Wall clock time and date at job start Tue Mar 31 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48503 * 109.46682 * 269.99759 * 3 2 1 5 5 H 1.48493 * 109.47147 * 29.99439 * 3 2 1 6 6 H 1.48497 * 109.46891 * 150.00070 * 3 2 1 7 7 C 1.38809 * 119.99445 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00207 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99513 * 180.02562 * 7 2 1 10 10 C 1.46495 * 119.99860 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.85083 * 336.18581 * 10 9 7 12 12 C 1.53777 * 113.69668 * 107.45834 * 10 9 7 13 13 C 1.53778 * 87.08288 * 139.98920 * 12 10 9 14 14 H 1.08995 * 113.69749 * 220.00591 * 13 12 10 15 15 N 1.46504 * 113.61282 * 89.11897 * 13 12 10 16 16 C 1.34777 * 120.00348 * 107.50701 * 15 13 12 17 17 O 1.21700 * 119.99737 * 359.97438 * 16 15 13 18 18 C 1.46668 * 120.00284 * 180.02562 * 16 15 13 19 19 C 1.37894 * 126.22594 * 180.02562 * 18 16 15 20 20 C 1.39888 * 107.09662 * 179.97438 * 19 18 16 21 21 Cl 1.73596 * 126.07368 * 180.02562 * 20 19 18 22 22 C 1.35516 * 107.85348 * 0.02562 * 20 19 18 23 23 N 1.35635 * 108.85219 * 0.02562 * 22 20 19 24 24 H 0.96994 * 125.67765 * 180.26619 * 23 22 20 25 25 C 1.53781 * 87.08183 * 334.57017 * 13 12 10 26 26 H 0.97000 * 119.99580 * 0.02562 * 1 2 3 27 27 H 0.96998 * 119.99997 * 359.97438 * 9 7 2 28 28 H 1.09001 * 113.61455 * 25.44535 * 12 10 9 29 29 H 1.08997 * 113.61645 * 254.53985 * 12 10 9 30 30 H 0.97005 * 119.99961 * 287.49885 * 15 13 12 31 31 H 1.07999 * 126.44999 * 0.02562 * 19 18 16 32 32 H 1.07999 * 125.57956 * 180.02562 * 22 20 19 33 33 H 1.08997 * 113.61511 * 139.97963 * 25 13 12 34 34 H 1.09003 * 113.61564 * 270.87857 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4709 0.0011 11 1 3.5277 -3.2971 0.4062 12 6 4.7874 -2.7946 -1.3420 13 6 5.9842 -3.3111 -0.5261 14 1 6.9518 -3.0461 -0.9520 15 7 5.8867 -4.7302 -0.1753 16 6 6.6769 -5.6323 -0.7903 17 8 7.4711 -5.2682 -1.6374 18 6 6.5788 -7.0531 -0.4395 19 6 7.3207 -8.0800 -0.9840 20 6 6.9045 -9.2623 -0.3628 21 17 7.5191 -10.8546 -0.6797 22 6 5.9364 -8.9438 0.5304 23 7 5.7287 -7.6039 0.4925 24 1 5.0911 -7.1147 1.0355 25 6 5.5258 -2.3660 0.5971 26 1 -0.4849 0.8401 -0.0004 27 1 3.8646 -0.3622 0.0007 28 1 5.0151 -1.9123 -1.9401 29 1 4.2781 -3.5728 -1.9105 30 1 5.2534 -5.0205 0.4997 31 1 8.0806 -7.9886 -1.7460 32 1 5.4154 -9.6424 1.1682 33 1 5.6126 -2.7981 1.5939 34 1 5.9553 -1.3665 0.5291 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019985678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:53 Heat of formation + Delta-G solvation = 39.307378 kcal Electronic energy + Delta-G solvation = -19026.919209 eV Core-core repulsion = 15794.573560 eV Total energy + Delta-G solvation = -3232.345649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.70381 -39.80702 -37.99750 -36.65643 -34.30942 -32.82396 -31.25799 -30.63628 -29.43895 -25.34826 -25.00329 -23.31978 -21.96532 -21.07706 -20.53510 -19.41039 -19.15535 -17.55511 -16.38890 -15.81893 -15.50525 -15.04221 -14.82090 -14.51620 -14.20686 -14.01214 -13.73370 -13.28289 -13.20418 -12.73098 -12.35613 -12.28264 -12.11251 -12.10096 -11.12242 -11.08612 -10.97942 -10.52297 -10.29016 -10.23928 -10.00242 -9.66036 -9.25054 -9.10331 -8.97341 -8.59399 -7.37242 -5.87083 -3.23587 1.08925 1.88433 2.12465 2.72802 3.03852 3.13955 3.30696 3.33836 3.39455 4.50198 4.52669 4.59855 4.78082 4.86435 4.98190 5.15813 5.25258 5.32250 5.55987 5.58375 5.66122 5.83748 5.99166 6.06385 6.08557 6.20610 6.31379 6.41481 6.46867 6.81339 6.84580 7.34534 7.87502 8.00824 8.32284 9.09408 9.82047 10.01180 11.30904 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.039597 B = 0.002887 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.952906 B = 9697.186791 C =10141.321450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.252 4.252 8 H 0.090 0.910 9 N -0.736 5.736 10 C 0.172 3.828 11 H 0.080 0.920 12 C -0.176 4.176 13 C 0.117 3.883 14 H 0.101 0.899 15 N -0.706 5.706 16 C 0.590 3.410 17 O -0.525 6.525 18 C -0.036 4.036 19 C -0.096 4.096 20 C -0.128 4.128 21 Cl -0.049 7.049 22 C 0.042 3.958 23 N -0.530 5.530 24 H 0.425 0.575 25 C -0.162 4.162 26 H 0.261 0.739 27 H 0.364 0.636 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.395 0.605 31 H 0.158 0.842 32 H 0.181 0.819 33 H 0.067 0.933 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.195 -17.998 2.958 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.108 0.892 9 N -0.375 5.375 10 C 0.061 3.939 11 H 0.098 0.902 12 C -0.218 4.218 13 C 0.012 3.988 14 H 0.119 0.881 15 N -0.356 5.356 16 C 0.377 3.623 17 O -0.401 6.401 18 C -0.149 4.149 19 C -0.122 4.122 20 C -0.161 4.161 21 Cl -0.020 7.020 22 C -0.096 4.096 23 N -0.127 5.127 24 H 0.264 0.736 25 C -0.202 4.202 26 H 0.071 0.929 27 H 0.197 0.803 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.229 0.771 31 H 0.175 0.825 32 H 0.199 0.801 33 H 0.086 0.914 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.430 -17.742 2.400 22.995 hybrid contribution -0.124 1.072 0.555 1.213 sum 14.306 -16.670 2.955 22.165 Atomic orbital electron populations 1.69706 1.05164 1.26015 1.56946 1.24710 0.95276 0.97368 1.01648 0.86539 0.79186 0.84825 0.77902 1.20942 1.21645 1.20259 1.19103 0.80614 0.94759 1.43730 0.89212 1.42737 1.04128 1.01931 1.88743 1.21599 0.89394 0.90075 0.92864 0.90211 1.24292 0.96431 1.00987 1.00112 1.21843 1.00289 0.78556 0.98105 0.88085 1.45570 1.40302 1.07619 1.42059 1.16921 0.80860 0.83100 0.81452 1.90860 1.37600 1.79443 1.32211 1.20442 1.00631 0.93693 1.00159 1.21172 1.01002 0.88754 1.01297 1.19959 1.03772 0.87364 1.05039 1.98332 1.86825 1.21654 1.95214 1.21761 1.00856 0.84474 1.02516 1.41956 1.31557 1.07255 1.31894 0.73569 1.23899 0.99383 0.99446 0.97484 0.92930 0.80314 0.89410 0.91857 0.77137 0.82481 0.80146 0.91440 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.56 13.97 55.49 0.78 -27.79 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.89 21.46 27.74 -169.99 -4.71 16.75 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.24 6.52 56.52 0.37 -5.88 16 7 C -0.25 -6.83 10.45 -15.06 -0.16 -6.99 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 9 N -0.74 -16.41 5.21 -52.64 -0.27 -16.68 16 10 C 0.17 2.97 4.35 -67.12 -0.29 2.67 16 11 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 12 C -0.18 -2.79 7.68 -25.92 -0.20 -2.99 16 13 C 0.12 1.57 4.32 -67.12 -0.29 1.28 16 14 H 0.10 1.42 7.46 -51.93 -0.39 1.03 16 15 N -0.71 -8.00 5.26 -54.33 -0.29 -8.29 16 16 C 0.59 7.61 7.79 -12.86 -0.10 7.51 16 17 O -0.53 -8.71 16.48 5.19 0.09 -8.62 16 18 C -0.04 -0.38 7.06 -81.98 -0.58 -0.96 16 19 C -0.10 -1.03 10.65 -39.09 -0.42 -1.45 16 20 C -0.13 -1.19 6.66 -39.94 -0.27 -1.46 16 21 Cl -0.05 -0.43 29.30 -51.86 -1.52 -1.95 16 22 C 0.04 0.29 11.87 -16.84 -0.20 0.09 16 23 N -0.53 -3.79 6.00 -9.35 -0.06 -3.85 16 24 H 0.43 1.83 8.19 -40.82 -0.33 1.50 16 25 C -0.16 -2.22 7.58 -25.92 -0.20 -2.41 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.36 7.99 5.79 -40.82 -0.24 7.75 16 28 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.39 3.42 7.83 -40.82 -0.32 3.10 16 31 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.18 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.26 8.12 -51.93 -0.42 0.84 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -33.35 310.98 -7.92 -41.27 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -3.82 Total: 9.09 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -2.79 Total: -4.62 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.16 Total: -56.60 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.71 Total: 16.75 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.52 Total: -1.95 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.35 -7.92 -41.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019985678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.577 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds