Wall clock time and date at job start Tue Mar 31 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38125 * 119.97138 * 2 1 4 4 C 1.38870 * 119.94358 * 180.02562 * 3 2 1 5 5 N 1.39736 * 120.06487 * 179.97438 * 4 3 2 6 6 N 1.40107 * 119.99942 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99723 * 179.97438 * 6 5 4 8 8 O 1.21589 * 119.99537 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00016 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99543 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.46953 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00283 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00366 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00446 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99709 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46690 * 90.00213 * 15 13 11 17 17 H 1.48496 * 109.47085 * 209.99823 * 15 13 11 18 18 H 1.48499 * 109.47178 * 330.00597 * 15 13 11 19 19 C 1.38919 * 119.87533 * 359.97438 * 4 3 2 20 20 C 1.38093 * 119.93651 * 359.97438 * 19 4 3 21 21 C 1.38365 * 119.96836 * 179.97438 * 2 1 3 22 22 Cl 1.73594 * 119.93917 * 359.72244 * 21 2 1 23 23 H 1.08999 * 109.46932 * 270.01743 * 1 2 3 24 24 H 1.08992 * 109.47391 * 30.02073 * 1 2 3 25 25 H 1.09006 * 109.46827 * 150.02029 * 1 2 3 26 26 H 1.08001 * 120.02983 * 359.97438 * 3 2 1 27 27 H 0.97002 * 120.00513 * 359.97438 * 5 4 3 28 28 H 0.96992 * 120.00121 * 0.02562 * 6 5 4 29 29 H 0.97000 * 120.00271 * 0.02562 * 9 7 6 30 30 H 1.08998 * 109.47537 * 299.99784 * 10 9 7 31 31 H 1.08998 * 109.47530 * 60.00059 * 10 9 7 32 32 H 0.96999 * 120.00087 * 179.97438 * 14 13 11 33 33 H 1.07996 * 120.03504 * 180.02562 * 19 4 3 34 34 H 1.07996 * 119.96549 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1965 0.0000 4 6 3.5857 1.1959 -0.0005 5 7 4.2864 2.4049 -0.0011 6 7 5.6874 2.4026 -0.0011 7 6 6.3632 3.5688 -0.0021 8 8 7.5791 3.5668 -0.0026 9 7 5.6911 4.7370 -0.0026 10 6 6.4257 6.0045 -0.0032 11 6 5.4483 7.1516 -0.0044 12 1 4.3861 6.9560 -0.0042 13 6 5.9099 8.4508 -0.0045 14 7 5.0570 9.4518 -0.0050 15 14 7.7471 8.7891 -0.0026 16 1 8.2354 8.8781 -1.4022 17 1 8.0134 10.0716 0.6970 18 1 8.4527 7.6867 0.6987 19 6 4.2771 -0.0091 -0.0005 20 6 3.5821 -1.2024 0.0005 21 6 2.1982 -1.1987 0.0005 22 17 1.3278 -2.7006 0.0085 23 1 -0.3633 0.0003 1.0277 24 1 -0.3634 0.8897 -0.5141 25 1 -0.3633 -0.8902 -0.5136 26 1 1.6570 2.1319 -0.0004 27 1 3.8028 3.2458 -0.0015 28 1 6.1710 1.5619 -0.0011 29 1 4.7211 4.7386 -0.0019 30 1 7.0525 6.0617 0.8867 31 1 7.0525 6.0609 -0.8932 32 1 5.3818 10.3658 -0.0048 33 1 5.3571 -0.0126 -0.0005 34 1 4.1192 -2.1393 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922228649.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:35 Heat of formation + Delta-G solvation = 25.966259 kcal Electronic energy + Delta-G solvation = -18873.272781 eV Core-core repulsion = 15640.348618 eV Total energy + Delta-G solvation = -3232.924164 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.24052 -39.30640 -36.91264 -35.92538 -34.51080 -32.93787 -32.40072 -31.83571 -28.26590 -27.74657 -27.13399 -23.17093 -22.41134 -21.62802 -20.32631 -18.98462 -18.11515 -16.76443 -16.69909 -15.96067 -15.48264 -15.28919 -14.75703 -14.43157 -14.36857 -14.14244 -13.39824 -13.28797 -13.21794 -12.68120 -12.57026 -12.43425 -12.26410 -12.16497 -11.62407 -11.10061 -11.05448 -10.84517 -10.82257 -10.10939 -9.94972 -9.57691 -9.31078 -9.03982 -8.86632 -8.35248 -7.31798 -6.28556 -4.31850 1.05815 1.13892 1.94840 2.11546 3.22267 3.29083 3.36892 3.38441 3.54919 3.55203 4.27385 4.45739 4.54475 4.80895 4.96789 5.06952 5.08111 5.37201 5.38461 5.40668 5.56762 5.84987 5.88745 6.01644 6.18159 6.28403 6.55294 6.65179 6.97502 6.99312 7.21930 7.35846 7.52550 8.18325 8.49501 8.68503 8.86430 9.30604 10.83140 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.034805 B = 0.003005 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.288111 B = 9317.013464 C =10100.851999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.020 4.020 3 C -0.184 4.184 4 C 0.236 3.764 5 N -0.539 5.539 6 N -0.544 5.544 7 C 0.703 3.297 8 O -0.585 6.585 9 N -0.717 5.717 10 C 0.236 3.764 11 C -0.547 4.547 12 H 0.079 0.921 13 C 0.079 3.921 14 N -0.890 5.890 15 Si 0.877 3.123 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.260 1.260 19 C -0.195 4.195 20 C -0.051 4.051 21 C -0.099 4.099 22 Cl -0.081 7.081 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.135 0.865 27 H 0.427 0.573 28 H 0.427 0.573 29 H 0.388 0.612 30 H 0.027 0.973 31 H 0.022 0.978 32 H 0.269 0.731 33 H 0.127 0.873 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 -21.116 0.061 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.021 4.021 3 C -0.208 4.208 4 C 0.130 3.870 5 N -0.267 5.267 6 N -0.300 5.300 7 C 0.402 3.598 8 O -0.460 6.460 9 N -0.371 5.371 10 C 0.113 3.887 11 C -0.584 4.584 12 H 0.097 0.903 13 C -0.125 4.125 14 N -0.527 5.527 15 Si 0.703 3.297 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.184 1.184 19 C -0.219 4.219 20 C -0.070 4.070 21 C -0.128 4.128 22 Cl -0.053 7.053 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.153 0.847 27 H 0.271 0.729 28 H 0.271 0.729 29 H 0.222 0.778 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.504 -20.748 0.064 22.063 hybrid contribution 0.389 0.209 -0.013 0.441 sum -7.115 -20.539 0.050 21.737 Atomic orbital electron populations 1.20902 0.90252 1.03560 1.03063 1.19404 0.96331 0.90569 0.95830 1.20260 0.91027 0.98269 1.11248 1.17748 0.90785 0.84924 0.93540 1.43472 0.94221 1.06594 1.82422 1.44668 0.93461 1.08946 1.82896 1.15917 0.85121 0.79987 0.78733 1.90977 1.10651 1.84561 1.59800 1.45456 1.09586 1.05221 1.76812 1.19464 0.92947 0.79221 0.97023 1.21031 0.94265 0.89312 1.53839 0.90307 1.24772 0.98276 0.95725 0.93725 1.69870 1.34541 0.99252 1.49057 0.86808 0.85298 0.78417 0.79132 1.19771 1.20830 1.18422 1.20365 0.99708 0.90468 1.11364 1.20704 0.91776 0.98217 0.96301 1.20449 0.92062 0.86309 1.13992 1.98328 1.76909 1.32643 1.97392 0.90456 0.90892 0.90730 0.84674 0.72926 0.72859 0.77774 0.95522 0.95974 0.92139 0.85568 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.61 36.01 0.35 -0.55 16 2 C -0.02 -0.19 5.88 -104.62 -0.62 -0.80 16 3 C -0.18 -1.77 9.55 -39.39 -0.38 -2.15 16 4 C 0.24 2.51 6.72 -83.77 -0.56 1.95 16 5 N -0.54 -6.31 6.45 32.42 0.21 -6.10 16 6 N -0.54 -7.56 6.22 27.64 0.17 -7.39 16 7 C 0.70 13.16 8.68 -86.92 -0.75 12.40 16 8 O -0.58 -13.13 17.18 5.29 0.09 -13.03 16 9 N -0.72 -13.99 5.51 -66.41 -0.37 -14.36 16 10 C 0.24 5.62 4.50 -5.19 -0.02 5.60 16 11 C -0.55 -14.51 9.83 -34.44 -0.34 -14.85 16 12 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 13 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 14 N -0.89 -25.82 13.96 55.43 0.77 -25.04 16 15 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 19 C -0.20 -1.96 9.48 -39.38 -0.37 -2.33 16 20 C -0.05 -0.48 9.82 -39.57 -0.39 -0.87 16 21 C -0.10 -0.98 6.31 -39.48 -0.25 -1.23 16 22 Cl -0.08 -0.74 27.28 -51.86 -1.41 -2.16 16 23 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 25 H 0.07 0.54 6.90 -51.93 -0.36 0.19 16 26 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 27 H 0.43 4.70 6.71 -182.59 -1.23 3.47 16 28 H 0.43 5.16 6.70 -182.60 -1.22 3.94 16 29 H 0.39 6.56 6.24 -40.82 -0.25 6.30 16 30 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 31 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.13 1.12 6.20 -52.49 -0.33 0.79 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -31.28 306.69 -9.44 -40.72 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.42 Total: 7.22 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -3.43 Total: -0.73 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.79 Total: -52.89 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.41 Total: -2.16 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.28 -9.44 -40.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922228649.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.683 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds