Wall clock time and date at job start Tue Mar 31 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48495 * 109.47363 * 240.00008 * 3 2 1 5 5 H 1.48506 * 109.46719 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47174 * 119.99835 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.08998 * 113.46839 * 92.07408 * 12 9 7 14 14 C 1.53002 * 113.46479 * 321.64192 * 12 9 7 15 15 N 1.46500 * 109.47404 * 74.50242 * 14 12 9 16 16 C 1.34773 * 120.00055 * 179.97438 * 15 14 12 17 17 O 1.21700 * 120.00076 * 0.02562 * 16 15 14 18 18 C 1.46672 * 119.99878 * 179.97438 * 16 15 14 19 19 C 1.37892 * 126.21824 * 180.02562 * 18 16 15 20 20 C 1.39888 * 107.09197 * 179.97438 * 19 18 16 21 21 Cl 1.73606 * 126.07678 * 179.97438 * 20 19 18 22 22 C 1.35517 * 107.85285 * 0.02562 * 20 19 18 23 23 N 1.35638 * 108.85076 * 359.75071 * 22 20 19 24 24 H 0.96997 * 125.67403 * 180.24658 * 23 22 20 25 25 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 26 26 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 27 27 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 28 28 H 1.09006 * 114.20377 * 272.47966 * 11 10 9 29 29 H 1.08994 * 114.39005 * 139.66791 * 11 10 9 30 30 H 1.08998 * 109.47210 * 194.50706 * 14 12 9 31 31 H 1.09006 * 109.47017 * 314.50033 * 14 12 9 32 32 H 0.96999 * 119.99715 * 359.97438 * 15 14 12 33 33 H 1.08003 * 126.46050 * 0.02562 * 19 18 16 34 34 H 1.08000 * 125.57592 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 6 1.6797 -3.8155 0.0005 13 1 1.7491 -4.2455 0.9997 14 6 2.8946 -4.1417 -0.8704 15 7 4.1144 -3.6906 -0.1960 16 6 5.3148 -3.8746 -0.7802 17 8 5.3856 -4.4151 -1.8683 18 6 6.5360 -3.4224 -0.1052 19 6 7.8237 -3.5441 -0.5829 20 6 8.6729 -2.9825 0.3764 21 17 10.4026 -2.8754 0.2733 22 6 7.9056 -2.5378 1.4011 23 7 6.6043 -2.7948 1.1178 24 1 5.8480 -2.5748 1.6839 25 1 -0.4849 0.8401 -0.0004 26 1 -0.4897 -2.9528 1.0077 27 1 -0.7251 -2.1596 -0.6083 28 1 0.3751 -4.0237 -1.7798 29 1 -0.1731 -4.9861 -0.3346 30 1 2.9464 -5.2182 -1.0333 31 1 2.8007 -3.6332 -1.8301 32 1 4.0579 -3.2594 0.6711 33 1 8.1209 -3.9885 -1.5214 34 1 8.2703 -2.0543 2.2953 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038044080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:07 Heat of formation + Delta-G solvation = 58.953485 kcal Electronic energy + Delta-G solvation = -19636.490670 eV Core-core repulsion = 16404.996940 eV Total energy + Delta-G solvation = -3231.493730 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.43183 -39.13001 -38.03966 -36.47541 -34.26210 -32.32930 -31.05182 -29.79568 -28.11685 -27.42645 -23.57064 -23.18946 -21.77903 -20.64832 -20.25006 -19.54618 -18.79606 -16.78178 -15.86428 -15.69539 -15.50704 -14.98389 -14.57925 -14.25013 -13.98541 -13.81165 -13.40514 -13.27407 -12.99036 -12.95524 -12.05102 -11.89162 -11.61762 -11.21332 -11.07980 -10.94182 -10.85113 -10.68197 -10.18172 -9.94361 -9.89916 -9.34889 -9.01591 -8.91170 -8.78764 -8.33823 -7.00701 -5.87202 -3.20506 1.36800 2.08285 2.35423 3.01444 3.28758 3.34978 3.36599 3.40043 3.48636 4.33233 4.78831 4.87518 5.06496 5.11125 5.29170 5.45716 5.50225 5.64166 5.78774 5.81066 6.00373 6.22797 6.30544 6.32411 6.49041 6.51907 6.59913 6.73549 7.07951 7.12223 7.29735 7.47863 7.70407 7.86896 8.34009 8.91504 9.59487 10.52323 11.29658 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.004651 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.582043 B = 6018.699654 C = 7248.829606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.160 4.160 12 C 0.126 3.874 13 H 0.048 0.952 14 C 0.122 3.878 15 N -0.711 5.711 16 C 0.584 3.416 17 O -0.534 6.534 18 C -0.029 4.029 19 C -0.101 4.101 20 C -0.128 4.128 21 Cl -0.053 7.053 22 C 0.038 3.962 23 N -0.528 5.528 24 H 0.427 0.573 25 H 0.255 0.745 26 H 0.025 0.975 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.397 0.603 33 H 0.156 0.844 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.929 -7.408 4.276 14.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.201 4.201 3 Si 0.738 3.262 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.346 4.346 8 H 0.095 0.905 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.199 4.199 12 C 0.018 3.982 13 H 0.065 0.935 14 C -0.002 4.002 15 N -0.360 5.360 16 C 0.370 3.630 17 O -0.411 6.411 18 C -0.143 4.143 19 C -0.128 4.128 20 C -0.161 4.161 21 Cl -0.024 7.024 22 C -0.100 4.100 23 N -0.124 5.124 24 H 0.266 0.734 25 H 0.065 0.935 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.231 0.769 33 H 0.174 0.826 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 11.940 -7.381 3.533 14.475 hybrid contribution 0.301 1.417 0.921 1.716 sum 12.240 -5.964 4.454 14.326 Atomic orbital electron populations 1.69810 1.04978 1.25539 1.55852 1.24771 0.95633 0.97419 1.02281 0.86280 0.78595 0.83449 0.77899 1.21012 1.21399 1.21300 1.18727 0.89794 0.81403 1.44703 0.90526 1.45669 1.02667 0.98475 1.85934 1.22030 0.88662 0.90198 0.96519 1.23651 0.96705 0.99065 1.00497 1.22429 0.92106 0.87833 0.95814 0.93498 1.21885 0.82503 0.98469 0.97378 1.45852 1.06132 1.60827 1.23219 1.16958 0.81832 0.79272 0.84955 1.90830 1.86413 1.43906 1.19984 1.20545 0.95634 1.09043 0.89112 1.21123 0.89199 1.02408 1.00042 1.19920 0.85248 1.12163 0.98747 1.98318 1.08237 1.97606 1.98264 1.21717 0.82402 1.05054 1.00840 1.41997 1.08180 1.45303 1.16952 0.73440 0.93503 0.95722 0.90919 0.90115 0.92250 0.91876 0.90713 0.76929 0.82611 0.80330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.12 11.51 55.49 0.64 -25.48 16 2 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 3 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.22 -5.62 10.55 -15.06 -0.16 -5.78 16 8 H 0.08 1.87 7.50 -52.49 -0.39 1.47 16 9 N -0.60 -13.98 3.65 -177.01 -0.65 -14.62 16 10 C 0.15 3.33 7.40 -8.51 -0.06 3.27 16 11 C -0.16 -2.78 8.03 -26.23 -0.21 -2.99 16 12 C 0.13 2.29 4.10 -72.41 -0.30 1.99 16 13 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 14 C 0.12 2.10 5.52 -4.04 -0.02 2.07 16 15 N -0.71 -11.39 5.33 -61.62 -0.33 -11.72 16 16 C 0.58 9.79 7.79 -12.86 -0.10 9.69 16 17 O -0.53 -10.63 16.88 5.19 0.09 -10.54 16 18 C -0.03 -0.42 7.05 -81.98 -0.58 -0.99 16 19 C -0.10 -1.39 10.65 -39.09 -0.42 -1.81 16 20 C -0.13 -1.53 6.66 -39.94 -0.27 -1.79 16 21 Cl -0.05 -0.57 29.30 -51.86 -1.52 -2.09 16 22 C 0.04 0.38 11.87 -16.84 -0.20 0.18 16 23 N -0.53 -5.79 6.00 -9.35 -0.06 -5.85 16 24 H 0.43 3.78 8.19 -40.82 -0.33 3.45 16 25 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.80 7.12 -51.93 -0.37 1.43 16 28 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.40 5.80 7.49 -40.82 -0.31 5.49 16 33 H 0.16 2.10 8.06 -52.48 -0.42 1.68 16 34 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -31.43 312.22 -8.47 -39.90 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -3.92 Total: 5.73 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.41 Total: 3.64 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.39 Total: -57.67 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.52 Total: -2.09 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.43 -8.47 -39.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038044080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.856 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds