Wall clock time and date at job start Tue Mar 31 2020 06:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00302 * 2 1 4 4 H 1.48501 * 109.47402 * 270.00295 * 3 2 1 5 5 H 1.48498 * 109.46929 * 29.99830 * 3 2 1 6 6 H 1.48496 * 109.47115 * 150.00135 * 3 2 1 7 7 C 1.38819 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99832 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.65326 * 0.02562 * 9 7 2 11 11 C 1.54316 * 107.27365 * 180.79632 * 10 9 7 12 12 C 1.55160 * 102.94268 * 22.19228 * 11 10 9 13 13 H 1.08991 * 111.00600 * 82.57442 * 12 11 10 14 14 N 1.46502 * 111.00224 * 206.42392 * 12 11 10 15 15 C 1.34773 * 120.00024 * 204.99642 * 14 12 11 16 16 O 1.21714 * 119.99869 * 0.02562 * 15 14 12 17 17 C 1.46553 * 120.00396 * 180.02562 * 15 14 12 18 18 C 1.37932 * 126.23739 * 179.69042 * 17 15 14 19 19 C 1.39746 * 107.12460 * 179.84637 * 18 17 15 20 20 C 1.35665 * 107.88316 * 0.42292 * 19 18 17 21 21 Cl 1.73600 * 125.57123 * 179.76029 * 20 19 18 22 22 N 1.35569 * 108.85145 * 359.73491 * 20 19 18 23 23 H 0.97004 * 125.70064 * 179.97438 * 22 20 19 24 24 C 1.47425 * 125.64542 * 179.71718 * 9 7 2 25 25 H 0.97000 * 119.99477 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.87531 * 300.21350 * 10 9 7 27 27 H 1.09000 * 109.87938 * 61.37603 * 10 9 7 28 28 H 1.08997 * 110.72381 * 140.55486 * 11 10 9 29 29 H 1.09002 * 110.72355 * 263.82891 * 11 10 9 30 30 H 0.97005 * 120.00220 * 25.00616 * 14 12 11 31 31 H 1.07998 * 126.43323 * 359.97212 * 18 17 15 32 32 H 1.07997 * 126.05968 * 180.15479 * 19 18 17 33 33 H 1.09001 * 110.36478 * 274.97390 * 24 9 7 34 34 H 1.08998 * 110.36859 * 37.29768 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1376 -2.5328 -0.0028 11 6 -0.4486 -4.0441 0.0168 12 6 0.8515 -4.6590 0.5990 13 1 0.8561 -4.6043 1.6875 14 7 1.0287 -6.0402 0.1440 15 6 1.7587 -6.9031 0.8780 16 8 2.2703 -6.5350 1.9193 17 6 1.9365 -8.2847 0.4226 18 6 2.6582 -9.2687 1.0656 19 6 2.5593 -10.4259 0.2884 20 6 1.8026 -10.1339 -0.7991 21 17 1.3933 -11.2417 -2.0715 22 7 1.4179 -8.8358 -0.7294 23 1 0.8696 -8.3721 -1.3815 24 6 1.9333 -3.7312 -0.0082 25 1 -0.4849 0.8401 -0.0004 26 1 -0.5579 -2.0563 0.8830 27 1 -0.5541 -2.0802 -0.9027 28 1 -1.2989 -4.2546 0.6655 29 1 -0.6316 -4.4134 -0.9924 30 1 0.6208 -6.3336 -0.6858 31 1 3.1967 -9.1648 1.9960 32 1 3.0094 -11.3819 0.5115 33 1 2.1664 -4.0370 -1.0281 34 1 2.8327 -3.7436 0.6075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015667808.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:22 Heat of formation + Delta-G solvation = 8.515446 kcal Electronic energy + Delta-G solvation = -19377.702959 eV Core-core repulsion = 16144.022072 eV Total energy + Delta-G solvation = -3233.680888 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.42855 -40.54976 -38.84666 -37.72841 -35.74947 -33.88549 -32.30020 -31.18904 -30.28016 -28.66913 -26.51519 -24.06220 -22.15304 -22.12754 -21.53422 -21.31122 -20.15309 -18.91970 -17.62082 -17.09816 -16.66028 -16.45174 -15.98101 -15.51904 -15.24306 -15.01767 -14.69565 -14.20962 -14.03771 -14.01342 -13.74021 -13.69935 -12.98161 -12.80666 -12.73376 -12.46337 -12.29565 -12.17308 -12.05356 -11.83985 -11.62222 -11.29778 -10.73692 -10.28849 -10.19774 -9.26022 -8.94267 -7.88409 -5.24610 0.20747 0.54435 1.45247 1.47173 1.48704 1.56144 1.91914 2.19405 2.23912 2.49016 3.30456 3.62928 3.63576 3.88986 4.00413 4.12362 4.16698 4.24029 4.54472 4.67038 4.77957 4.84605 4.92521 5.00180 5.07574 5.34228 5.41177 5.45328 5.61183 5.66164 5.71738 6.08757 6.16511 6.44073 7.04684 7.07837 7.72448 8.35343 9.21615 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.036672 B = 0.003119 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.332640 B = 8975.917937 C = 9198.044318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.062 4.062 3 Si 0.980 3.020 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.626 5.626 10 C 0.184 3.816 11 C -0.128 4.128 12 C 0.146 3.854 13 H 0.081 0.919 14 N -0.700 5.700 15 C 0.589 3.411 16 O -0.567 6.567 17 C -0.046 4.046 18 C -0.106 4.106 19 C -0.179 4.179 20 C 0.091 3.909 21 Cl 0.001 6.999 22 N -0.521 5.521 23 H 0.432 0.568 24 C 0.128 3.872 25 H 0.249 0.751 26 H 0.014 0.986 27 H 0.018 0.982 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.411 0.589 31 H 0.158 0.842 32 H 0.177 0.823 33 H 0.032 0.968 34 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.051 -23.864 -4.409 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.808 3.192 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.353 5.353 10 C 0.058 3.942 11 C -0.166 4.166 12 C 0.040 3.960 13 H 0.099 0.901 14 N -0.351 5.351 15 C 0.377 3.623 16 O -0.446 6.446 17 C -0.159 4.159 18 C -0.133 4.133 19 C -0.204 4.204 20 C -0.052 4.052 21 Cl 0.029 6.971 22 N -0.122 5.122 23 H 0.273 0.727 24 C 0.001 3.999 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.036 0.964 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.248 0.752 31 H 0.175 0.825 32 H 0.194 0.806 33 H 0.049 0.951 34 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.222 -23.352 -3.880 23.673 hybrid contribution -0.135 1.320 -0.777 1.538 sum 0.087 -22.032 -4.658 22.519 Atomic orbital electron populations 1.70155 1.06134 1.25467 1.57906 1.25644 0.96717 1.00923 1.02232 0.85062 0.77586 0.78979 0.77598 1.20978 1.21784 1.19711 1.19426 0.90937 0.83734 1.43623 0.90429 1.44669 1.02695 1.00702 1.87206 1.20951 0.83423 0.91322 0.98471 1.23010 0.96214 0.95267 1.02143 1.21867 0.95751 0.79420 0.98939 0.90082 1.45612 1.52853 1.10340 1.26257 1.17257 0.78013 0.83625 0.83368 1.90866 1.50193 1.78222 1.25286 1.20145 1.09743 0.93852 0.92190 1.21525 0.99788 0.91099 1.00842 1.20954 1.04634 1.00878 0.93966 1.21199 1.04785 0.83770 0.95477 1.98424 1.92859 1.57218 1.48606 1.41930 1.41636 1.08932 1.19711 0.72726 1.21933 0.95219 0.85271 0.97480 0.94189 0.96756 0.96360 0.89107 0.88952 0.75235 0.82464 0.80596 0.95054 0.95446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.72 10.31 21.65 0.22 -56.50 16 2 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 3 Si 0.98 46.20 29.55 68.60 2.03 48.23 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.25 -14.26 10.28 84.04 0.86 -13.40 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 N -0.63 -32.66 3.39 -691.98 -2.35 -35.01 16 10 C 0.18 8.81 5.37 86.73 0.47 9.28 16 11 C -0.13 -4.22 6.60 31.78 0.21 -4.01 16 12 C 0.15 5.03 3.42 46.38 0.16 5.19 16 13 H 0.08 3.18 7.54 -2.39 -0.02 3.16 16 14 N -0.70 -17.89 5.19 -440.03 -2.29 -20.18 16 15 C 0.59 16.85 7.78 86.41 0.67 17.52 16 16 O -0.57 -21.40 16.52 -4.39 -0.07 -21.47 16 17 C -0.05 -1.00 7.06 40.30 0.28 -0.72 16 18 C -0.11 -2.17 10.65 22.56 0.24 -1.93 16 19 C -0.18 -2.83 10.78 22.04 0.24 -2.59 16 20 C 0.09 1.38 7.74 83.52 0.65 2.03 16 21 Cl 0.00 0.01 29.30 -2.72 -0.08 -0.07 16 22 N -0.52 -8.01 6.00 -174.61 -1.05 -9.05 16 23 H 0.43 4.30 8.19 -92.71 -0.76 3.55 16 24 C 0.13 5.42 6.93 86.86 0.60 6.02 16 25 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 26 H 0.01 0.77 7.40 -2.38 -0.02 0.76 16 27 H 0.02 0.97 7.49 -2.39 -0.02 0.95 16 28 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.09 2.49 8.00 -2.39 -0.02 2.47 16 30 H 0.41 7.25 7.70 -92.70 -0.71 6.54 16 31 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 32 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -72.14 306.69 0.94 -71.20 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -0.32 Total: 8.56 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 4.85 Total: 14.30 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -5.46 Total: -120.74 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.07 Total: -21.47 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.08 Total: -0.07 kcal Total: -72.14 0.94 -71.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015667808.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.711 kcal (2) G-P(sol) polarization free energy of solvation -72.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds