Wall clock time and date at job start Tue Mar 31 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99886 * 2 1 4 4 H 1.48495 * 109.47372 * 270.00134 * 3 2 1 5 5 H 1.48508 * 109.47120 * 29.99867 * 3 2 1 6 6 H 1.48506 * 109.47169 * 149.99792 * 3 2 1 7 7 C 1.38807 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99919 * 196.48340 * 7 2 1 9 9 N 1.36936 * 120.00138 * 16.48322 * 7 2 1 10 10 C 1.46965 * 120.59670 * 208.42204 * 9 7 2 11 11 C 1.53376 * 108.63445 * 235.24889 * 10 9 7 12 12 N 1.46955 * 108.63549 * 310.57320 * 11 10 9 13 13 C 1.34774 * 120.59970 * 235.20301 * 12 11 10 14 14 O 1.21721 * 119.99326 * 6.12169 * 13 12 11 15 15 C 1.46552 * 120.00624 * 186.11671 * 13 12 11 16 16 C 1.37925 * 126.23579 * 223.92564 * 15 13 12 17 17 C 1.39750 * 107.12224 * 180.02562 * 16 15 13 18 18 C 1.35655 * 107.88576 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 125.57401 * 179.73644 * 18 17 16 20 20 N 1.35576 * 108.85058 * 359.97438 * 18 17 16 21 21 H 0.96998 * 125.70366 * 179.97438 * 20 18 17 22 22 C 1.46973 * 118.80999 * 55.48236 * 12 11 10 23 23 C 1.46965 * 120.59394 * 28.44312 * 9 7 2 24 24 H 0.96996 * 120.00349 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.61032 * 115.50395 * 10 9 7 26 26 H 1.09003 * 109.75075 * 355.07504 * 10 9 7 27 27 H 1.08999 * 109.60837 * 190.83053 * 11 10 9 28 28 H 1.08997 * 109.60546 * 70.32124 * 11 10 9 29 29 H 1.08005 * 126.43874 * 359.96913 * 16 15 13 30 30 H 1.07994 * 126.05292 * 180.02562 * 17 16 15 31 31 H 1.08995 * 109.61345 * 64.26241 * 22 12 11 32 32 H 1.09002 * 109.60706 * 184.77770 * 22 12 11 33 33 H 1.08987 * 109.61244 * 244.49814 * 23 9 7 34 34 H 1.08999 * 109.60833 * 5.00869 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0570 -1.2212 0.2659 9 7 1.3678 -2.3638 -0.3354 10 6 1.8127 -3.6512 0.2166 11 6 2.1014 -4.6093 -0.9458 12 7 0.9550 -4.5911 -1.8652 13 6 0.3232 -5.7345 -2.1966 14 8 0.6276 -6.7784 -1.6497 15 6 -0.7302 -5.7209 -3.2153 16 6 -1.9450 -6.3698 -3.1406 17 6 -2.6353 -6.0881 -4.3226 18 6 -1.8476 -5.2889 -5.0848 19 17 -2.2560 -4.6685 -6.6539 20 7 -0.6870 -5.0582 -4.4230 21 1 0.0508 -4.5175 -4.7458 22 6 0.5137 -3.3043 -2.4216 23 6 0.2214 -2.3456 -1.2548 24 1 -0.4850 0.8400 -0.0004 25 1 1.0289 -4.0686 0.8486 26 1 2.7188 -3.5063 0.8049 27 1 2.2454 -5.6187 -0.5607 28 1 2.9984 -4.2847 -1.4731 29 1 -2.2963 -6.9815 -2.3228 30 1 -3.6212 -6.4437 -4.5830 31 1 1.3003 -2.8891 -3.0515 32 1 -0.3911 -3.4519 -3.0113 33 1 -0.6756 -2.6700 -0.7275 34 1 0.0774 -1.3362 -1.6400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950352004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:01 Heat of formation + Delta-G solvation = 41.112057 kcal Electronic energy + Delta-G solvation = -20207.448764 eV Core-core repulsion = 16975.181371 eV Total energy + Delta-G solvation = -3232.267392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.45950 -39.18003 -36.91946 -36.77565 -33.99870 -31.74437 -31.18267 -30.32189 -29.10686 -26.92602 -24.06119 -23.10856 -22.15466 -20.85991 -20.39558 -19.61540 -18.04249 -16.75861 -16.06418 -15.59909 -15.25939 -14.81440 -14.34418 -14.09111 -13.79984 -13.60189 -13.47714 -13.35945 -13.08466 -12.78532 -12.39609 -11.94697 -11.65777 -11.42472 -11.40297 -10.91433 -10.85221 -10.58376 -10.33149 -10.14477 -9.95414 -9.74839 -9.19376 -8.68917 -8.45150 -8.17277 -6.80057 -5.92514 -3.38219 1.40615 1.55667 2.50464 2.98496 3.12584 3.29241 3.36875 3.38094 3.55842 4.37974 4.67984 5.11141 5.14810 5.21740 5.26527 5.64252 5.72132 5.78920 5.82102 5.92125 5.96851 6.07406 6.23081 6.30088 6.46341 6.65296 6.71800 6.81191 7.03869 7.10479 7.36899 7.64182 7.71375 8.28320 8.31829 9.04470 9.66663 10.23487 11.15304 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019318 B = 0.004908 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.096900 B = 5703.879797 C = 6735.806738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.591 5.591 10 C 0.131 3.869 11 C 0.096 3.904 12 N -0.591 5.591 13 C 0.581 3.419 14 O -0.539 6.539 15 C -0.009 4.009 16 C -0.119 4.119 17 C -0.172 4.172 18 C 0.075 3.925 19 Cl -0.021 7.021 20 N -0.529 5.529 21 H 0.422 0.578 22 C 0.072 3.928 23 C 0.161 3.839 24 H 0.256 0.744 25 H 0.026 0.974 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.154 0.846 30 H 0.152 0.848 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.026 0.974 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.074 -8.801 -10.755 14.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.314 5.314 10 C 0.004 3.996 11 C -0.028 4.028 12 N -0.323 5.323 13 C 0.368 3.632 14 O -0.416 6.416 15 C -0.124 4.124 16 C -0.145 4.145 17 C -0.198 4.198 18 C -0.066 4.066 19 Cl 0.007 6.993 20 N -0.129 5.129 21 H 0.261 0.739 22 C -0.053 4.053 23 C 0.034 3.966 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.884 -9.026 -10.588 14.209 hybrid contribution 0.625 1.409 -0.438 1.603 sum -2.259 -7.617 -11.026 13.590 Atomic orbital electron populations 1.69997 1.05313 1.25827 1.53482 1.25091 0.95325 0.98584 1.00457 0.86244 0.79142 0.83361 0.77735 1.21366 1.21641 1.20320 1.19225 0.92552 0.84462 1.42470 0.91347 1.43989 1.35510 1.01848 1.50011 1.21305 0.98673 0.86967 0.92673 1.22286 0.86845 1.01456 0.92225 1.48084 1.31828 1.06602 1.45751 1.17097 0.80411 0.83899 0.81823 1.90812 1.64664 1.31257 1.54917 1.20457 0.99557 1.03925 0.88414 1.21189 0.92331 1.01976 0.98974 1.20594 1.01101 1.03443 0.94677 1.20936 0.89896 1.06073 0.89741 1.98392 1.91985 1.86668 1.22249 1.42201 1.15350 1.40267 1.15126 0.73851 1.22947 0.98758 0.84196 0.99366 1.21232 0.89279 0.98256 0.87863 0.93379 0.95602 0.91312 0.89649 0.91647 0.82860 0.83010 0.91767 0.91078 0.95543 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.04 11.15 55.49 0.62 -24.42 16 2 C 0.00 0.12 4.93 -17.43 -0.09 0.03 16 3 Si 0.91 20.74 29.58 -169.99 -5.03 15.72 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.26 -6.70 9.58 -15.06 -0.14 -6.85 16 8 H 0.07 1.75 7.88 -52.48 -0.41 1.33 16 9 N -0.59 -14.06 2.97 -171.77 -0.51 -14.57 16 10 C 0.13 2.66 6.67 -3.59 -0.02 2.64 16 11 C 0.10 1.69 6.60 -3.60 -0.02 1.66 16 12 N -0.59 -10.40 2.94 -173.80 -0.51 -10.91 16 13 C 0.58 10.20 7.57 -12.91 -0.10 10.10 16 14 O -0.54 -10.81 16.51 5.17 0.09 -10.72 16 15 C -0.01 -0.14 5.73 -81.93 -0.47 -0.61 16 16 C -0.12 -1.62 10.85 -39.13 -0.42 -2.04 16 17 C -0.17 -2.03 10.78 -39.94 -0.43 -2.46 16 18 C 0.08 0.89 7.74 -16.82 -0.13 0.76 16 19 Cl -0.02 -0.21 29.30 -51.86 -1.52 -1.73 16 20 N -0.53 -6.60 4.71 -6.55 -0.03 -6.64 16 21 H 0.42 4.60 8.22 -40.82 -0.34 4.26 16 22 C 0.07 1.25 5.93 -3.36 -0.02 1.23 16 23 C 0.16 3.59 5.52 -3.36 -0.02 3.57 16 24 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 27 H 0.09 1.46 6.99 -51.93 -0.36 1.10 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16 30 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.11 5.22 -51.93 -0.27 0.84 16 33 H 0.03 0.64 8.14 -51.94 -0.42 0.22 16 34 H 0.10 2.51 5.97 -51.93 -0.31 2.20 16 LS Contribution 299.60 15.07 4.51 4.51 Total: -1.00 -29.70 299.60 -8.03 -37.73 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -3.78 Total: 3.01 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -1.87 Total: 8.03 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.43 Total: -56.54 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.52 Total: -1.73 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.70 -8.03 -37.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950352004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.841 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds