Wall clock time and date at job start Tue Mar 31 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47450 * 89.99951 * 3 2 1 5 5 H 1.48503 * 109.47360 * 209.99620 * 3 2 1 6 6 H 1.48498 * 109.47360 * 329.99798 * 3 2 1 7 7 C 1.38808 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99929 * 15.17030 * 7 2 1 9 9 N 1.36939 * 120.00203 * 195.17052 * 7 2 1 10 10 C 1.47059 * 136.05734 * 7.45960 * 9 7 2 11 11 C 1.53753 * 87.88943 * 152.96018 * 10 9 7 12 12 C 1.52998 * 114.57481 * 272.66268 * 11 10 9 13 13 N 1.46503 * 109.47469 * 268.66731 * 12 11 10 14 14 C 1.34770 * 120.00240 * 179.97438 * 13 12 11 15 15 O 1.21699 * 120.00325 * 0.02562 * 14 13 12 16 16 C 1.46672 * 120.00058 * 180.02562 * 14 13 12 17 17 C 1.37890 * 126.22375 * 179.69274 * 16 14 13 18 18 C 1.39891 * 107.09729 * 179.88672 * 17 16 14 19 19 Cl 1.73595 * 126.07796 * 180.14663 * 18 17 16 20 20 C 1.35519 * 107.84892 * 0.38593 * 18 17 16 21 21 N 1.35638 * 108.85044 * 359.75851 * 20 18 17 22 22 H 0.96998 * 125.67066 * 180.02562 * 21 20 18 23 23 C 1.47062 * 136.05593 * 187.82575 * 9 7 2 24 24 H 0.96995 * 120.00365 * 174.90835 * 1 2 3 25 25 H 1.08997 * 113.47135 * 267.69145 * 10 9 7 26 26 H 1.09007 * 113.47198 * 38.13451 * 10 9 7 27 27 H 1.09003 * 114.08984 * 139.78157 * 11 10 9 28 28 H 1.08997 * 109.47473 * 28.66981 * 12 11 10 29 29 H 1.09006 * 109.47064 * 148.67252 * 12 11 10 30 30 H 0.97003 * 119.99365 * 0.02562 * 13 12 11 31 31 H 1.08003 * 126.45195 * 0.02562 * 17 16 14 32 32 H 1.08000 * 125.57916 * 179.79013 * 20 18 17 33 33 H 1.09008 * 113.47329 * 321.86486 * 23 9 7 34 34 H 1.08996 * 113.47155 * 92.25117 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4478 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4984 -2.1213 -0.2438 9 7 3.3438 -1.2227 0.3109 10 6 4.3298 -0.2528 0.8107 11 6 5.1048 -1.4365 1.4125 12 6 4.6580 -1.8406 2.8189 13 7 5.4551 -1.1158 3.8117 14 6 5.2353 -1.3131 5.1266 15 8 4.3750 -2.0937 5.4894 16 6 6.0330 -0.5871 6.1205 17 6 5.9134 -0.6852 7.4907 18 6 6.8658 0.1737 8.0493 19 17 7.1431 0.4292 9.7438 20 6 7.5300 0.7750 7.0324 21 7 7.0329 0.3207 5.8550 22 1 7.3325 0.5906 4.9728 23 6 4.4217 -2.2228 0.2849 24 1 -0.4850 -0.8367 -0.0745 25 1 4.8718 0.2629 0.0181 26 1 3.9267 0.4295 1.5592 27 1 6.1871 -1.3577 1.3103 28 1 3.6041 -1.5952 2.9498 29 1 4.8006 -2.9131 2.9513 30 1 6.1405 -0.4933 3.5225 31 1 5.2172 -1.3096 8.0310 32 1 8.3255 1.4972 7.1416 33 1 4.0970 -3.2190 0.5854 34 1 4.9874 -2.2272 -0.6468 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031542311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:04 Heat of formation + Delta-G solvation = 64.229415 kcal Electronic energy + Delta-G solvation = -19312.421530 eV Core-core repulsion = 16081.156581 eV Total energy + Delta-G solvation = -3231.264949 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.63867 -39.46072 -38.42308 -36.61920 -34.62474 -32.44684 -31.26383 -30.08350 -28.68908 -26.09229 -25.37187 -22.96732 -21.89290 -20.89603 -20.46762 -19.73820 -18.54499 -17.45118 -16.16591 -16.04971 -15.65861 -15.15420 -14.82239 -14.58500 -14.21375 -13.85293 -13.70605 -13.42408 -13.26283 -13.15033 -12.74309 -12.08440 -11.80960 -11.69622 -11.11537 -11.07885 -10.87057 -10.51356 -10.24433 -10.05651 -9.56781 -9.22797 -9.19633 -9.03620 -8.73930 -8.54152 -7.22070 -6.32172 -3.24749 1.15728 1.92317 2.17557 2.78350 3.13658 3.25292 3.35456 3.42398 3.57817 4.56311 4.58290 4.63593 4.71207 4.87420 4.90027 5.07029 5.32180 5.40989 5.61700 5.64330 5.82877 6.06535 6.12179 6.15319 6.22619 6.28603 6.31413 6.31741 6.45220 6.78148 6.86740 7.09141 7.42523 8.11049 8.22819 8.95724 9.48782 10.33981 11.17812 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.025677 B = 0.003492 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.195634 B = 8015.632152 C = 8284.425743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.024 4.024 3 Si 1.063 2.937 4 H -0.295 1.295 5 H -0.283 1.283 6 H -0.295 1.295 7 C -0.306 4.306 8 H 0.082 0.918 9 N -0.622 5.622 10 C 0.104 3.896 11 C -0.147 4.147 12 C 0.147 3.853 13 N -0.724 5.724 14 C 0.585 3.415 15 O -0.521 6.521 16 C -0.032 4.032 17 C -0.097 4.097 18 C -0.126 4.126 19 Cl -0.049 7.049 20 C 0.038 3.962 21 N -0.531 5.531 22 H 0.424 0.576 23 C 0.127 3.873 24 H 0.262 0.738 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.392 0.608 31 H 0.158 0.842 32 H 0.181 0.819 33 H 0.049 0.951 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.550 1.885 12.864 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.223 4.223 3 Si 0.895 3.105 4 H -0.222 1.222 5 H -0.209 1.209 6 H -0.222 1.222 7 C -0.433 4.433 8 H 0.100 0.900 9 N -0.351 5.351 10 C -0.022 4.022 11 C -0.167 4.167 12 C 0.025 3.975 13 N -0.375 5.375 14 C 0.371 3.629 15 O -0.396 6.396 16 C -0.146 4.146 17 C -0.124 4.124 18 C -0.160 4.160 19 Cl -0.021 7.021 20 C -0.099 4.099 21 N -0.128 5.128 22 H 0.263 0.737 23 C 0.001 3.999 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.225 0.775 31 H 0.176 0.824 32 H 0.198 0.802 33 H 0.067 0.933 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 19.457 2.961 13.058 23.619 hybrid contribution 0.772 -1.052 -0.674 1.469 sum 20.229 1.908 12.384 23.795 Atomic orbital electron populations 1.70883 1.05433 1.29658 1.51312 1.25760 0.96520 1.00855 0.99168 0.83767 0.74501 0.75975 0.76289 1.22243 1.20935 1.22246 1.20143 0.80426 0.95985 1.46723 0.89995 1.46271 1.03563 1.07943 1.77313 1.22767 0.90234 0.93255 0.95925 1.23182 0.98312 1.00864 0.94363 1.21122 0.96296 0.95619 0.84505 1.45932 1.39764 1.46082 1.05696 1.16926 0.82701 0.81861 0.81443 1.90890 1.32690 1.36039 1.80023 1.20501 0.97919 1.01294 0.94887 1.21191 0.99700 1.00465 0.91000 1.19956 1.04097 1.06388 0.85539 1.98330 1.95908 1.96173 1.11671 1.21725 1.02074 1.02741 0.83385 1.41929 1.28743 1.33471 1.08629 0.73729 1.22323 0.89025 0.94591 0.94005 0.92755 0.93621 0.93043 0.90409 0.89457 0.91172 0.77533 0.82444 0.80227 0.93314 0.94236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.52 13.70 55.49 0.76 -28.76 16 2 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 3 Si 1.06 26.30 25.50 -169.99 -4.34 21.96 16 4 H -0.29 -7.02 6.97 56.52 0.39 -6.63 16 5 H -0.28 -6.37 5.66 56.52 0.32 -6.06 16 6 H -0.30 -7.43 7.11 56.52 0.40 -7.02 16 7 C -0.31 -8.75 11.03 -15.06 -0.17 -8.92 16 8 H 0.08 2.48 8.06 -52.48 -0.42 2.05 16 9 N -0.62 -14.76 3.46 -184.63 -0.64 -15.40 16 10 C 0.10 2.02 5.13 -8.39 -0.04 1.98 16 11 C -0.15 -2.23 4.17 -89.97 -0.37 -2.61 16 12 C 0.15 2.30 5.51 -4.04 -0.02 2.28 16 13 N -0.72 -9.13 5.55 -61.62 -0.34 -9.47 16 14 C 0.58 8.46 7.79 -12.86 -0.10 8.36 16 15 O -0.52 -9.79 16.88 5.19 0.09 -9.70 16 16 C -0.03 -0.38 7.05 -81.98 -0.58 -0.95 16 17 C -0.10 -1.15 10.65 -39.09 -0.42 -1.56 16 18 C -0.13 -1.25 6.66 -39.93 -0.27 -1.52 16 19 Cl -0.05 -0.46 29.30 -51.86 -1.52 -1.98 16 20 C 0.04 0.28 11.87 -16.84 -0.20 0.08 16 21 N -0.53 -4.01 6.00 -9.35 -0.06 -4.06 16 22 H 0.42 1.82 8.19 -40.82 -0.33 1.49 16 23 C 0.13 2.34 8.25 -8.52 -0.07 2.27 16 24 H 0.26 8.23 8.73 -40.82 -0.36 7.87 16 25 H 0.05 0.86 7.02 -51.93 -0.36 0.50 16 26 H 0.05 1.06 6.21 -51.93 -0.32 0.73 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.09 1.75 7.93 -51.93 -0.41 1.34 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.39 3.48 7.60 -40.82 -0.31 3.17 16 31 H 0.16 1.89 8.06 -52.48 -0.42 1.47 16 32 H 0.18 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.05 0.88 8.12 -51.92 -0.42 0.46 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 306.14 15.07 4.61 4.61 Total: -1.00 -35.43 306.14 -7.71 -43.14 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -3.94 Total: 1.04 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.33 Total: -1.39 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.28 Total: -57.69 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -4.34 Total: 21.96 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.52 Total: -1.98 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.43 -7.71 -43.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031542311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.367 kcal (2) G-P(sol) polarization free energy of solvation -35.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds