Wall clock time and date at job start Tue Mar 31 2020 06:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00302 * 2 1 4 4 H 1.48501 * 109.47402 * 270.00295 * 3 2 1 5 5 H 1.48498 * 109.46929 * 29.99830 * 3 2 1 6 6 H 1.48496 * 109.47115 * 150.00135 * 3 2 1 7 7 C 1.38819 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99832 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.65326 * 0.02562 * 9 7 2 11 11 C 1.54316 * 107.27365 * 180.79632 * 10 9 7 12 12 C 1.55160 * 102.94268 * 22.19228 * 11 10 9 13 13 H 1.08991 * 111.00600 * 82.57442 * 12 11 10 14 14 N 1.46502 * 111.00224 * 206.42392 * 12 11 10 15 15 C 1.34773 * 120.00024 * 204.99642 * 14 12 11 16 16 O 1.21714 * 119.99869 * 0.02562 * 15 14 12 17 17 C 1.46553 * 120.00396 * 180.02562 * 15 14 12 18 18 C 1.37932 * 126.23739 * 179.69042 * 17 15 14 19 19 C 1.39746 * 107.12460 * 179.84637 * 18 17 15 20 20 C 1.35665 * 107.88316 * 0.42292 * 19 18 17 21 21 Cl 1.73600 * 125.57123 * 179.76029 * 20 19 18 22 22 N 1.35569 * 108.85145 * 359.73491 * 20 19 18 23 23 H 0.97004 * 125.70064 * 179.97438 * 22 20 19 24 24 C 1.47425 * 125.64542 * 179.71718 * 9 7 2 25 25 H 0.97000 * 119.99477 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.87531 * 300.21350 * 10 9 7 27 27 H 1.09000 * 109.87938 * 61.37603 * 10 9 7 28 28 H 1.08997 * 110.72381 * 140.55486 * 11 10 9 29 29 H 1.09002 * 110.72355 * 263.82891 * 11 10 9 30 30 H 0.97005 * 120.00220 * 25.00616 * 14 12 11 31 31 H 1.07998 * 126.43323 * 359.97212 * 18 17 15 32 32 H 1.07997 * 126.05968 * 180.15479 * 19 18 17 33 33 H 1.09001 * 110.36478 * 274.97390 * 24 9 7 34 34 H 1.08998 * 110.36859 * 37.29768 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1376 -2.5328 -0.0028 11 6 -0.4486 -4.0441 0.0168 12 6 0.8515 -4.6590 0.5990 13 1 0.8561 -4.6043 1.6875 14 7 1.0287 -6.0402 0.1440 15 6 1.7587 -6.9031 0.8780 16 8 2.2703 -6.5350 1.9193 17 6 1.9365 -8.2847 0.4226 18 6 2.6582 -9.2687 1.0656 19 6 2.5593 -10.4259 0.2884 20 6 1.8026 -10.1339 -0.7991 21 17 1.3933 -11.2417 -2.0715 22 7 1.4179 -8.8358 -0.7294 23 1 0.8696 -8.3721 -1.3815 24 6 1.9333 -3.7312 -0.0082 25 1 -0.4849 0.8401 -0.0004 26 1 -0.5579 -2.0563 0.8830 27 1 -0.5541 -2.0802 -0.9027 28 1 -1.2989 -4.2546 0.6655 29 1 -0.6316 -4.4134 -0.9924 30 1 0.6208 -6.3336 -0.6858 31 1 3.1967 -9.1648 1.9960 32 1 3.0094 -11.3819 0.5115 33 1 2.1664 -4.0370 -1.0281 34 1 2.8327 -3.7436 0.6075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015667808.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:22 Heat of formation + Delta-G solvation = 31.058699 kcal Electronic energy + Delta-G solvation = -19376.725410 eV Core-core repulsion = 16144.022072 eV Total energy + Delta-G solvation = -3232.703339 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.59178 -39.29045 -37.27278 -37.01979 -34.20449 -32.11252 -31.42108 -29.65358 -28.99495 -27.07410 -24.62575 -22.90364 -21.14594 -20.52715 -20.44172 -20.04136 -19.05891 -16.98620 -16.44591 -15.82702 -15.44283 -14.68738 -14.52102 -14.29395 -14.06229 -14.00854 -13.28460 -13.21312 -12.75692 -12.48766 -12.32182 -12.05219 -11.85515 -11.63624 -11.08391 -10.96143 -10.79368 -10.48219 -10.13804 -9.98669 -9.96951 -9.73635 -9.45454 -8.94651 -8.63367 -8.43595 -6.88036 -5.74420 -3.08213 1.11163 1.26449 2.28020 2.88181 3.13129 3.29909 3.39909 3.45193 3.47318 4.48579 4.67284 4.88595 4.96532 5.20890 5.39164 5.54785 5.57327 5.65366 5.72528 5.79025 6.08435 6.15613 6.24049 6.33939 6.43621 6.47628 6.63372 6.76256 6.88947 7.47417 7.52692 7.54298 7.77723 8.16608 8.22532 9.18628 9.78382 10.42707 11.37536 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.036672 B = 0.003119 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.332640 B = 8975.917937 C = 9198.044318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.179 3.821 11 C -0.150 4.150 12 C 0.127 3.873 13 H 0.101 0.899 14 N -0.715 5.715 15 C 0.586 3.414 16 O -0.520 6.520 17 C -0.025 4.025 18 C -0.102 4.102 19 C -0.177 4.177 20 C 0.083 3.917 21 Cl -0.018 7.018 22 N -0.532 5.532 23 H 0.420 0.580 24 C 0.129 3.871 25 H 0.253 0.747 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.391 0.609 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.019 0.981 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.046 -21.779 -3.240 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.054 3.946 11 C -0.189 4.189 12 C 0.022 3.978 13 H 0.119 0.881 14 N -0.364 5.364 15 C 0.372 3.628 16 O -0.396 6.396 17 C -0.139 4.139 18 C -0.128 4.128 19 C -0.202 4.202 20 C -0.060 4.060 21 Cl 0.010 6.990 22 N -0.132 5.132 23 H 0.259 0.741 24 C 0.002 3.998 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.224 0.776 31 H 0.176 0.824 32 H 0.172 0.828 33 H 0.036 0.964 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.231 -21.223 -2.662 21.391 hybrid contribution -0.168 0.792 -1.094 1.361 sum 0.063 -20.431 -3.756 20.774 Atomic orbital electron populations 1.69946 1.04895 1.25129 1.57148 1.24812 0.95769 0.97727 1.02127 0.86080 0.78646 0.83273 0.77549 1.21608 1.21624 1.20598 1.19080 0.90534 0.82218 1.43797 0.90317 1.44387 1.01594 0.99768 1.87283 1.21155 0.84565 0.87286 1.01587 1.23199 0.95854 1.00166 0.99642 1.22396 0.97094 0.77991 1.00284 0.88073 1.45933 1.52845 1.12171 1.25500 1.16942 0.79088 0.82650 0.84144 1.90888 1.48330 1.77145 1.23223 1.20680 1.07565 0.95186 0.90480 1.21323 1.00299 0.90535 1.00685 1.20684 1.04660 1.00539 0.94362 1.21013 1.05876 0.83772 0.95324 1.98406 1.93063 1.57986 1.49502 1.42034 1.41961 1.08897 1.20338 0.74125 1.21819 0.94854 0.86173 0.96984 0.93704 0.93130 0.93496 0.91460 0.92164 0.77617 0.82360 0.82821 0.96381 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 10.31 55.49 0.57 -26.33 16 2 C -0.01 -0.23 5.49 -17.42 -0.10 -0.33 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.43 3.39 -170.07 -0.58 -16.01 16 10 C 0.18 4.22 5.37 -3.07 -0.02 4.21 16 11 C -0.15 -2.59 6.60 -24.90 -0.16 -2.76 16 12 C 0.13 2.23 3.42 -65.78 -0.23 2.01 16 13 H 0.10 1.97 7.54 -51.93 -0.39 1.58 16 14 N -0.71 -9.78 5.19 -53.07 -0.28 -10.05 16 15 C 0.59 8.65 7.78 -12.91 -0.10 8.55 16 16 O -0.52 -9.73 16.52 5.18 0.09 -9.65 16 17 C -0.03 -0.30 7.06 -81.93 -0.58 -0.88 16 18 C -0.10 -1.13 10.65 -39.13 -0.42 -1.54 16 19 C -0.18 -1.63 10.78 -39.94 -0.43 -2.06 16 20 C 0.08 0.75 7.74 -16.82 -0.13 0.62 16 21 Cl -0.02 -0.14 29.30 -51.86 -1.52 -1.66 16 22 N -0.53 -4.81 6.00 -6.54 -0.04 -4.85 16 23 H 0.42 2.77 8.19 -40.82 -0.33 2.43 16 24 C 0.13 2.73 6.93 -2.53 -0.02 2.72 16 25 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.05 1.32 7.40 -51.93 -0.38 0.94 16 27 H 0.05 1.21 7.49 -51.93 -0.39 0.82 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 30 H 0.39 4.05 7.70 -40.82 -0.31 3.73 16 31 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -32.34 306.69 -8.37 -40.72 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -3.89 Total: 2.10 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -2.33 Total: 3.96 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.32 Total: -57.24 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.52 Total: -1.66 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.34 -8.37 -40.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015667808.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.774 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds