Wall clock time and date at job start Tue Mar 31 2020 06:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48497 * 109.47359 * 355.35744 * 3 2 1 5 5 H 1.48503 * 109.47030 * 115.35999 * 3 2 1 6 6 H 1.48505 * 109.46945 * 235.35849 * 3 2 1 7 7 C 1.38816 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99662 * 352.25981 * 7 2 1 9 9 N 1.36935 * 119.99877 * 172.25761 * 7 2 1 10 10 C 1.47070 * 136.05569 * 6.39398 * 9 7 2 11 11 C 1.53757 * 87.88788 * 152.96246 * 10 9 7 12 12 N 1.46499 * 114.26765 * 139.78933 * 11 10 9 13 13 C 1.34775 * 120.00123 * 111.47706 * 12 11 10 14 14 O 1.21558 * 119.99627 * 359.97438 * 13 12 11 15 15 C 1.47878 * 120.00119 * 180.02562 * 13 12 11 16 16 N 1.32839 * 119.71986 * 359.72499 * 15 13 12 17 17 C 1.31377 * 121.68445 * 179.70980 * 16 15 13 18 18 C 1.38995 * 120.93273 * 0.57031 * 17 16 15 19 19 F 1.35100 * 120.32823 * 179.74586 * 18 17 16 20 20 C 1.38725 * 119.34561 * 359.71955 * 18 17 16 21 21 C 1.38831 * 118.44553 * 0.02562 * 20 18 17 22 22 F 1.35096 * 120.48555 * 179.97438 * 21 20 18 23 23 C 1.47066 * 136.05905 * 186.76278 * 9 7 2 24 24 H 0.97004 * 120.00412 * 184.87714 * 1 2 3 25 25 H 1.09004 * 113.46535 * 267.69639 * 10 9 7 26 26 H 1.08996 * 113.46991 * 38.13336 * 10 9 7 27 27 H 1.08993 * 114.39362 * 272.67803 * 11 10 9 28 28 H 0.97001 * 120.00057 * 291.47548 * 12 11 10 29 29 H 1.07998 * 119.52833 * 180.29022 * 17 16 15 30 30 H 1.07995 * 120.77732 * 180.02562 * 20 18 17 31 31 H 1.09001 * 113.46790 * 321.86691 * 23 9 7 32 32 H 1.09000 * 113.46631 * 92.30253 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2892 2.7442 -0.1133 5 1 3.0170 1.7466 1.2652 6 1 3.1869 1.6484 -1.1519 7 6 2.0102 -1.2022 0.0005 8 1 1.4776 -2.1331 0.1269 9 7 3.3702 -1.2077 -0.1592 10 6 4.4312 -0.1923 -0.2389 11 6 5.4059 -1.2502 0.3041 12 7 6.7259 -1.2352 -0.3312 13 6 7.8078 -0.8461 0.3720 14 8 7.6882 -0.5073 1.5332 15 6 9.1402 -0.8304 -0.2694 16 7 9.2651 -1.2061 -1.5375 17 6 10.4289 -1.2017 -2.1470 18 6 11.5838 -0.8119 -1.4791 19 9 12.7750 -0.8169 -2.1163 20 6 11.5011 -0.4171 -0.1518 21 6 10.2572 -0.4268 0.4648 22 9 10.1294 -0.0508 1.7560 23 6 4.4119 -2.2311 -0.3331 24 1 -0.4851 -0.8370 0.0714 25 1 4.6554 0.1221 -1.2583 26 1 4.2793 0.6483 0.4381 27 1 5.4518 -1.3039 1.3917 28 1 6.8212 -1.5052 -1.2580 29 1 10.4897 -1.5097 -3.1804 30 1 12.3836 -0.1093 0.3892 31 1 4.2436 -3.1276 0.2637 32 1 4.6311 -2.4543 -1.3773 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030533992.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:28 Heat of formation + Delta-G solvation = -13.936383 kcal Electronic energy + Delta-G solvation = -21302.492979 eV Core-core repulsion = 17516.041826 eV Total energy + Delta-G solvation = -3786.451152 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.71386 -49.39939 -40.83296 -39.46393 -37.97676 -33.97199 -32.95154 -32.16583 -31.34414 -27.84295 -25.43699 -25.38467 -24.37939 -22.72848 -20.93252 -19.96979 -18.78377 -18.68437 -18.05244 -17.47672 -16.82041 -16.44521 -16.17196 -15.91685 -15.60636 -15.31483 -14.96982 -14.80614 -14.06596 -13.86260 -13.83897 -13.37973 -13.15648 -12.99848 -12.28856 -12.04311 -11.65037 -11.45721 -10.76417 -10.59066 -10.46597 -10.39269 -10.04468 -9.62730 -9.49326 -9.22726 -8.89035 -8.60915 -7.20551 -6.35300 -3.27247 -0.18225 0.26183 2.28224 2.81724 3.14332 3.22477 3.43395 3.44371 3.46779 3.59043 3.66125 3.95753 4.13890 4.48460 4.58326 4.73863 4.86486 5.02991 5.07262 5.13871 5.39548 5.70184 5.83300 5.85261 6.14028 6.23511 6.28607 6.31907 6.82690 6.94153 7.02954 7.54681 8.13441 8.20761 8.94116 9.45921 10.29776 11.17525 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.032451 B = 0.003703 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.644658 B = 7560.392002 C = 7755.431284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.022 4.022 3 Si 1.069 2.931 4 H -0.294 1.294 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.307 4.307 8 H 0.086 0.914 9 N -0.621 5.621 10 C 0.088 3.912 11 C 0.097 3.903 12 N -0.689 5.689 13 C 0.566 3.434 14 O -0.519 6.519 15 C 0.041 3.959 16 N -0.400 5.400 17 C 0.067 3.933 18 C 0.102 3.898 19 F -0.116 7.116 20 C -0.158 4.158 21 C 0.144 3.856 22 F -0.093 7.093 23 C 0.118 3.882 24 H 0.261 0.739 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.125 0.875 28 H 0.410 0.590 29 H 0.184 0.816 30 H 0.168 0.832 31 H 0.053 0.947 32 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.806 -2.640 -4.449 27.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.221 4.221 3 Si 0.902 3.098 4 H -0.221 1.221 5 H -0.219 1.219 6 H -0.214 1.214 7 C -0.433 4.433 8 H 0.103 0.897 9 N -0.349 5.349 10 C -0.039 4.039 11 C -0.008 4.008 12 N -0.339 5.339 13 C 0.350 3.650 14 O -0.394 6.394 15 C -0.098 4.098 16 N -0.110 5.110 17 C -0.096 4.096 18 C 0.080 3.920 19 F -0.094 7.094 20 C -0.185 4.185 21 C 0.121 3.879 22 F -0.071 7.071 23 C -0.010 4.010 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.143 0.857 28 H 0.246 0.754 29 H 0.201 0.799 30 H 0.186 0.814 31 H 0.071 0.929 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 25.438 -1.013 -4.018 25.773 hybrid contribution 1.338 -1.489 0.015 2.002 sum 26.776 -2.502 -4.003 27.189 Atomic orbital electron populations 1.70929 1.05301 1.29503 1.51555 1.25753 0.96415 1.01022 0.98870 0.83710 0.73778 0.75913 0.76424 1.22118 1.21900 1.21382 1.20109 0.78056 0.95981 1.49120 0.89682 1.45683 1.02134 1.01772 1.85345 1.23244 0.87495 0.94383 0.98789 1.23664 0.78240 0.99513 0.99396 1.45835 1.06847 1.65261 1.16003 1.17532 0.82859 0.78741 0.85916 1.90889 1.85185 1.47555 1.15760 1.21672 0.94856 1.02306 0.90995 1.67728 1.25750 1.09945 1.07592 1.23093 0.85736 0.99102 1.01654 1.18761 0.82713 0.99825 0.90735 1.91592 1.43115 1.93571 1.81144 1.21700 0.98674 1.03489 0.94650 1.18326 0.92733 0.96219 0.80643 1.91683 1.96248 1.87236 1.31942 1.22640 0.86899 0.93701 0.97741 0.92830 0.93328 0.92617 0.85747 0.75393 0.79870 0.81414 0.92854 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.52 13.70 55.49 0.76 -28.76 16 2 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 3 Si 1.07 27.27 25.13 -169.99 -4.27 23.00 16 4 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 5 H -0.29 -7.16 6.65 56.52 0.38 -6.79 16 6 H -0.29 -6.80 6.13 56.52 0.35 -6.45 16 7 C -0.31 -8.87 11.08 -15.06 -0.17 -9.04 16 8 H 0.09 2.57 8.05 -52.49 -0.42 2.14 16 9 N -0.62 -15.28 3.70 -184.60 -0.68 -15.97 16 10 C 0.09 1.88 5.53 -8.37 -0.05 1.84 16 11 C 0.10 1.75 4.62 -67.67 -0.31 1.43 16 12 N -0.69 -10.11 5.38 -54.42 -0.29 -10.41 16 13 C 0.57 8.59 7.80 -12.32 -0.10 8.49 16 14 O -0.52 -9.59 14.90 5.31 0.08 -9.51 16 15 C 0.04 0.49 6.75 -82.96 -0.56 -0.07 16 16 N -0.40 -3.92 9.53 -9.70 -0.09 -4.01 16 17 C 0.07 0.46 11.17 -17.47 -0.20 0.26 16 18 C 0.10 0.69 7.35 -39.12 -0.29 0.40 16 19 F -0.12 -0.75 17.28 2.25 0.04 -0.72 16 20 C -0.16 -1.15 10.14 -39.18 -0.40 -1.55 16 21 C 0.14 1.53 7.31 -38.84 -0.28 1.24 16 22 F -0.09 -1.19 15.54 2.25 0.04 -1.15 16 23 C 0.12 2.24 8.44 -8.50 -0.07 2.17 16 24 H 0.26 8.15 8.73 -40.82 -0.36 7.80 16 25 H 0.05 1.01 7.73 -51.93 -0.40 0.60 16 26 H 0.06 1.28 4.65 -51.93 -0.24 1.04 16 27 H 0.12 2.38 7.45 -51.93 -0.39 2.00 16 28 H 0.41 5.10 8.08 -40.82 -0.33 4.77 16 29 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.73 8.13 -51.93 -0.42 0.31 16 LS Contribution 287.84 15.07 4.34 4.34 Total: -1.00 -34.01 287.84 -5.31 -39.32 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -2.71 Total: -0.56 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -2.51 Total: 4.43 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.31 Total: -59.15 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.07 Total: -1.87 kcal Atomic # 14 Polarization: 27.27 SS G_CDS: -4.27 Total: 23.00 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.01 -5.31 -39.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030533992.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.380 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds