Wall clock time and date at job start Tue Mar 31 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 Cl 1.73601 * 120.00409 * 2 1 4 4 C 1.33374 * 119.99954 * 179.97438 * 2 1 3 5 5 C 1.46793 * 119.99984 * 179.72178 * 4 2 1 6 6 O 1.21667 * 119.99996 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00025 * 180.02562 * 5 4 2 8 8 C 1.39371 * 120.00193 * 180.02562 * 7 5 4 9 9 C 1.36152 * 126.26179 * 359.68426 * 8 7 5 10 10 C 1.39724 * 107.85592 * 179.88060 * 9 8 7 11 11 C 1.50708 * 125.77634 * 180.13048 * 10 9 8 12 12 N 1.30826 * 108.44602 * 0.39130 * 10 9 8 13 13 N 1.35806 * 126.26203 * 180.02562 * 8 7 5 14 14 C 1.46491 * 126.09696 * 359.97438 * 13 8 7 15 15 C 1.50702 * 109.47420 * 90.00078 * 14 13 8 16 16 H 1.07996 * 119.99525 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99911 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00073 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99713 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47007 * 60.00062 * 19 17 15 21 21 H 1.48500 * 109.47263 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47175 * 300.00098 * 19 17 15 23 23 H 1.09001 * 109.47403 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47044 * 300.00397 * 1 2 3 25 25 H 1.08997 * 109.46876 * 60.00070 * 1 2 3 26 26 H 1.07997 * 120.00210 * 0.02562 * 4 2 1 27 27 H 0.97004 * 120.00041 * 359.97438 * 7 5 4 28 28 H 1.08003 * 126.06630 * 0.02562 * 9 8 7 29 29 H 1.08999 * 109.47069 * 270.27837 * 11 10 9 30 30 H 1.08996 * 109.46967 * 30.28369 * 11 10 9 31 31 H 1.08997 * 109.46972 * 150.28198 * 11 10 9 32 32 H 1.09008 * 109.47215 * 210.00226 * 14 13 8 33 33 H 1.09005 * 109.47198 * 329.99516 * 14 13 8 34 34 H 0.97010 * 119.99332 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 17 2.3751 1.5034 0.0000 4 6 2.1738 -1.1551 0.0005 5 6 3.6417 -1.1551 -0.0057 6 8 4.2501 -0.1014 -0.0108 7 7 4.3156 -2.3223 -0.0057 8 6 5.7093 -2.3223 -0.0110 9 6 6.5146 -1.2246 -0.0225 10 6 7.8404 -1.6657 -0.0214 11 6 9.0624 -0.7838 -0.0291 12 7 7.8413 -2.9740 -0.0182 13 7 6.5125 -3.4174 -0.0121 14 6 6.0685 -4.8134 -0.0074 15 6 5.9103 -5.2950 -1.4266 16 1 6.1192 -4.6278 -2.2497 17 6 5.4979 -6.5872 -1.6741 18 7 5.2421 -7.3992 -0.6718 19 14 5.3012 -7.1839 -3.4333 20 1 6.6036 -7.0815 -4.1393 21 1 4.8500 -8.5987 -3.4286 22 1 4.2929 -6.3457 -4.1305 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6338 -2.0904 0.0005 27 1 3.8306 -3.1623 -0.0012 28 1 6.1868 -0.1955 -0.0288 29 1 9.3527 -0.5742 -1.0586 30 1 8.8385 0.1518 0.4831 31 1 9.8800 -1.2915 0.4826 32 1 6.8087 -5.4284 0.5046 33 1 5.1124 -4.8889 0.5106 34 1 4.9523 -8.3085 -0.8460 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900327085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:57 Heat of formation + Delta-G solvation = 34.130747 kcal Electronic energy + Delta-G solvation = -19551.697428 eV Core-core repulsion = 16319.127303 eV Total energy + Delta-G solvation = -3232.570125 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.35051 -40.56299 -37.76297 -36.21406 -35.56437 -34.91705 -33.80853 -30.90781 -30.23199 -28.69135 -27.79365 -24.84798 -23.82429 -21.53078 -21.09601 -20.37276 -18.88539 -18.52679 -17.94625 -16.81467 -16.60352 -16.26912 -15.60923 -15.55531 -15.11148 -14.58931 -14.55264 -14.42079 -14.03696 -13.73191 -13.57991 -13.37580 -13.12716 -12.99623 -12.89720 -12.70730 -12.59025 -12.29365 -12.08555 -11.89950 -11.67393 -11.37327 -10.76349 -10.47532 -10.24506 -9.60739 -9.01797 -8.36417 -6.54064 -0.04245 1.05481 1.17703 1.36551 1.38668 1.41392 1.48900 1.87316 2.23320 2.29537 2.37370 2.93816 3.46068 3.83825 4.07992 4.23377 4.37212 4.61947 4.66686 4.70695 4.79082 4.84714 4.88963 4.92193 4.94634 5.01193 5.19428 5.22851 5.28737 5.50718 5.76970 5.97715 6.17378 6.32463 6.57315 6.99732 7.05762 7.18110 8.69832 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.005356 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.088600 B = 5226.491829 C = 6805.015388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.018 3.982 3 Cl -0.064 7.064 4 C -0.219 4.219 5 C 0.538 3.462 6 O -0.523 6.523 7 N -0.635 5.635 8 C 0.300 3.700 9 C -0.305 4.305 10 C 0.056 3.944 11 C -0.060 4.060 12 N -0.331 5.331 13 N -0.370 5.370 14 C 0.273 3.727 15 C -0.557 4.557 16 H 0.046 0.954 17 C 0.029 3.971 18 N -0.914 5.914 19 Si 0.968 3.032 20 H -0.279 1.279 21 H -0.271 1.271 22 H -0.265 1.265 23 H 0.108 0.892 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.185 0.815 27 H 0.421 0.579 28 H 0.168 0.832 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.026 0.974 33 H 0.049 0.951 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.256 13.627 1.739 17.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.011 4.011 3 Cl -0.035 7.035 4 C -0.241 4.241 5 C 0.329 3.671 6 O -0.399 6.399 7 N -0.283 5.283 8 C 0.078 3.922 9 C -0.337 4.337 10 C -0.109 4.109 11 C -0.118 4.118 12 N -0.156 5.156 13 N -0.156 5.156 14 C 0.155 3.845 15 C -0.595 4.595 16 H 0.064 0.936 17 C -0.173 4.173 18 N -0.551 5.551 19 Si 0.792 3.208 20 H -0.205 1.205 21 H -0.195 1.195 22 H -0.190 1.190 23 H 0.126 0.874 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.202 0.798 27 H 0.258 0.742 28 H 0.185 0.815 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.217 13.129 1.805 16.734 hybrid contribution -0.446 -0.552 -0.723 1.013 sum -10.663 12.578 1.083 16.525 Atomic orbital electron populations 1.21304 0.84458 1.06472 1.05324 1.24824 0.97155 0.86301 0.92823 1.98443 1.77050 1.32739 1.95285 1.22630 0.90640 1.00421 1.10381 1.19054 0.89575 0.82111 0.76372 1.90811 1.70238 1.30794 1.48045 1.42860 1.01979 1.11377 1.72043 1.18428 0.83492 0.88874 1.01408 1.21478 0.90926 0.98926 1.22372 1.22871 0.97264 0.91571 0.99178 1.20214 0.91034 0.96953 1.03638 1.77266 0.96932 1.13243 1.28191 1.49305 1.02569 1.06425 1.57318 1.19207 0.94974 0.72589 0.97766 1.21374 1.48181 0.98318 0.91618 0.93589 1.25671 0.93806 0.95793 1.02034 1.69987 1.44808 1.07484 1.32851 0.85453 0.78669 0.77799 0.78847 1.20458 1.19530 1.18960 0.87382 0.88094 0.88246 0.79832 0.74156 0.81464 0.89757 0.88692 0.90653 0.95608 0.93371 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.21 71.23 0.73 -0.35 16 2 C 0.02 0.33 6.56 24.58 0.16 0.49 16 3 Cl -0.06 -1.56 25.80 -2.72 -0.07 -1.63 16 4 C -0.22 -4.68 9.64 23.41 0.23 -4.45 16 5 C 0.54 17.09 7.70 86.48 0.67 17.75 16 6 O -0.52 -19.01 10.83 -4.24 -0.05 -19.05 16 7 N -0.63 -22.75 5.41 -311.70 -1.69 -24.43 16 8 C 0.30 13.17 7.68 131.19 1.01 14.18 16 9 C -0.31 -12.89 9.58 22.14 0.21 -12.68 16 10 C 0.06 2.34 7.20 43.07 0.31 2.65 16 11 C -0.06 -1.75 10.44 71.24 0.74 -1.01 16 12 N -0.33 -16.15 12.56 -47.47 -0.60 -16.75 16 13 N -0.37 -18.21 3.62 -348.33 -1.26 -19.47 16 14 C 0.27 14.30 6.02 85.64 0.52 14.81 16 15 C -0.56 -30.74 9.39 25.60 0.24 -30.50 16 16 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 17 C 0.03 1.53 5.46 84.65 0.46 1.99 16 18 N -0.91 -50.03 13.29 21.45 0.28 -49.75 16 19 Si 0.97 42.11 29.54 68.60 2.03 44.14 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 23 H 0.11 0.58 7.81 -2.39 -0.02 0.56 16 24 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.18 2.61 7.87 -2.91 -0.02 2.59 16 27 H 0.42 13.77 7.97 -92.71 -0.74 13.03 16 28 H 0.17 6.84 5.82 -2.91 -0.02 6.82 16 29 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.05 2.42 7.52 -2.38 -0.02 2.40 16 34 H 0.27 14.07 8.31 -92.70 -0.77 13.30 16 Total: -1.00 -70.12 314.23 4.32 -65.80 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.40 Total: 18.27 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 5.27 Total: 2.88 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -3.26 Total: -110.40 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.05 Total: -19.05 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.07 Total: -1.63 kcal Total: -70.12 4.32 -65.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900327085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.928 kcal (2) G-P(sol) polarization free energy of solvation -70.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds