 29 1 9.3527 -0.5742 -1.0586 30 1 8.8385 0.1518 0.4831 31 1 9.8800 -1.2915 0.4826 32 1 6.8087 -5.4284 0.5046 33 1 5.1124 -4.8889 0.5106 34 1 4.9523 -8.3085 -0.8460 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900327085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:57 Heat of formation + Delta-G solvation = 53.794657 kcal Electronic energy + Delta-G solvation = -19550.844737 eV Core-core repulsion = 16319.127303 eV Total energy + Delta-G solvation = -3231.717434 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76405 -39.18712 -36.80942 -34.65576 -34.06992 -33.72190 -32.02705 -29.42450 -28.81856 -27.54344 -25.99906 -23.14178 -22.40109 -20.21965 -19.57092 -19.17536 -17.21470 -16.80550 -16.39280 -15.32473 -15.14057 -14.59606 -14.26065 -14.21544 -14.01881 -13.70595 -13.00939 -12.75873 -12.68510 -12.47391 -12.45247 -12.05111 -11.77207 -11.71566 -11.56238 -11.11985 -11.04203 -10.84938 -10.34947 -10.28810 -9.81826 -9.75257 -9.33227 -9.19403 -8.71464 -7.86380 -7.37867 -6.32898 -4.41296 0.94391 2.06011 2.62226 2.89440 3.18100 3.22648 3.26859 3.35616 3.73051 3.82444 4.24592 4.41611 4.92920 4.96820 5.00372 5.13597 5.39829 5.42002 5.60563 5.67288 5.82723 6.06739 6.19253 6.23172 6.34225 6.47448 6.72276 6.86181 7.06636 7.55914 7.60357 7.67448 7.80983 7.95873 8.36563 8.63932 8.73625 9.26185 10.74117 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.005356 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.088600 B = 5226.491829 C = 6805.015388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.001 4.001 3 Cl -0.039 7.039 4 C -0.202 4.202 5 C 0.543 3.457 6 O -0.498 6.498 7 N -0.634 5.634 8 C 0.302 3.698 9 C -0.292 4.292 10 C 0.049 3.951 11 C -0.062 4.062 12 N -0.285 5.285 13 N -0.347 5.347 14 C 0.258 3.742 15 C -0.540 4.540 16 H 0.064 0.936 17 C 0.067 3.933 18 N -0.891 5.891 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.275 1.275 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.151 0.849 27 H 0.416 0.584 28 H 0.162 0.838 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 13.001 2.437 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.030 4.030 3 Cl -0.010 7.010 4 C -0.224 4.224 5 C 0.331 3.669 6 O -0.373 6.373 7 N -0.281 5.281 8 C 0.080 3.920 9 C -0.324 4.324 10 C -0.116 4.116 11 C -0.120 4.120 12 N -0.110 5.110 13 N -0.133 5.133 14 C 0.140 3.860 15 C -0.579 4.579 16 H 0.082 0.918 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.733 3.267 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.200 1.200 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.169 0.831 27 H 0.252 0.748 28 H 0.180 0.820 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.447 12.491 2.493 15.284 hybrid contribution -0.949 -0.472 -0.983 1.445 sum -9.396 12.019 1.510 15.330 Atomic orbital electron populations 1.21128 0.88042 1.04557 1.04044 1.24157 0.95233 0.87892 0.95705 1.98438 1.76080 1.31101 1.95374 1.22554 0.93545 0.98425 1.07906 1.18217 0.87820 0.83157 0.77691 1.90837 1.69267 1.30199 1.46952 1.42648 1.03418 1.10285 1.71725 1.18022 0.81842 0.89431 1.02730 1.21280 0.90635 0.98868 1.21624 1.22014 0.95517 0.92056 1.02009 1.20014 0.93006 0.96928 1.02100 1.77319 0.96536 1.11532 1.25653 1.49482 1.01895 1.06614 1.55350 1.19596 0.95838 0.71756 0.98818 1.21316 1.47238 0.97896 0.91405 0.91779 1.24930 0.94575 0.96018 0.98136 1.69914 1.44829 1.07077 1.31018 0.86413 0.78924 0.77668 0.83691 1.19855 1.20897 1.20009 0.89576 0.89650 0.89614 0.83121 0.74787 0.82048 0.91368 0.91189 0.91607 0.92602 0.93854 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.21 36.00 0.37 -0.40 16 2 C 0.00 -0.01 6.56 -36.01 -0.24 -0.25 16 3 Cl -0.04 -0.50 25.80 -51.86 -1.34 -1.84 16 4 C -0.20 -2.36 9.64 -37.82 -0.36 -2.72 16 5 C 0.54 8.77 7.70 -12.80 -0.10 8.67 16 6 O -0.50 -9.10 10.83 5.22 0.06 -9.04 16 7 N -0.63 -11.31 5.41 -12.50 -0.07 -11.37 16 8 C 0.30 6.50 7.68 -152.75 -1.17 5.33 16 9 C -0.29 -6.13 9.58 -39.78 -0.38 -6.51 16 10 C 0.05 1.01 7.20 -82.46 -0.59 0.42 16 11 C -0.06 -0.95 10.44 36.01 0.38 -0.57 16 12 N -0.29 -6.78 12.56 33.64 0.42 -6.35 16 13 N -0.35 -8.28 3.62 -61.45 -0.22 -8.51 16 14 C 0.26 6.50 6.02 -5.20 -0.03 6.47 16 15 C -0.54 -14.60 9.39 -34.44 -0.32 -14.92 16 16 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -24.35 13.29 55.43 0.74 -23.61 16 19 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H 0.09 0.43 7.81 -51.93 -0.41 0.02 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.15 1.30 7.87 -52.49 -0.41 0.88 16 27 H 0.42 6.77 7.97 -40.82 -0.33 6.44 16 28 H 0.16 3.30 5.82 -52.48 -0.31 2.99 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.52 8.14 -51.92 -0.42 1.09 16 33 H 0.04 1.05 7.52 -51.93 -0.39 0.66 16 34 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 314.23 15.07 4.74 4.74 Total: -1.00 -31.80 314.23 -7.18 -38.97 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -3.92 Total: 4.13 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.56 Total: -2.82 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.87 Total: -49.84 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.06 Total: -9.04 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.34 Total: -1.84 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.80 -7.18 -38.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900327085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.769 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds