Wall clock time and date at job start Tue Mar 31 2020 06:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00442 * 2 1 4 4 H 1.48508 * 109.46943 * 274.98828 * 3 2 1 5 5 H 1.48498 * 109.46995 * 34.98849 * 3 2 1 6 6 H 1.48493 * 109.47191 * 154.99111 * 3 2 1 7 7 C 1.38814 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00076 * 185.03874 * 7 2 1 9 9 N 1.36936 * 119.99955 * 5.03689 * 7 2 1 10 10 C 1.47063 * 136.05985 * 353.17158 * 9 7 2 11 11 C 1.53492 * 87.98961 * 207.38373 * 10 9 7 12 12 C 1.47065 * 136.05908 * 173.54887 * 9 7 2 13 13 H 1.08997 * 113.47125 * 267.40168 * 12 9 7 14 14 C 1.53001 * 113.46539 * 37.83757 * 12 9 7 15 15 N 1.46502 * 109.47218 * 285.49700 * 14 12 9 16 16 C 1.34779 * 119.99973 * 180.02562 * 15 14 12 17 17 O 1.21715 * 119.99874 * 359.97438 * 16 15 14 18 18 C 1.46546 * 120.00122 * 179.97438 * 16 15 14 19 19 C 1.37932 * 126.23717 * 179.68477 * 18 16 15 20 20 C 1.39745 * 107.12640 * 179.88334 * 19 18 16 21 21 C 1.35664 * 107.88296 * 0.38448 * 20 19 18 22 22 Cl 1.73602 * 125.57449 * 179.75927 * 21 20 19 23 23 N 1.35576 * 108.85046 * 359.76165 * 21 20 19 24 24 H 0.96997 * 125.69687 * 180.02562 * 23 21 20 25 25 H 0.97002 * 119.99494 * 359.97438 * 1 2 3 26 26 H 1.09002 * 113.46631 * 322.16821 * 10 9 7 27 27 H 1.09001 * 113.46614 * 92.60087 * 10 9 7 28 28 H 1.08999 * 114.20511 * 220.34593 * 11 10 9 29 29 H 1.08991 * 114.38656 * 87.53162 * 11 10 9 30 30 H 1.08997 * 109.47331 * 45.49555 * 14 12 9 31 31 H 1.09007 * 109.47434 * 165.49795 * 14 12 9 32 32 H 0.96995 * 120.00335 * 0.02562 * 15 14 12 33 33 H 1.08008 * 126.43382 * 0.02887 * 19 18 16 34 34 H 1.08000 * 126.06058 * 180.15071 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3949 5 1 1.5045 2.6199 0.8028 6 1 3.5966 1.4119 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0816 9 7 1.3294 -2.3857 -0.1052 10 6 -0.0820 -2.7987 -0.1095 11 6 0.3696 -4.1563 0.4463 12 6 1.6881 -3.8040 -0.2560 13 1 1.7286 -4.1335 -1.2942 14 6 2.9300 -4.2065 0.5419 15 7 4.1272 -3.6838 -0.1211 16 6 5.3455 -3.9167 0.4061 17 8 5.4510 -4.5610 1.4333 18 6 6.5432 -3.3943 -0.2575 19 6 7.8454 -3.5496 0.1699 20 6 8.6632 -2.8978 -0.7570 21 6 7.8638 -2.3586 -1.7113 22 17 8.4050 -1.4413 -3.0822 23 7 6.5730 -2.6532 -1.4192 24 1 5.7998 -2.3873 -1.9409 25 1 -0.4849 0.8401 0.0004 26 1 -0.7026 -2.2306 0.5835 27 1 -0.5132 -2.8604 -1.1087 28 1 -0.1516 -5.0112 0.0156 29 1 0.4391 -4.1970 1.5332 30 1 2.8637 -3.7953 1.5492 31 1 2.9902 -5.2935 0.5965 32 1 4.0431 -3.1700 -0.9396 33 1 8.1718 -4.0779 1.0537 34 1 9.7405 -2.8315 -0.7183 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038668658.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:10 Heat of formation + Delta-G solvation = 58.996935 kcal Electronic energy + Delta-G solvation = -19724.454400 eV Core-core repulsion = 16492.962554 eV Total energy + Delta-G solvation = -3231.491846 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40299 -39.13106 -38.04206 -36.87431 -34.26835 -32.33062 -31.36499 -29.62071 -28.09900 -27.37424 -23.56297 -23.09099 -21.73758 -20.70850 -20.26165 -19.55942 -18.82601 -16.79459 -16.10821 -15.69420 -15.54800 -15.05051 -14.35163 -14.21291 -14.09403 -13.84677 -13.33884 -13.12958 -13.05570 -12.75334 -12.06316 -11.82932 -11.63887 -11.45626 -11.18387 -11.07709 -10.86960 -10.64710 -10.18077 -9.94756 -9.89375 -9.32870 -9.28251 -8.92021 -8.78192 -8.25088 -6.98598 -5.88307 -3.20475 1.29672 1.45690 2.44268 3.08791 3.29589 3.34005 3.36859 3.38271 3.48771 4.34144 4.86528 5.05242 5.09157 5.15287 5.30454 5.47375 5.61477 5.73481 5.81686 5.92692 6.00757 6.22259 6.31754 6.36605 6.51155 6.58582 6.61776 6.73990 6.97774 7.14330 7.29459 7.48643 7.70468 7.86851 8.33539 8.92177 9.59787 10.53520 11.29258 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.005532 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.981595 B = 5059.865438 C = 6421.995450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.003 4.003 3 Si 0.904 3.096 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.154 3.846 11 C -0.161 4.161 12 C 0.125 3.875 13 H 0.048 0.952 14 C 0.122 3.878 15 N -0.711 5.711 16 C 0.584 3.416 17 O -0.534 6.534 18 C -0.024 4.024 19 C -0.106 4.106 20 C -0.179 4.179 21 C 0.084 3.916 22 Cl -0.019 7.019 23 N -0.529 5.529 24 H 0.423 0.577 25 H 0.254 0.746 26 H 0.068 0.932 27 H 0.027 0.973 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.397 0.603 33 H 0.157 0.843 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.169 -7.088 -4.778 14.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.201 4.201 3 Si 0.734 3.266 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.347 4.347 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.029 3.971 11 C -0.200 4.200 12 C 0.017 3.983 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.361 5.361 16 C 0.371 3.629 17 O -0.411 6.411 18 C -0.138 4.138 19 C -0.132 4.132 20 C -0.205 4.205 21 C -0.059 4.059 22 Cl 0.010 6.990 23 N -0.129 5.129 24 H 0.262 0.738 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.231 0.769 33 H 0.175 0.825 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 12.121 -7.060 -4.188 14.639 hybrid contribution 0.048 1.632 -1.071 1.953 sum 12.169 -5.428 -5.260 14.325 Atomic orbital electron populations 1.69843 1.05022 1.25450 1.55630 1.24810 0.95631 0.97438 1.02173 0.86220 0.78910 0.83886 0.77542 1.21587 1.21512 1.20543 1.18806 0.90429 0.81444 1.44020 0.90348 1.45634 1.02631 0.99894 1.84598 1.21974 0.88548 0.89097 0.97519 1.23672 0.96873 0.98986 1.00433 1.22438 0.91934 0.87711 0.96186 0.93468 1.21885 0.83043 0.97584 0.97744 1.45888 1.05991 1.55394 1.28784 1.16939 0.81759 0.80108 0.84140 1.90832 1.86119 1.40844 1.23323 1.20670 0.96422 1.05809 0.90891 1.21263 0.89676 1.01868 1.00370 1.20643 0.99745 1.04802 0.95267 1.21014 0.85056 1.04864 0.94967 1.98401 1.87779 1.71905 1.40951 1.42094 1.07228 1.42078 1.21517 0.73831 0.93552 0.91341 0.95510 0.92262 0.90121 0.90743 0.91840 0.76870 0.82516 0.82917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.28 11.63 55.49 0.65 -25.64 16 2 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 3 Si 0.90 21.55 29.56 -169.99 -5.02 16.52 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.22 -5.72 10.54 -15.06 -0.16 -5.88 16 8 H 0.08 1.97 7.61 -52.49 -0.40 1.57 16 9 N -0.60 -14.13 3.65 -177.04 -0.65 -14.78 16 10 C 0.15 3.42 7.31 -8.53 -0.06 3.36 16 11 C -0.16 -2.80 8.03 -26.22 -0.21 -3.01 16 12 C 0.13 2.30 4.10 -72.41 -0.30 2.00 16 13 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 14 C 0.12 2.11 5.52 -4.04 -0.02 2.09 16 15 N -0.71 -11.65 5.33 -61.65 -0.33 -11.98 16 16 C 0.58 9.88 7.78 -12.91 -0.10 9.77 16 17 O -0.53 -10.52 16.88 5.18 0.09 -10.44 16 18 C -0.02 -0.35 7.06 -81.93 -0.58 -0.92 16 19 C -0.11 -1.38 10.65 -39.13 -0.42 -1.80 16 20 C -0.18 -2.04 10.78 -39.94 -0.43 -2.47 16 21 C 0.08 0.99 7.74 -16.82 -0.13 0.86 16 22 Cl -0.02 -0.19 29.30 -51.86 -1.52 -1.71 16 23 N -0.53 -6.59 6.00 -6.54 -0.04 -6.63 16 24 H 0.42 4.65 8.19 -40.82 -0.33 4.32 16 25 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.07 1.70 7.32 -51.93 -0.38 1.32 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 30 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.40 6.09 7.60 -40.82 -0.31 5.78 16 33 H 0.16 1.88 8.06 -52.48 -0.42 1.46 16 34 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -30.96 312.65 -8.56 -39.52 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.94 Total: 6.60 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -2.50 Total: 3.82 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.37 Total: -59.03 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.52 Total: -1.71 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.96 -8.56 -39.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038668658.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.514 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds