Wall clock time and date at job start Tue Mar 31 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00444 * 2 1 4 4 H 1.48491 * 109.46987 * 239.99743 * 3 2 1 5 5 H 1.48502 * 109.47007 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47049 * 119.99339 * 3 2 1 7 7 C 1.37883 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99636 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47181 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47292 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47577 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00579 * 180.02562 * 12 11 10 14 14 O 1.21590 * 119.99505 * 359.97438 * 13 12 11 15 15 N 1.34768 * 120.00192 * 179.97438 * 13 12 11 16 16 C 1.39977 * 119.99984 * 184.67379 * 15 13 12 17 17 C 1.38895 * 120.47806 * 145.03983 * 16 15 13 18 18 N 1.31784 * 120.68539 * 179.97438 * 17 16 15 19 19 C 1.31873 * 121.81195 * 359.97438 * 18 17 16 20 20 C 1.38351 * 120.90241 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 120.39850 * 180.02562 * 20 19 18 22 22 C 1.38658 * 119.20444 * 0.02608 * 20 19 18 23 23 H 0.97007 * 119.99439 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47336 * 59.99323 * 9 7 2 25 25 H 1.08999 * 109.47073 * 299.99893 * 9 7 2 26 26 H 1.09004 * 109.46753 * 60.00181 * 10 9 7 27 27 H 1.08999 * 109.47320 * 300.00097 * 10 9 7 28 28 H 1.09001 * 109.47115 * 59.99745 * 11 10 9 29 29 H 1.08999 * 109.47183 * 300.00383 * 11 10 9 30 30 H 0.97001 * 119.99230 * 0.02562 * 12 11 10 31 31 H 0.97003 * 119.99871 * 4.67595 * 15 13 12 32 32 H 1.07996 * 119.65539 * 359.97438 * 17 16 15 33 33 H 1.08006 * 119.55050 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.82010 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9826 -7.3714 0.0019 14 8 0.7872 -7.5935 0.0020 15 7 2.8583 -8.3958 0.0020 16 6 2.3947 -9.7129 -0.0967 17 6 3.1275 -10.6676 -0.7900 18 7 2.6951 -11.9089 -0.8851 19 6 1.5616 -12.2944 -0.3323 20 6 0.7765 -11.4017 0.3755 21 17 -0.7130 -11.9235 1.0984 22 6 1.1937 -10.0853 0.5004 23 1 -0.4850 0.8402 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8717 -3.6045 0.8906 27 1 2.8717 -3.6045 -0.8894 28 1 0.8530 -5.0451 -0.8886 29 1 0.8536 -5.0445 0.8913 30 1 3.3856 -5.9235 0.0021 31 1 3.8099 -8.2204 0.0704 32 1 4.0613 -10.3898 -1.2561 33 1 1.2418 -13.3210 -0.4334 34 1 0.6010 -9.3665 1.0467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932114040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:05 Heat of formation + Delta-G solvation = -11.694996 kcal Electronic energy + Delta-G solvation = -18542.578661 eV Core-core repulsion = 15308.021383 eV Total energy + Delta-G solvation = -3234.557278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.16083 -39.66755 -36.93968 -35.98544 -35.06828 -33.47620 -32.22427 -31.40207 -30.01432 -26.77420 -24.42130 -23.81852 -22.81023 -21.15640 -20.53645 -18.77959 -17.95724 -17.28395 -16.71133 -16.38358 -15.68042 -15.44039 -14.82174 -14.65186 -14.45198 -14.12482 -14.09963 -13.47446 -12.88894 -12.37645 -12.33765 -11.95485 -11.90814 -11.54684 -11.13633 -10.92156 -10.83206 -10.68314 -10.53322 -9.98571 -9.93991 -9.58628 -9.49024 -9.19900 -9.07278 -8.58772 -8.41534 -6.06252 -4.09818 0.53848 0.83489 1.70991 2.35501 2.92731 3.28787 3.34001 3.35462 3.38308 3.96847 4.13390 4.39640 4.40707 4.56534 4.76088 4.83606 5.29552 5.48360 5.57008 5.67952 5.72342 5.77580 6.05694 6.29195 6.34165 6.50415 6.52730 6.78746 6.91476 7.45562 7.57440 7.69425 7.75451 7.91740 8.31232 8.35861 8.96517 9.54622 11.04955 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.038359 B = 0.002490 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.762687 B =11241.265316 C =11868.771327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.132 3.868 12 N -0.731 5.731 13 C 0.699 3.301 14 O -0.573 6.573 15 N -0.685 5.685 16 C 0.137 3.863 17 C 0.075 3.925 18 N -0.449 5.449 19 C 0.087 3.913 20 C -0.068 4.068 21 Cl -0.051 7.051 22 C -0.073 4.073 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.397 0.603 31 H 0.412 0.588 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.618 -23.407 0.841 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C 0.010 3.990 12 N -0.384 5.384 13 C 0.399 3.601 14 O -0.450 6.450 15 N -0.334 5.334 16 C 0.039 3.961 17 C -0.086 4.086 18 N -0.157 5.157 19 C -0.072 4.072 20 C -0.097 4.097 21 Cl -0.022 7.022 22 C -0.101 4.101 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.231 0.769 31 H 0.248 0.752 32 H 0.182 0.818 33 H 0.183 0.817 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.708 -24.002 0.434 24.675 hybrid contribution 0.709 1.806 0.540 2.014 sum 6.417 -22.196 0.975 23.126 Atomic orbital electron populations 1.69957 1.06070 1.26881 1.50300 1.25032 0.94866 0.99328 0.95202 0.86633 0.79563 0.83054 0.78593 1.20227 1.21242 1.20235 1.21150 0.92941 0.90913 1.51289 0.92688 1.19021 0.93813 0.90740 0.97745 1.21906 0.99864 0.93121 1.00978 1.21640 0.91222 0.83887 1.02291 1.45426 1.10975 1.04025 1.77996 1.16023 0.85127 0.80859 0.78117 1.90947 1.13790 1.83561 1.56661 1.42581 1.10404 1.02976 1.77394 1.18481 0.95651 0.84817 0.97198 1.22728 1.01001 0.88383 0.96497 1.67789 1.13296 1.16920 1.17741 1.22704 0.89963 1.00002 0.94484 1.21998 0.91277 0.95009 1.01434 1.98393 1.31778 1.90323 1.81732 1.21792 0.96355 0.94595 0.97402 0.92807 0.96214 0.96204 0.92634 0.92621 0.91545 0.91546 0.76874 0.75193 0.81811 0.81735 0.81815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.21 5.27 -26.74 -0.14 -2.35 16 11 C 0.13 2.15 5.67 -4.05 -0.02 2.13 16 12 N -0.73 -9.17 5.56 -65.23 -0.36 -9.53 16 13 C 0.70 9.34 8.42 -86.93 -0.73 8.61 16 14 O -0.57 -9.98 13.83 5.29 0.07 -9.90 16 15 N -0.68 -6.42 5.36 -14.13 -0.08 -6.49 16 16 C 0.14 1.42 6.32 -83.54 -0.53 0.89 16 17 C 0.07 0.66 11.12 -17.33 -0.19 0.47 16 18 N -0.45 -4.53 10.35 -13.06 -0.14 -4.66 16 19 C 0.09 0.82 10.98 -17.49 -0.19 0.63 16 20 C -0.07 -0.71 6.34 -39.38 -0.25 -0.96 16 21 Cl -0.05 -0.50 28.99 -51.86 -1.50 -2.01 16 22 C -0.07 -0.86 8.61 -39.07 -0.34 -1.19 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.40 3.70 8.49 -40.82 -0.35 3.36 16 31 H 0.41 2.27 8.84 -40.82 -0.36 1.91 16 32 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.17 1.15 8.06 -52.48 -0.42 0.72 16 34 H 0.16 2.23 6.32 -52.48 -0.33 1.90 16 LS Contribution 315.18 15.07 4.75 4.75 Total: -1.00 -32.53 315.18 -8.45 -40.97 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -3.96 Total: 0.86 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.94 Total: -4.40 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.16 Total: -46.36 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.53 -8.45 -40.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932114040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.277 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds