Wall clock time and date at job start Tue Mar 31 2020 05:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39015 * 119.99715 * 2 1 4 4 C 1.39285 * 119.91078 * 180.02562 * 3 2 1 5 5 C 1.36542 * 120.23629 * 180.27832 * 4 3 2 6 6 C 1.39886 * 120.06363 * 359.44767 * 5 4 3 7 7 C 1.47303 * 120.08685 * 180.28190 * 6 5 4 8 8 O 1.21526 * 119.99887 * 180.24107 * 7 6 5 9 9 O 1.34771 * 120.00088 * 0.24416 * 7 6 5 10 10 C 1.45200 * 117.00008 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46754 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46951 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99753 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00416 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99713 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00268 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46865 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46861 * 120.00244 * 16 14 12 19 19 H 1.48492 * 109.47145 * 240.00246 * 16 14 12 20 20 C 1.39993 * 119.82602 * 0.52128 * 6 5 4 21 21 Cl 1.73605 * 120.11988 * 179.77376 * 20 6 5 22 22 C 1.37821 * 119.76529 * 359.75770 * 20 6 5 23 23 H 1.09005 * 109.46970 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47061 * 299.99918 * 1 2 3 25 25 H 1.08999 * 109.47372 * 60.00142 * 1 2 3 26 26 H 0.96996 * 119.99944 * 180.02562 * 2 1 3 27 27 H 1.08002 * 119.87888 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.96660 * 179.72153 * 5 4 3 29 29 H 1.08993 * 109.47280 * 299.99933 * 10 9 7 30 30 H 1.09005 * 109.46793 * 60.00587 * 10 9 7 31 31 H 1.08993 * 109.47524 * 300.00214 * 11 10 9 32 32 H 1.09005 * 109.46640 * 60.00924 * 11 10 9 33 33 H 0.97001 * 120.00433 * 180.02562 * 15 14 12 34 34 H 1.08006 * 120.03413 * 180.02562 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2039 0.0000 4 6 3.5529 1.2018 -0.0005 5 6 4.2422 2.3804 0.0052 6 6 3.5510 3.5966 0.0000 7 6 4.2942 4.8684 -0.0001 8 8 3.6921 5.9240 -0.0003 9 8 5.6419 4.8613 -0.0002 10 6 6.3079 6.1516 -0.0008 11 6 7.8236 5.9431 -0.0001 12 6 8.5148 7.2822 -0.0002 13 1 7.9314 8.1911 -0.0003 14 6 9.8921 7.3472 -0.0001 15 7 10.6026 6.2405 -0.0005 16 14 10.7489 9.0071 -0.0009 17 1 9.7318 10.0891 -0.0009 18 1 11.5979 9.1265 1.2116 19 1 11.5980 9.1253 -1.2134 20 6 2.1511 3.6018 -0.0001 21 17 1.2856 5.1067 -0.0006 22 6 1.4624 2.4080 -0.0001 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.9500 -0.8400 -0.0004 27 1 4.0895 0.2646 -0.0005 28 1 5.3222 2.3737 0.0093 29 1 6.0180 6.7096 -0.8910 30 1 6.0180 6.7105 0.8890 31 1 8.1132 5.3852 0.8903 32 1 8.1138 5.3840 -0.8897 33 1 11.5715 6.2861 -0.0001 34 1 0.3824 2.4070 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922989476.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:53 Heat of formation + Delta-G solvation = -66.853307 kcal Electronic energy + Delta-G solvation = -18936.152476 eV Core-core repulsion = 15666.910603 eV Total energy + Delta-G solvation = -3269.241873 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23732 -39.10806 -36.72786 -35.82984 -35.51910 -33.28300 -31.08954 -30.69294 -29.82646 -26.70322 -25.07213 -23.32518 -22.42826 -21.09458 -20.42388 -18.22470 -17.33021 -16.73542 -16.22637 -15.77342 -15.62237 -14.96961 -14.79038 -14.50414 -14.38270 -13.98818 -13.59000 -13.34260 -12.79244 -12.54112 -12.32719 -12.28594 -11.74704 -11.53007 -11.16203 -11.13590 -10.95107 -10.69348 -10.60355 -10.29222 -9.81218 -9.53467 -9.43625 -9.22012 -9.01542 -8.40662 -7.84788 -6.06840 -4.10418 0.77287 1.12932 2.09589 2.86221 3.00206 3.29940 3.30367 3.38219 3.44584 3.74283 4.42997 4.58637 4.67347 4.81621 5.00292 5.07113 5.18937 5.22295 5.29406 5.29973 5.58104 5.80069 6.01755 6.16980 6.19861 6.23076 6.36580 6.72482 6.81195 7.10332 7.19576 7.62255 7.68485 7.92095 8.26783 8.40130 8.95496 9.53743 11.04829 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.031226 B = 0.003286 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.471632 B = 8518.027756 C = 9388.749684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.741 5.741 3 C 0.252 3.748 4 C -0.206 4.206 5 C 0.000 4.000 6 C -0.175 4.175 7 C 0.498 3.502 8 O -0.502 6.502 9 O -0.356 6.356 10 C 0.078 3.922 11 C 0.024 3.976 12 C -0.524 4.524 13 H 0.060 0.940 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.898 3.102 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.068 3.932 21 Cl -0.033 7.033 22 C -0.211 4.211 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.405 0.595 27 H 0.133 0.867 28 H 0.150 0.850 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.262 0.738 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.440 -15.252 0.007 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.369 5.369 3 C 0.146 3.854 4 C -0.229 4.229 5 C -0.019 4.019 6 C -0.179 4.179 7 C 0.343 3.657 8 O -0.392 6.392 9 O -0.273 6.273 10 C 0.005 3.995 11 C -0.013 4.013 12 C -0.562 4.562 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C 0.040 3.960 21 Cl -0.004 7.004 22 C -0.234 4.234 23 H 0.095 0.905 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.240 0.760 27 H 0.151 0.849 28 H 0.168 0.832 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.710 -14.821 0.007 25.467 hybrid contribution 0.601 0.732 0.001 0.947 sum -20.109 -14.089 0.007 24.553 Atomic orbital electron populations 1.21651 0.79736 1.02785 1.01678 1.44402 1.06181 1.05376 1.80898 1.17850 0.91170 0.85993 0.90385 1.20423 0.91617 0.99273 1.11556 1.21021 1.01146 0.89837 0.89891 1.18829 0.91031 0.92649 1.15374 1.20781 0.82192 0.88828 0.73905 1.90877 1.69675 1.32991 1.45671 1.86547 1.18905 1.38622 1.83199 1.23600 0.95134 0.79788 1.00947 1.19168 0.85189 0.98113 0.98799 1.21036 0.91438 0.91945 1.51759 0.92207 1.24980 0.97414 0.96853 0.94953 1.69982 1.06121 1.26756 1.50099 0.86428 0.79541 0.83782 0.77653 1.19584 1.20868 1.20863 1.20714 0.90757 0.88169 0.96375 1.98418 1.75529 1.30553 1.95852 1.20323 1.00120 0.89104 1.13881 0.90514 0.92455 0.92452 0.75984 0.84884 0.83213 0.92344 0.92351 0.95381 0.95379 0.92825 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 9.93 59.85 0.59 0.97 16 2 N -0.74 -4.63 5.86 -65.40 -0.38 -5.01 16 3 C 0.25 2.39 6.65 -83.87 -0.56 1.83 16 4 C -0.21 -2.05 9.82 -39.80 -0.39 -2.45 16 5 C 0.00 0.00 9.55 -39.58 -0.38 -0.37 16 6 C -0.17 -2.72 5.88 -104.94 -0.62 -3.33 16 7 C 0.50 9.62 7.88 34.42 0.27 9.89 16 8 O -0.50 -10.61 13.75 -19.29 -0.27 -10.87 16 9 O -0.36 -7.44 9.46 -40.68 -0.38 -7.82 16 10 C 0.08 1.79 5.41 37.16 0.20 2.00 16 11 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 12 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 13 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 16 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.07 0.95 6.35 -39.08 -0.25 0.70 16 21 Cl -0.03 -0.49 26.02 -51.86 -1.35 -1.84 16 22 C -0.21 -2.29 9.07 -39.39 -0.36 -2.64 16 23 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 24 H 0.06 0.26 7.93 -51.93 -0.41 -0.15 16 25 H 0.06 0.26 7.93 -51.93 -0.41 -0.15 16 26 H 0.41 1.72 8.83 -40.82 -0.36 1.36 16 27 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 28 H 0.15 1.88 7.60 -52.49 -0.40 1.49 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.14 1.21 6.70 -52.48 -0.35 0.86 16 LS Contribution 313.49 15.07 4.72 4.72 Total: -1.00 -32.79 313.49 -8.00 -40.79 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -4.01 Total: -4.20 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.04 Total: -6.56 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 0.35 Total: -30.88 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.65 Total: -18.69 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.35 Total: -1.84 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.79 -8.00 -40.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922989476.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.065 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds