Wall clock time and date at job start Tue Mar 31 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00048 * 2 1 4 4 H 1.48506 * 109.47027 * 269.99943 * 3 2 1 5 5 H 1.48495 * 109.47079 * 29.99792 * 3 2 1 6 6 H 1.48506 * 109.47168 * 150.00039 * 3 2 1 7 7 C 1.38814 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00453 * 359.97438 * 7 2 1 10 10 C 1.47586 * 134.49214 * 0.02562 * 9 7 2 11 11 C 1.53950 * 86.11814 * 155.35771 * 10 9 7 12 12 C 1.47585 * 134.49495 * 179.97438 * 9 7 2 13 13 H 1.09002 * 113.86542 * 90.33260 * 12 9 7 14 14 C 1.52997 * 113.77049 * 318.94949 * 12 9 7 15 15 N 1.46505 * 109.47212 * 78.49995 * 14 12 9 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 12 17 17 O 1.21707 * 120.00419 * 0.02562 * 16 15 14 18 18 C 1.46553 * 119.99658 * 180.02562 * 16 15 14 19 19 C 1.37930 * 126.23251 * 180.02562 * 18 16 15 20 20 C 1.39749 * 107.12358 * 179.97438 * 19 18 16 21 21 C 1.35664 * 107.88432 * 359.97438 * 20 19 18 22 22 Cl 1.73603 * 125.57373 * 180.02562 * 21 20 19 23 23 N 1.35571 * 108.84862 * 359.77092 * 21 20 19 24 24 H 0.97002 * 125.69894 * 180.22840 * 23 21 20 25 25 H 0.97001 * 120.00214 * 0.02562 * 1 2 3 26 26 H 1.08997 * 113.77110 * 41.05454 * 10 9 7 27 27 H 1.08997 * 113.86718 * 269.66802 * 10 9 7 28 28 H 1.09005 * 113.73853 * 269.26246 * 11 10 9 29 29 H 1.08994 * 113.83895 * 137.96738 * 11 10 9 30 30 H 1.09002 * 109.47153 * 318.49988 * 14 12 9 31 31 H 1.09001 * 109.46832 * 198.50179 * 14 12 9 32 32 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 33 33 H 1.07998 * 126.44048 * 359.96347 * 19 18 16 34 34 H 1.07998 * 126.06040 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1033 -2.7574 0.0019 11 6 0.3469 -4.0836 -0.6373 12 6 1.7201 -3.8102 0.0019 13 1 1.8332 -4.2363 0.9988 14 6 2.9017 -4.1226 -0.9184 15 7 4.1495 -3.7190 -0.2652 16 6 5.3280 -3.9004 -0.8933 17 8 5.3558 -4.3989 -2.0032 18 6 6.5762 -3.4972 -0.2397 19 6 7.8469 -3.6220 -0.7614 20 6 8.7346 -3.1146 0.1913 21 6 8.0072 -2.6962 1.2573 22 17 8.6523 -1.9860 2.7041 23 7 6.6937 -2.9182 1.0056 24 1 5.9593 -2.7073 1.6032 25 1 -0.4850 0.8400 -0.0004 26 1 -0.7169 -2.1397 -0.6538 27 1 -0.5289 -2.8725 0.9988 28 1 0.3590 -4.0636 -1.7271 29 1 -0.1585 -4.9610 -0.2340 30 1 2.7880 -3.5754 -1.8542 31 1 2.9289 -5.1927 -1.1242 32 1 4.1273 -3.3221 0.6195 33 1 8.1071 -4.0344 -1.7250 34 1 9.8092 -3.0645 0.0960 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038668659.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:13 Heat of formation + Delta-G solvation = 55.953895 kcal Electronic energy + Delta-G solvation = -19683.858823 eV Core-core repulsion = 16452.235021 eV Total energy + Delta-G solvation = -3231.623802 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.41606 -39.08538 -37.89196 -36.88701 -34.28225 -32.27667 -31.37728 -29.63325 -28.02867 -27.41248 -23.44305 -23.17423 -21.81847 -20.72819 -20.27747 -19.50920 -18.76152 -16.80383 -16.11167 -15.71114 -15.54249 -15.03713 -14.37016 -14.22584 -14.09999 -13.82534 -13.36610 -13.14055 -13.06502 -12.76392 -12.05549 -11.82176 -11.50179 -11.46960 -11.19793 -11.08886 -10.81346 -10.62022 -10.19795 -9.89615 -9.82052 -9.48781 -9.29487 -8.87875 -8.81480 -8.26440 -6.97483 -5.84316 -3.17277 1.28437 1.44302 2.43157 3.07220 3.31276 3.33176 3.37406 3.39492 3.47642 4.35449 4.84608 5.03295 5.05394 5.13759 5.31803 5.54209 5.60749 5.72351 5.82696 5.91679 5.99847 6.22701 6.33076 6.35486 6.53606 6.57933 6.60874 6.73940 6.96278 7.16919 7.33371 7.51897 7.68761 7.90535 8.32348 8.95803 9.63090 10.51233 11.32171 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.005322 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.660411 B = 5259.667983 C = 6507.305688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.124 3.876 13 H 0.049 0.951 14 C 0.123 3.877 15 N -0.712 5.712 16 C 0.585 3.415 17 O -0.533 6.533 18 C -0.024 4.024 19 C -0.105 4.105 20 C -0.179 4.179 21 C 0.084 3.916 22 Cl -0.019 7.019 23 N -0.530 5.530 24 H 0.422 0.578 25 H 0.254 0.746 26 H 0.074 0.926 27 H 0.027 0.973 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.396 0.604 33 H 0.157 0.843 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.537 -7.958 3.794 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.194 4.194 12 C 0.017 3.983 13 H 0.066 0.934 14 C -0.001 4.001 15 N -0.361 5.361 16 C 0.371 3.629 17 O -0.410 6.410 18 C -0.138 4.138 19 C -0.132 4.132 20 C -0.204 4.204 21 C -0.059 4.059 22 Cl 0.010 6.990 23 N -0.129 5.129 24 H 0.261 0.739 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.230 0.770 33 H 0.175 0.825 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 12.434 -7.866 3.199 15.057 hybrid contribution 0.164 1.512 1.173 1.921 sum 12.598 -6.354 4.372 14.772 Atomic orbital electron populations 1.69813 1.04953 1.25360 1.56254 1.24753 0.95617 0.97406 1.02374 0.86214 0.78493 0.83794 0.77764 1.21445 1.21586 1.20878 1.18875 0.89986 0.81963 1.44229 0.90634 1.46055 1.02331 0.98466 1.86016 1.22200 0.87880 0.89619 0.96944 1.23762 0.95938 0.99005 1.00661 1.22514 0.92440 0.87769 0.95620 0.93367 1.21844 0.81742 0.99007 0.97493 1.45885 1.06330 1.62872 1.21022 1.16929 0.81863 0.78934 0.85192 1.90833 1.86558 1.44953 1.18656 1.20675 0.96328 1.09767 0.87033 1.21267 0.89466 1.02264 1.00156 1.20647 1.00020 1.07169 0.92604 1.21013 0.84430 1.08029 0.92438 1.98402 1.83722 1.82136 1.34777 1.42088 1.06906 1.47931 1.16018 0.73869 0.93591 0.90776 0.95542 0.90405 0.92721 0.90555 0.91749 0.77005 0.82502 0.82909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.44 11.38 55.49 0.63 -25.81 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 3 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.22 -5.83 10.51 -15.06 -0.16 -5.99 16 8 H 0.08 1.90 7.80 -52.48 -0.41 1.49 16 9 N -0.60 -14.19 3.58 -170.73 -0.61 -14.80 16 10 C 0.16 3.54 7.52 -2.97 -0.02 3.52 16 11 C -0.15 -2.72 7.86 -25.82 -0.20 -2.92 16 12 C 0.12 2.28 4.33 -66.88 -0.29 1.99 16 13 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 14 C 0.12 2.14 5.53 -4.04 -0.02 2.11 16 15 N -0.71 -11.54 5.52 -61.66 -0.34 -11.88 16 16 C 0.58 9.80 7.78 -12.91 -0.10 9.70 16 17 O -0.53 -10.47 16.88 5.18 0.09 -10.38 16 18 C -0.02 -0.34 7.06 -81.93 -0.58 -0.92 16 19 C -0.11 -1.36 10.65 -39.13 -0.42 -1.78 16 20 C -0.18 -2.02 10.78 -39.94 -0.43 -2.45 16 21 C 0.08 0.97 7.74 -16.82 -0.13 0.84 16 22 Cl -0.02 -0.19 29.30 -51.86 -1.52 -1.71 16 23 N -0.53 -6.48 6.00 -6.54 -0.04 -6.52 16 24 H 0.42 4.53 8.19 -40.82 -0.33 4.20 16 25 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 26 H 0.07 1.85 7.15 -51.93 -0.37 1.48 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.40 5.93 7.60 -40.82 -0.31 5.62 16 33 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 34 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 312.78 15.07 4.71 4.71 Total: -1.00 -31.08 312.78 -8.49 -39.57 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -3.94 Total: 6.16 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -2.45 Total: 3.89 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.36 Total: -59.01 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.52 Total: -1.71 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.08 -8.49 -39.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038668659.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.525 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds