Wall clock time and date at job start Tue Mar 31 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38243 * 119.97819 * 2 1 4 4 C 1.38192 * 120.03569 * 179.97438 * 3 2 1 5 5 C 1.38482 * 120.00199 * 359.97438 * 4 3 2 6 6 F 1.35095 * 120.01989 * 180.02562 * 5 4 3 7 7 C 1.38424 * 119.96207 * 0.02567 * 5 4 3 8 8 C 1.50693 * 120.01992 * 179.97438 * 7 5 4 9 9 N 1.46903 * 109.47157 * 90.00283 * 8 7 5 10 10 C 1.47481 * 111.00018 * 265.97111 * 9 8 7 11 11 C 1.53503 * 87.93408 * 221.29309 * 10 9 8 12 12 C 1.50706 * 114.34355 * 139.68249 * 11 10 9 13 13 H 1.08000 * 119.99915 * 266.07774 * 12 11 10 14 14 C 1.37870 * 119.99817 * 86.08020 * 12 11 10 15 15 N 1.31517 * 120.00432 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99911 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47114 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47209 * 119.99880 * 16 14 12 19 19 H 1.48503 * 109.47070 * 239.99438 * 16 14 12 20 20 C 1.47477 * 111.00281 * 170.00286 * 9 8 7 21 21 C 1.38339 * 119.97952 * 179.72116 * 2 1 3 22 22 Cl 1.73599 * 120.00143 * 0.02562 * 21 2 1 23 23 H 1.09002 * 109.47152 * 90.00108 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00208 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00189 * 1 2 3 26 26 H 1.07997 * 119.98368 * 359.97416 * 3 2 1 27 27 H 1.08000 * 119.99718 * 180.02562 * 4 3 2 28 28 H 1.09006 * 109.47511 * 210.00036 * 8 7 5 29 29 H 1.09006 * 109.47569 * 330.00169 * 8 7 5 30 30 H 1.09006 * 113.47516 * 336.06514 * 10 9 8 31 31 H 1.09006 * 113.47965 * 106.52530 * 10 9 8 32 32 H 1.08996 * 114.17393 * 272.37714 * 11 10 9 33 33 H 0.96997 * 120.00621 * 180.02562 * 15 14 12 34 34 H 1.09003 * 113.47375 * 253.47019 * 20 9 8 35 35 H 1.08996 * 113.47828 * 23.93126 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1975 0.0000 4 6 3.5797 1.1989 0.0005 5 6 4.2734 0.0003 0.0016 6 9 5.6243 0.0012 0.0027 7 6 3.5817 -1.1987 0.0016 8 6 4.3352 -2.5038 0.0022 9 7 4.5795 -2.9276 1.3874 10 6 5.9024 -2.4723 1.8539 11 6 6.0758 -3.8422 2.5243 12 6 7.4607 -4.4235 2.4009 13 1 7.6909 -5.1038 1.5943 14 6 8.4339 -4.0867 3.3176 15 7 8.1537 -3.2579 4.2996 16 14 10.1508 -4.8066 3.1642 17 1 10.2074 -5.7041 1.9825 18 1 11.1355 -3.7073 2.9991 19 1 10.4742 -5.5809 4.3894 20 6 5.0998 -4.3067 1.4343 21 6 2.1983 -1.1983 0.0058 22 17 1.3298 -2.7014 0.0125 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.6572 2.1324 -0.0004 27 1 4.1187 2.1347 0.0010 28 1 3.7464 -3.2636 -0.5117 29 1 5.2879 -2.3736 -0.5113 30 1 6.6099 -2.2922 1.0445 31 1 5.8521 -1.6454 2.5624 32 1 5.6743 -3.8980 3.5361 33 1 8.8384 -3.0207 4.9444 34 1 4.3691 -5.0346 1.7871 35 1 5.5930 -4.6163 0.5129 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138023137.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:38 Heat of formation + Delta-G solvation = 1.845998 kcal Electronic energy + Delta-G solvation = -19863.572070 eV Core-core repulsion = 16609.682012 eV Total energy + Delta-G solvation = -3253.890058 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.74777 -39.64478 -38.59828 -36.37984 -33.50424 -32.43889 -31.66845 -28.68032 -26.72462 -25.68095 -24.74006 -23.14639 -22.15857 -20.51785 -18.60757 -17.64666 -16.93736 -16.57141 -15.65098 -15.26374 -14.74100 -14.59552 -14.38438 -14.13820 -13.84584 -13.83038 -13.63943 -13.06506 -12.35125 -12.20446 -12.01698 -11.90197 -11.70962 -11.41454 -11.24489 -11.07754 -10.96106 -10.74040 -10.49994 -10.20956 -9.77037 -9.34830 -8.92761 -8.70121 -8.49239 -8.39420 -7.99173 -6.03200 -4.07673 0.98971 1.06303 2.13276 3.29420 3.36548 3.37748 3.41264 4.30230 4.42090 4.55890 4.64360 4.74735 5.02450 5.16419 5.24922 5.34429 5.41346 5.45209 5.56294 5.70243 5.87880 6.00279 6.04161 6.06303 6.17299 6.24075 6.36504 6.52066 6.70109 6.72058 6.75131 7.17643 7.19802 7.74940 7.92322 8.07043 8.39529 8.95673 9.57319 11.06491 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.026615 B = 0.004571 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.779633 B = 6123.674727 C = 6777.876561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 C -0.089 4.089 4 C -0.148 4.148 5 C 0.114 3.886 6 F -0.127 7.127 7 C -0.083 4.083 8 C 0.052 3.948 9 N -0.473 5.473 10 C 0.007 3.993 11 C 0.041 3.959 12 C -0.515 4.515 13 H 0.058 0.942 14 C 0.067 3.933 15 N -0.886 5.886 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.002 4.002 21 C 0.003 3.997 22 Cl -0.051 7.051 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.138 0.862 27 H 0.139 0.861 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.081 8.227 -10.181 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.094 4.094 3 C -0.108 4.108 4 C -0.167 4.167 5 C 0.094 3.906 6 F -0.105 7.105 7 C -0.085 4.085 8 C -0.077 4.077 9 N -0.196 5.196 10 C -0.121 4.121 11 C 0.022 3.978 12 C -0.553 4.553 13 H 0.076 0.924 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.131 4.131 21 C -0.025 4.025 22 Cl -0.022 7.022 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.156 0.844 27 H 0.157 0.843 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.652 8.358 -9.689 19.453 hybrid contribution 1.933 -0.465 -0.578 2.070 sum -12.719 7.893 -10.267 18.152 Atomic orbital electron populations 1.20831 0.90032 1.03573 1.02732 1.19757 0.96935 0.91207 1.01510 1.20731 0.92931 0.97346 0.99788 1.21179 0.94959 0.97139 1.03452 1.17372 0.77441 0.93382 1.02439 1.91550 1.28170 1.97216 1.93557 1.19727 0.92405 0.95465 1.00918 1.21609 0.98760 0.92504 0.94784 1.68948 1.29179 1.06790 1.14646 1.24134 0.86960 1.02005 0.99047 1.20097 0.93476 0.90292 0.93893 1.21063 0.94723 1.27736 1.11822 0.92366 1.25013 0.98833 0.94817 0.94906 1.69980 1.33769 1.33860 1.14697 0.86570 0.84553 0.79022 0.78060 1.19715 1.20995 1.20916 1.24000 0.97741 0.90638 1.00721 1.20339 0.90923 0.87277 1.03937 1.98354 1.75597 1.31688 1.96550 0.90804 0.91096 0.90710 0.84438 0.84338 0.89934 0.92622 0.92627 0.92044 0.91800 0.92937 0.91843 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.62 36.01 0.35 -0.67 16 2 C -0.09 -1.09 5.88 -104.58 -0.62 -1.71 16 3 C -0.09 -0.95 9.70 -39.60 -0.38 -1.34 16 4 C -0.15 -1.83 10.03 -39.51 -0.40 -2.23 16 5 C 0.11 1.79 7.24 -39.42 -0.29 1.51 16 6 F -0.13 -2.23 16.14 2.25 0.04 -2.19 16 7 C -0.08 -1.35 5.47 -104.52 -0.57 -1.92 16 8 C 0.05 0.92 4.36 -4.98 -0.02 0.90 16 9 N -0.47 -9.87 6.32 -246.12 -1.55 -11.42 16 10 C 0.01 0.17 6.95 -7.56 -0.05 0.12 16 11 C 0.04 1.06 3.76 -91.24 -0.34 0.72 16 12 C -0.52 -14.20 8.83 -34.44 -0.30 -14.50 16 13 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 14 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 15 N -0.89 -25.92 13.26 55.43 0.74 -25.18 16 16 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C 0.00 -0.05 7.25 -7.56 -0.05 -0.11 16 21 C 0.00 0.04 6.31 -39.51 -0.25 -0.21 16 22 Cl -0.05 -0.70 25.63 -51.86 -1.33 -2.03 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 25 H 0.07 0.70 6.89 -51.93 -0.36 0.34 16 26 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 27 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 28 H 0.08 1.37 6.85 -51.93 -0.36 1.01 16 29 H 0.06 1.03 6.80 -51.93 -0.35 0.67 16 30 H 0.06 1.35 7.38 -51.93 -0.38 0.96 16 31 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.06 1.79 8.11 -51.93 -0.42 1.37 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.05 1.13 7.87 -51.93 -0.41 0.73 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -29.48 311.71 -9.82 -39.30 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -4.36 Total: -1.78 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -3.03 Total: -17.66 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.82 Total: -36.60 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.33 Total: -2.03 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.48 -9.82 -39.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138023137.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.144 kcal (2) G-P(sol) polarization free energy of solvation -29.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds