Wall clock time and date at job start Tue Mar 31 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00444 * 2 1 4 4 H 1.48491 * 109.46987 * 239.99743 * 3 2 1 5 5 H 1.48502 * 109.47007 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47049 * 119.99339 * 3 2 1 7 7 C 1.37883 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99636 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47181 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47292 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47577 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00579 * 180.02562 * 12 11 10 14 14 O 1.21590 * 119.99505 * 359.97438 * 13 12 11 15 15 N 1.34768 * 120.00192 * 179.97438 * 13 12 11 16 16 C 1.39977 * 119.99984 * 184.67379 * 15 13 12 17 17 C 1.38895 * 120.47806 * 145.03983 * 16 15 13 18 18 N 1.31784 * 120.68539 * 179.97438 * 17 16 15 19 19 C 1.31873 * 121.81195 * 359.97438 * 18 17 16 20 20 C 1.38351 * 120.90241 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 120.39850 * 180.02562 * 20 19 18 22 22 C 1.38658 * 119.20444 * 0.02608 * 20 19 18 23 23 H 0.97007 * 119.99439 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47336 * 59.99323 * 9 7 2 25 25 H 1.08999 * 109.47073 * 299.99893 * 9 7 2 26 26 H 1.09004 * 109.46753 * 60.00181 * 10 9 7 27 27 H 1.08999 * 109.47320 * 300.00097 * 10 9 7 28 28 H 1.09001 * 109.47115 * 59.99745 * 11 10 9 29 29 H 1.08999 * 109.47183 * 300.00383 * 11 10 9 30 30 H 0.97001 * 119.99230 * 0.02562 * 12 11 10 31 31 H 0.97003 * 119.99871 * 4.67595 * 15 13 12 32 32 H 1.07996 * 119.65539 * 359.97438 * 17 16 15 33 33 H 1.08006 * 119.55050 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.82010 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9826 -7.3714 0.0019 14 8 0.7872 -7.5935 0.0020 15 7 2.8583 -8.3958 0.0020 16 6 2.3947 -9.7129 -0.0967 17 6 3.1275 -10.6676 -0.7900 18 7 2.6951 -11.9089 -0.8851 19 6 1.5616 -12.2944 -0.3323 20 6 0.7765 -11.4017 0.3755 21 17 -0.7130 -11.9235 1.0984 22 6 1.1937 -10.0853 0.5004 23 1 -0.4850 0.8402 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8717 -3.6045 0.8906 27 1 2.8717 -3.6045 -0.8894 28 1 0.8530 -5.0451 -0.8886 29 1 0.8536 -5.0445 0.8913 30 1 3.3856 -5.9235 0.0021 31 1 3.8099 -8.2204 0.0704 32 1 4.0613 -10.3898 -1.2561 33 1 1.2418 -13.3210 -0.4334 34 1 0.6010 -9.3665 1.0467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932114040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:05 Heat of formation + Delta-G solvation = -34.330347 kcal Electronic energy + Delta-G solvation = -18543.560203 eV Core-core repulsion = 15308.021383 eV Total energy + Delta-G solvation = -3235.538821 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.05018 -40.61284 -37.73574 -37.23420 -36.15146 -35.26097 -33.32203 -32.77211 -30.98587 -28.47203 -25.54113 -24.87618 -24.06403 -22.37234 -21.98318 -19.76671 -18.94698 -18.42813 -18.00845 -17.55070 -16.82749 -16.62497 -16.34031 -15.84364 -15.54563 -15.37343 -15.16061 -14.35637 -14.24754 -13.75426 -13.67269 -13.52685 -13.13988 -12.72658 -12.54983 -12.40992 -12.37959 -12.00584 -11.76414 -11.65802 -11.41656 -11.21050 -10.77432 -10.54009 -10.41633 -10.20218 -9.40786 -8.18955 -6.30305 -0.21430 0.00693 0.92989 1.38708 1.43022 1.45172 1.53103 1.90384 2.42351 2.60384 3.04750 3.15116 3.46962 3.67081 3.75820 3.92592 4.14911 4.16264 4.23398 4.55992 4.79546 4.85660 4.95918 4.96654 5.00678 5.18034 5.38463 5.52840 5.53809 5.72252 5.79193 5.85502 6.22970 6.71057 6.86009 6.89282 7.34134 7.39466 8.92923 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.038359 B = 0.002490 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.762687 B =11241.265316 C =11868.771327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.148 3.852 12 N -0.717 5.717 13 C 0.698 3.302 14 O -0.617 6.617 15 N -0.662 5.662 16 C 0.125 3.875 17 C 0.090 3.910 18 N -0.461 5.461 19 C 0.093 3.907 20 C -0.076 4.076 21 Cl -0.052 7.052 22 C -0.091 4.091 23 H 0.263 0.737 24 H -0.008 1.008 25 H -0.008 1.008 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.417 0.583 31 H 0.433 0.567 32 H 0.200 0.800 33 H 0.188 0.812 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.410 -24.087 0.398 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.023 3.977 12 N -0.373 5.373 13 C 0.398 3.602 14 O -0.497 6.497 15 N -0.313 5.313 16 C 0.026 3.974 17 C -0.071 4.071 18 N -0.169 5.169 19 C -0.065 4.065 20 C -0.105 4.105 21 Cl -0.023 7.023 22 C -0.120 4.120 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.011 0.989 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.254 0.746 31 H 0.273 0.727 32 H 0.217 0.783 33 H 0.205 0.795 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.583 -24.716 -0.005 26.163 hybrid contribution -0.179 1.933 0.678 2.056 sum 8.404 -22.783 0.672 24.293 Atomic orbital electron populations 1.70110 1.07961 1.27833 1.51703 1.26022 0.95719 1.03554 0.94844 0.85486 0.78191 0.77995 0.79286 1.18986 1.21355 1.19001 1.21668 0.93795 0.91996 1.50428 0.91405 1.18941 0.94488 0.92950 0.95107 1.21591 0.98436 0.91478 1.02363 1.21159 0.91276 0.84332 1.00883 1.44995 1.11382 1.02998 1.77883 1.16117 0.84899 0.81436 0.77724 1.90935 1.16033 1.84241 1.58452 1.42227 1.10934 1.01814 1.76329 1.18599 0.95638 0.85227 0.97886 1.23221 1.01479 0.87430 0.94953 1.67900 1.13512 1.17400 1.18114 1.23070 0.89435 1.00771 0.93263 1.22053 0.91610 0.94822 1.02056 1.98388 1.31876 1.90236 1.81802 1.21735 0.97171 0.94865 0.98228 0.92849 0.98973 0.98939 0.91121 0.91132 0.93168 0.93073 0.74567 0.72660 0.78330 0.79475 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.55 13.29 21.45 0.28 -56.27 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.54 -29.38 9.11 25.60 0.23 -29.15 16 8 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 9 C 0.02 1.15 4.97 29.85 0.15 1.30 16 10 C -0.10 -3.59 5.27 30.59 0.16 -3.43 16 11 C 0.15 4.80 5.67 86.38 0.49 5.29 16 12 N -0.72 -16.94 5.56 -478.55 -2.66 -19.60 16 13 C 0.70 18.04 8.42 179.06 1.51 19.55 16 14 O -0.62 -21.87 13.83 -4.00 -0.06 -21.92 16 15 N -0.66 -11.10 5.36 -316.88 -1.70 -12.79 16 16 C 0.13 2.39 6.32 38.23 0.24 2.63 16 17 C 0.09 1.34 11.12 84.86 0.94 2.29 16 18 N -0.46 -8.16 10.35 -195.23 -2.02 -10.18 16 19 C 0.09 1.59 10.98 84.71 0.93 2.52 16 20 C -0.08 -1.55 6.34 22.40 0.14 -1.41 16 21 Cl -0.05 -1.02 28.99 -2.72 -0.08 -1.10 16 22 C -0.09 -2.14 8.61 22.60 0.19 -1.95 16 23 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 24 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 25 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H 0.07 2.32 8.14 -2.38 -0.02 2.31 16 27 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.42 6.57 8.49 -92.71 -0.79 5.78 16 31 H 0.43 3.38 8.84 -92.71 -0.82 2.56 16 32 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.19 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.14 4.00 6.32 -2.91 -0.02 3.98 16 Total: -1.00 -71.97 315.18 0.79 -71.17 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -0.46 Total: 7.78 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 5.46 Total: -2.11 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -6.09 Total: -98.84 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.06 Total: -21.92 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -71.97 0.79 -71.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932114040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.843 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds