Wall clock time and date at job start Tue Mar 31 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37929 * 119.57353 * 2 1 4 4 C 1.39417 * 119.10380 * 180.02562 * 3 2 1 5 5 N 1.39546 * 120.85381 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00551 * 212.51500 * 5 4 3 7 7 O 1.21579 * 119.99533 * 5.30087 * 6 5 4 8 8 N 1.34778 * 120.00238 * 185.30129 * 6 5 4 9 9 C 1.46501 * 120.00016 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.46927 * 179.97438 * 9 8 6 11 11 C 1.50704 * 109.46797 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00050 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99754 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00278 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00025 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47026 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47094 * 119.99640 * 15 13 11 18 18 H 1.48493 * 109.47436 * 240.00096 * 15 13 11 19 19 C 1.39355 * 118.29997 * 359.97438 * 4 3 2 20 20 C 1.38092 * 119.06284 * 0.27910 * 19 4 3 21 21 Cl 1.73597 * 119.60101 * 179.72409 * 20 19 4 22 22 N 1.31979 * 119.57362 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.47055 * 89.99955 * 1 2 3 24 24 H 1.09000 * 109.47057 * 210.00038 * 1 2 3 25 25 H 1.08999 * 109.47292 * 330.00183 * 1 2 3 26 26 H 1.08005 * 120.44891 * 0.04396 * 3 2 1 27 27 H 0.97003 * 119.99608 * 32.51422 * 5 4 3 28 28 H 0.97003 * 119.99749 * 359.97438 * 8 6 5 29 29 H 1.09000 * 109.47205 * 300.00495 * 9 8 6 30 30 H 1.09003 * 109.46415 * 60.00444 * 9 8 6 31 31 H 1.08995 * 109.47238 * 300.00191 * 10 9 8 32 32 H 1.08995 * 109.47232 * 60.00686 * 10 9 8 33 33 H 0.97001 * 120.00424 * 180.02562 * 14 13 11 34 34 H 1.07999 * 120.47051 * 179.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1877 1.1996 0.0000 4 6 3.5818 1.1882 -0.0005 5 7 4.3072 2.3802 0.0000 6 6 5.4981 2.4448 -0.6278 7 8 5.8960 1.4958 -1.2754 8 7 6.2478 3.5611 -0.5377 9 6 7.5426 3.6310 -1.2196 10 6 8.1834 4.9955 -0.9585 11 6 9.5150 5.0676 -1.6606 12 1 9.8686 4.2247 -2.2358 13 6 10.2819 6.2097 -1.5685 14 7 9.8516 7.2360 -0.8676 15 14 11.9328 6.2989 -2.4381 16 1 12.1851 5.0221 -3.1533 17 1 11.9183 7.4179 -3.4142 18 1 13.0070 6.5276 -1.4387 19 6 4.2324 -0.0442 -0.0005 20 6 3.4781 -1.2009 -0.0058 21 17 4.2741 -2.7436 -0.0132 22 7 2.1583 -1.1479 -0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6480 2.1352 0.0007 27 1 3.9544 3.1625 0.4522 28 1 5.9301 4.3183 -0.0213 29 1 8.1953 2.8442 -0.8416 30 1 7.3961 3.4979 -2.2916 31 1 7.5305 5.7820 -1.3369 32 1 8.3298 5.1291 0.1133 33 1 10.3910 8.0397 -0.8031 34 1 5.3112 -0.0939 -0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934215501.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:57 Heat of formation + Delta-G solvation = -12.572158 kcal Electronic energy + Delta-G solvation = -18775.913325 eV Core-core repulsion = 15541.318011 eV Total energy + Delta-G solvation = -3234.595315 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.04631 -39.57341 -36.80460 -35.78263 -34.84381 -33.06104 -32.70333 -31.19621 -29.36269 -27.93293 -25.04297 -23.54363 -22.84855 -21.07780 -20.75238 -18.71101 -17.74520 -16.68902 -16.42962 -16.10610 -15.46652 -15.25326 -14.92102 -14.57119 -14.42690 -13.85283 -13.65464 -13.39746 -13.15033 -12.61010 -12.36435 -12.34638 -11.77867 -11.38887 -11.28752 -11.14305 -10.93069 -10.68688 -10.44033 -10.39079 -9.81164 -9.65580 -9.33777 -9.03421 -8.94416 -8.60110 -8.43269 -6.16077 -4.19141 0.74367 0.95329 1.66873 2.54363 3.10781 3.24658 3.32665 3.37705 3.51846 4.08241 4.22760 4.40072 4.65377 4.73743 4.81424 5.14670 5.21534 5.29934 5.31390 5.42778 5.65659 5.86676 6.02276 6.11280 6.24211 6.49912 6.61705 6.71078 6.84215 7.44513 7.51724 7.58710 7.82182 7.98343 8.20555 8.56664 8.87008 9.46343 10.95545 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030092 B = 0.002905 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.253835 B = 9637.023785 C =10425.001589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.163 3.837 3 C -0.207 4.207 4 C 0.240 3.760 5 N -0.686 5.686 6 C 0.695 3.305 7 O -0.572 6.572 8 N -0.726 5.726 9 C 0.137 3.863 10 C 0.013 3.987 11 C -0.522 4.522 12 H 0.061 0.939 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.167 4.167 20 C 0.199 3.801 21 Cl -0.029 7.029 22 N -0.499 5.499 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.144 0.856 27 H 0.412 0.588 28 H 0.397 0.603 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.262 0.738 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.212 -11.025 4.883 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.025 3.975 3 C -0.231 4.231 4 C 0.134 3.866 5 N -0.333 5.333 6 C 0.395 3.605 7 O -0.448 6.448 8 N -0.379 5.379 9 C 0.015 3.985 10 C -0.025 4.025 11 C -0.561 4.561 12 H 0.079 0.921 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.191 4.191 20 C 0.035 3.965 21 Cl -0.001 7.001 22 N -0.214 5.214 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.162 0.838 27 H 0.248 0.752 28 H 0.231 0.769 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.038 -12.537 4.316 22.387 hybrid contribution 1.221 1.631 0.010 2.037 sum -16.817 -10.907 4.326 20.506 Atomic orbital electron populations 1.20725 0.87940 1.03738 1.03473 1.20868 0.96776 0.86446 0.93381 1.21729 0.92379 1.00342 1.08634 1.17545 0.90127 0.85735 0.93215 1.42703 1.20742 1.12476 1.57427 1.16080 0.79787 0.84531 0.80057 1.90950 1.71849 1.36990 1.45040 1.45618 1.21857 1.15345 1.55105 1.21743 0.79621 1.01452 0.95703 1.19340 0.95779 0.89474 0.97891 1.21063 1.02764 1.00608 1.31636 0.92089 1.24994 0.98419 0.95556 0.95294 1.69957 1.38176 1.04670 1.40471 0.86446 0.83443 0.78217 0.79416 1.19524 1.20904 1.20890 1.21855 1.03109 0.89645 1.04443 1.21309 0.89368 0.87373 0.98424 1.98405 1.77210 1.28085 1.96398 1.66836 1.08212 1.30146 1.16163 0.90027 0.90147 0.90335 0.83823 0.75169 0.76940 0.92269 0.92328 0.95877 0.95845 0.92835 0.82274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.17 36.00 0.37 -0.30 16 2 C 0.16 1.69 6.78 -82.65 -0.56 1.13 16 3 C -0.21 -2.02 9.68 -39.26 -0.38 -2.40 16 4 C 0.24 2.94 6.33 -83.49 -0.53 2.42 16 5 N -0.69 -7.96 5.36 -14.07 -0.08 -8.04 16 6 C 0.70 11.03 8.33 -86.92 -0.72 10.31 16 7 O -0.57 -11.25 14.04 5.30 0.07 -11.17 16 8 N -0.73 -11.53 5.56 -65.23 -0.36 -11.89 16 9 C 0.14 2.74 5.61 -4.04 -0.02 2.72 16 10 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 11 C -0.52 -14.05 9.11 -34.44 -0.31 -14.36 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -25.48 13.29 55.43 0.74 -24.75 16 15 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C -0.17 -2.35 8.50 -39.22 -0.33 -2.68 16 20 C 0.20 2.71 7.27 -17.49 -0.13 2.58 16 21 Cl -0.03 -0.37 29.10 -51.86 -1.51 -1.88 16 22 N -0.50 -6.45 10.25 -6.70 -0.07 -6.52 16 23 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.34 8.08 -51.93 -0.42 -0.08 16 26 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 27 H 0.41 3.22 8.84 -40.82 -0.36 2.86 16 28 H 0.40 5.20 8.49 -40.82 -0.35 4.85 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.16 2.49 6.47 -52.49 -0.34 2.15 16 LS Contribution 315.61 15.07 4.76 4.76 Total: -1.00 -31.97 315.61 -8.30 -40.27 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -3.97 Total: 2.17 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.86 Total: 1.11 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.23 Total: -51.19 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.51 Total: -1.88 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.97 -8.30 -40.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934215501.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.702 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds