Wall clock time and date at job start Tue Mar 31 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38125 * 119.97138 * 2 1 4 4 C 1.38870 * 119.94358 * 180.02562 * 3 2 1 5 5 N 1.39736 * 120.06487 * 179.97438 * 4 3 2 6 6 N 1.40107 * 119.99942 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99723 * 179.97438 * 6 5 4 8 8 O 1.21589 * 119.99537 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00016 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99543 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.46953 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00283 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00366 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00446 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99709 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46690 * 90.00213 * 15 13 11 17 17 H 1.48496 * 109.47085 * 209.99823 * 15 13 11 18 18 H 1.48499 * 109.47178 * 330.00597 * 15 13 11 19 19 C 1.38919 * 119.87533 * 359.97438 * 4 3 2 20 20 C 1.38093 * 119.93651 * 359.97438 * 19 4 3 21 21 C 1.38365 * 119.96836 * 179.97438 * 2 1 3 22 22 Cl 1.73594 * 119.93917 * 359.72244 * 21 2 1 23 23 H 1.08999 * 109.46932 * 270.01743 * 1 2 3 24 24 H 1.08992 * 109.47391 * 30.02073 * 1 2 3 25 25 H 1.09006 * 109.46827 * 150.02029 * 1 2 3 26 26 H 1.08001 * 120.02983 * 359.97438 * 3 2 1 27 27 H 0.97002 * 120.00513 * 359.97438 * 5 4 3 28 28 H 0.96992 * 120.00121 * 0.02562 * 6 5 4 29 29 H 0.97000 * 120.00271 * 0.02562 * 9 7 6 30 30 H 1.08998 * 109.47537 * 299.99784 * 10 9 7 31 31 H 1.08998 * 109.47530 * 60.00059 * 10 9 7 32 32 H 0.96999 * 120.00087 * 179.97438 * 14 13 11 33 33 H 1.07996 * 120.03504 * 180.02562 * 19 4 3 34 34 H 1.07996 * 119.96549 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1965 0.0000 4 6 3.5857 1.1959 -0.0005 5 7 4.2864 2.4049 -0.0011 6 7 5.6874 2.4026 -0.0011 7 6 6.3632 3.5688 -0.0021 8 8 7.5791 3.5668 -0.0026 9 7 5.6911 4.7370 -0.0026 10 6 6.4257 6.0045 -0.0032 11 6 5.4483 7.1516 -0.0044 12 1 4.3861 6.9560 -0.0042 13 6 5.9099 8.4508 -0.0045 14 7 5.0570 9.4518 -0.0050 15 14 7.7471 8.7891 -0.0026 16 1 8.2354 8.8781 -1.4022 17 1 8.0134 10.0716 0.6970 18 1 8.4527 7.6867 0.6987 19 6 4.2771 -0.0091 -0.0005 20 6 3.5821 -1.2024 0.0005 21 6 2.1982 -1.1987 0.0005 22 17 1.3278 -2.7006 0.0085 23 1 -0.3633 0.0003 1.0277 24 1 -0.3634 0.8897 -0.5141 25 1 -0.3633 -0.8902 -0.5136 26 1 1.6570 2.1319 -0.0004 27 1 3.8028 3.2458 -0.0015 28 1 6.1710 1.5619 -0.0011 29 1 4.7211 4.7386 -0.0019 30 1 7.0525 6.0617 0.8867 31 1 7.0525 6.0609 -0.8932 32 1 5.3818 10.3658 -0.0048 33 1 5.3571 -0.0126 -0.0005 34 1 4.1192 -2.1393 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922228649.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:34 Heat of formation + Delta-G solvation = 5.246980 kcal Electronic energy + Delta-G solvation = -18874.171237 eV Core-core repulsion = 15640.348618 eV Total energy + Delta-G solvation = -3233.822619 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.40419 -40.39018 -37.84027 -36.86403 -36.28699 -34.42935 -33.61967 -32.86624 -29.88831 -28.91168 -27.85645 -24.61012 -23.59545 -22.65281 -21.70215 -20.39156 -19.10842 -18.60969 -17.54240 -17.11175 -16.74999 -16.58908 -16.34775 -15.88610 -15.21794 -15.04267 -14.90817 -14.53356 -14.40119 -14.08988 -13.79731 -13.34451 -13.12957 -13.08161 -12.86543 -12.71749 -12.31177 -11.96759 -11.93300 -11.68830 -11.60309 -11.56316 -10.92291 -10.37878 -9.96970 -9.76938 -8.39703 -8.26945 -6.47106 0.30905 0.35423 0.88242 1.34800 1.35175 1.37714 1.49627 1.97616 2.15477 2.29362 2.69295 2.96267 3.70322 3.75414 3.92362 4.22139 4.35490 4.51761 4.71909 4.74644 4.84013 4.85650 5.02611 5.08067 5.17387 5.24596 5.27551 5.34103 5.38645 5.47168 5.72057 5.96608 6.26519 6.41623 6.55795 7.10252 7.21795 7.42535 8.74680 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.034805 B = 0.003005 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.288111 B = 9317.013464 C =10100.851999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.027 4.027 3 C -0.183 4.183 4 C 0.221 3.779 5 N -0.541 5.541 6 N -0.524 5.524 7 C 0.705 3.295 8 O -0.624 6.624 9 N -0.716 5.716 10 C 0.248 3.752 11 C -0.547 4.547 12 H 0.061 0.939 13 C 0.028 3.972 14 N -0.930 5.930 15 Si 0.936 3.064 16 H -0.265 1.265 17 H -0.275 1.275 18 H -0.258 1.258 19 C -0.201 4.201 20 C -0.055 4.055 21 C -0.107 4.107 22 Cl -0.076 7.076 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.150 0.850 27 H 0.430 0.570 28 H 0.438 0.562 29 H 0.401 0.599 30 H 0.016 0.984 31 H 0.015 0.985 32 H 0.273 0.727 33 H 0.136 0.864 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.676 -22.384 0.042 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.028 4.028 3 C -0.207 4.207 4 C 0.118 3.882 5 N -0.271 5.271 6 N -0.279 5.279 7 C 0.404 3.596 8 O -0.503 6.503 9 N -0.371 5.371 10 C 0.124 3.876 11 C -0.585 4.585 12 H 0.079 0.921 13 C -0.172 4.172 14 N -0.568 5.568 15 Si 0.760 3.240 16 H -0.190 1.190 17 H -0.200 1.200 18 H -0.182 1.182 19 C -0.224 4.224 20 C -0.074 4.074 21 C -0.135 4.135 22 Cl -0.048 7.048 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.168 0.832 27 H 0.274 0.726 28 H 0.285 0.715 29 H 0.237 0.763 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.153 0.847 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.709 -22.096 0.044 23.403 hybrid contribution 0.270 0.440 -0.006 0.516 sum -7.439 -21.657 0.038 22.899 Atomic orbital electron populations 1.20948 0.88879 1.04171 1.03721 1.19672 0.97443 0.90340 0.95384 1.20472 0.90720 0.99092 1.10432 1.17912 0.91191 0.84587 0.94540 1.43455 0.92694 1.07308 1.83646 1.44218 0.94853 1.07815 1.81005 1.15837 0.84640 0.80556 0.78524 1.90948 1.12425 1.85456 1.61428 1.45119 1.10107 1.04462 1.77429 1.19065 0.92285 0.80181 0.96087 1.21236 0.94057 0.90325 1.52863 0.92076 1.25557 1.02426 0.95702 0.93540 1.69971 1.36527 0.99815 1.50530 0.85875 0.80244 0.78428 0.79467 1.19014 1.20020 1.18197 1.20553 1.00339 0.90481 1.11056 1.20915 0.91841 0.98762 0.95861 1.20673 0.92466 0.86769 1.13622 1.98331 1.76796 1.32288 1.97343 0.89696 0.89791 0.90656 0.83220 0.72620 0.71550 0.76307 0.96585 0.96698 0.91819 0.84669 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.61 71.24 0.68 -0.86 16 2 C -0.03 -0.45 5.88 -19.86 -0.12 -0.57 16 3 C -0.18 -3.20 9.55 22.39 0.21 -2.98 16 4 C 0.22 4.35 6.72 38.20 0.26 4.60 16 5 N -0.54 -11.85 6.45 -51.35 -0.33 -12.18 16 6 N -0.52 -13.88 6.22 -184.74 -1.15 -15.03 16 7 C 0.71 25.80 8.68 179.05 1.55 27.35 16 8 O -0.62 -27.69 17.18 -4.00 -0.07 -27.76 16 9 N -0.72 -27.52 5.51 -482.30 -2.66 -30.18 16 10 C 0.25 11.73 4.50 85.63 0.38 12.12 16 11 C -0.55 -29.11 9.83 25.60 0.25 -28.86 16 12 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 13 C 0.03 1.56 5.47 84.65 0.46 2.02 16 14 N -0.93 -54.21 13.96 21.45 0.30 -53.92 16 15 Si 0.94 42.86 27.47 68.60 1.88 44.74 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.26 -11.64 6.54 99.48 0.65 -10.99 16 19 C -0.20 -3.66 9.48 22.40 0.21 -3.45 16 20 C -0.05 -0.93 9.82 22.27 0.22 -0.71 16 21 C -0.11 -1.90 6.31 22.34 0.14 -1.76 16 22 Cl -0.08 -1.26 27.28 -2.72 -0.07 -1.34 16 23 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 25 H 0.07 0.96 6.90 -2.38 -0.02 0.94 16 26 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 27 H 0.43 8.89 6.71 -213.31 -1.43 7.46 16 28 H 0.44 9.89 6.70 -213.33 -1.43 8.46 16 29 H 0.40 13.26 6.24 -92.71 -0.58 12.69 16 30 H 0.02 0.80 7.20 -2.39 -0.02 0.79 16 31 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 32 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 33 H 0.14 2.14 6.20 -2.91 -0.02 2.12 16 34 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -65.68 306.69 -0.16 -65.84 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -2.33 Total: 22.93 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 4.26 Total: 6.89 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -3.84 Total: -111.30 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.07 Total: -27.76 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.07 Total: -1.34 kcal Total: -65.68 -0.16 -65.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922228649.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.090 kcal (2) G-P(sol) polarization free energy of solvation -65.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds