Wall clock time and date at job start Tue Mar 31 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46901 * 110.99746 * 2 1 4 4 C 1.50700 * 109.47327 * 66.04708 * 3 2 1 5 5 H 1.08006 * 120.00051 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00184 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00072 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99646 * 179.97438 * 6 4 3 9 9 H 1.48488 * 109.47454 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46866 * 120.00190 * 8 6 4 11 11 H 1.48502 * 109.46932 * 239.99783 * 8 6 4 12 12 C 1.46902 * 111.00304 * 236.05034 * 2 1 3 13 13 C 1.50706 * 109.46577 * 293.95012 * 12 2 1 14 14 C 1.38279 * 119.93254 * 104.72391 * 13 12 2 15 15 C 1.38498 * 120.04472 * 179.78437 * 14 13 12 16 16 C 1.39307 * 119.84732 * 0.49167 * 15 14 13 17 17 C 1.38504 * 119.83767 * 359.74137 * 16 15 14 18 18 C 1.38311 * 119.93694 * 284.99872 * 13 12 2 19 19 Cl 1.73600 * 119.94147 * 0.02562 * 18 13 12 20 20 O 1.36499 * 108.63755 * 179.72200 * 16 15 14 21 21 C 1.43985 * 105.48760 * 17.28491 * 20 16 15 22 22 O 1.36523 * 131.52583 * 180.14104 * 15 14 13 23 23 H 1.09003 * 109.47237 * 183.95504 * 1 2 3 24 24 H 1.08998 * 109.47394 * 303.94903 * 1 2 3 25 25 H 1.09003 * 109.47554 * 63.95496 * 1 2 3 26 26 H 1.09000 * 109.47307 * 186.04517 * 3 2 1 27 27 H 1.08997 * 109.47179 * 306.04929 * 3 2 1 28 28 H 0.97000 * 119.99883 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46894 * 173.95246 * 12 2 1 30 30 H 1.09000 * 109.47263 * 53.94812 * 12 2 1 31 31 H 1.08004 * 119.97902 * 359.97438 * 14 13 12 32 32 H 1.08004 * 119.98705 * 180.02562 * 17 16 15 33 33 H 1.08997 * 110.57469 * 91.42924 * 21 20 16 34 34 H 1.09001 * 110.57359 * 214.29871 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0489 6 6 2.0275 3.3492 1.5289 7 7 2.7126 4.0016 0.6154 8 14 1.5824 4.1869 3.1382 9 1 0.8144 3.2446 3.9909 10 1 2.8239 4.5935 3.8444 11 1 0.7558 5.3885 2.8586 12 6 1.9954 -0.7659 -1.1376 13 6 1.6369 -2.2204 -0.9728 14 6 0.6254 -2.7726 -1.7370 15 6 0.2970 -4.1101 -1.5906 16 6 0.9811 -4.8947 -0.6649 17 6 1.9902 -4.3346 0.1011 18 6 2.3165 -2.9989 -0.0536 19 17 3.5804 -2.2987 0.9088 20 8 0.4732 -6.1609 -0.7062 21 6 -0.2472 -6.2458 -1.9500 22 8 -0.6395 -4.8853 -2.2118 23 1 -0.3634 -1.0252 0.0709 24 1 -0.3634 0.5739 0.8525 25 1 -0.3634 0.4512 -0.9233 26 1 3.0796 1.3445 -0.1082 27 1 1.5609 1.9274 -0.8308 28 1 2.9877 4.9175 0.7777 29 1 3.0797 -0.6609 -1.1756 30 1 1.5611 -0.3872 -2.0628 31 1 0.0930 -2.1612 -2.4507 32 1 2.5224 -4.9408 0.8192 33 1 0.4012 -6.6167 -2.7437 34 1 -1.1247 -6.8833 -1.8417 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138238463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:09 Heat of formation + Delta-G solvation = -32.689375 kcal Electronic energy + Delta-G solvation = -19774.552090 eV Core-core repulsion = 16506.791676 eV Total energy + Delta-G solvation = -3267.760414 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.28686 -38.68914 -36.46343 -36.22018 -35.82816 -32.64294 -31.03407 -30.11953 -27.25931 -26.81103 -25.64724 -23.90739 -23.05715 -21.89474 -20.27720 -18.13660 -17.66530 -17.51941 -16.52082 -16.12961 -14.98927 -14.94122 -14.66313 -14.40148 -14.09068 -14.01499 -13.62560 -13.19945 -13.14299 -13.04302 -12.08093 -11.97919 -11.91270 -11.41928 -11.36127 -11.07835 -10.87238 -10.68184 -10.51654 -10.45617 -10.26324 -9.84460 -9.20079 -8.86503 -8.41957 -7.99833 -7.24376 -6.00792 -4.01258 0.97085 1.07797 2.19874 2.75971 3.29564 3.32755 3.40053 3.41299 3.46034 4.34396 4.44539 4.45424 4.66484 4.87193 4.91471 4.99436 5.18694 5.35320 5.38776 5.71499 5.75560 5.89967 5.97494 6.01350 6.18415 6.22884 6.32558 6.45030 6.77721 6.94682 7.28870 7.33857 7.81518 8.08475 8.19566 8.54666 9.06595 9.62756 11.10195 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029086 B = 0.004203 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.416799 B = 6660.254177 C = 7042.179213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.527 5.527 3 C 0.194 3.806 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.091 3.909 13 C -0.044 4.044 14 C -0.085 4.085 15 C 0.031 3.969 16 C 0.033 3.967 17 C -0.097 4.097 18 C -0.006 4.006 19 Cl -0.029 7.029 20 O -0.308 6.308 21 C 0.214 3.786 22 O -0.308 6.308 23 H 0.043 0.957 24 H 0.076 0.924 25 H 0.011 0.989 26 H 0.032 0.968 27 H -0.009 1.009 28 H 0.260 0.740 29 H 0.088 0.912 30 H 0.038 0.962 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.083 0.917 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 -18.872 -5.973 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.251 5.251 3 C 0.070 3.930 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.037 4.037 13 C -0.046 4.046 14 C -0.105 4.105 15 C -0.013 4.013 16 C -0.012 4.012 17 C -0.116 4.116 18 C -0.034 4.034 19 Cl 0.000 7.000 20 O -0.224 6.224 21 C 0.102 3.898 22 O -0.224 6.224 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.030 0.970 26 H 0.050 0.950 27 H 0.009 0.991 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.056 0.944 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.100 0.900 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.684 -18.976 -5.461 19.928 hybrid contribution -0.519 0.728 0.054 0.896 sum -3.203 -18.248 -5.408 19.300 Atomic orbital electron populations 1.22253 0.88856 0.99572 1.00613 1.62151 1.06891 1.17739 1.38308 1.19743 0.95490 0.81073 0.96716 1.21182 1.34552 0.96768 1.01619 0.91757 1.24967 0.95362 0.97363 0.96898 1.69963 1.38559 1.11405 1.33998 0.86472 0.78144 0.79314 0.83683 1.19649 1.21063 1.21188 1.21042 1.01272 0.87474 0.93956 1.19652 0.94070 0.96881 0.93965 1.19908 0.97968 0.90866 1.01737 1.19727 0.91330 0.93963 0.96313 1.19431 0.97702 0.84415 0.99635 1.19760 0.96461 0.93780 1.01612 1.20265 0.95270 0.91676 0.96184 1.98416 1.48586 1.83724 1.69280 1.87349 1.66901 1.28395 1.39791 1.25604 0.95891 0.84048 0.84277 1.87366 1.45906 1.16830 1.72338 0.93774 0.90563 0.97026 0.95022 0.99087 0.93037 0.89404 0.94434 0.84159 0.83939 0.89964 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 9.15 60.06 0.55 1.24 16 2 N -0.53 -11.01 4.63 -245.83 -1.14 -12.15 16 3 C 0.19 4.94 4.72 -4.98 -0.02 4.91 16 4 C -0.50 -13.92 8.46 -34.44 -0.29 -14.22 16 5 H 0.06 1.78 7.12 -52.48 -0.37 1.41 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.09 1.57 4.42 -4.97 -0.02 1.55 16 13 C -0.04 -0.67 4.43 -104.58 -0.46 -1.14 16 14 C -0.09 -1.18 9.11 -39.47 -0.36 -1.54 16 15 C 0.03 0.42 7.15 -39.09 -0.28 0.14 16 16 C 0.03 0.44 7.15 -39.09 -0.28 0.16 16 17 C -0.10 -1.29 9.84 -39.43 -0.39 -1.68 16 18 C -0.01 -0.09 6.31 -39.51 -0.25 -0.34 16 19 Cl -0.03 -0.47 27.52 -51.86 -1.43 -1.90 16 20 O -0.31 -3.71 11.40 -45.69 -0.52 -4.23 16 21 C 0.21 1.88 8.89 101.05 0.90 2.78 16 22 O -0.31 -3.78 11.40 -45.76 -0.52 -4.30 16 23 H 0.04 0.77 6.87 -51.93 -0.36 0.41 16 24 H 0.08 1.60 6.76 -51.93 -0.35 1.24 16 25 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.03 0.86 7.93 -51.93 -0.41 0.44 16 27 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.09 1.54 7.37 -51.93 -0.38 1.16 16 30 H 0.04 0.62 7.93 -51.93 -0.41 0.21 16 31 H 0.14 1.75 8.00 -52.48 -0.42 1.33 16 32 H 0.14 1.64 8.06 -52.48 -0.42 1.21 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 305.09 15.07 4.60 4.60 Total: -1.00 -30.61 305.09 -8.26 -38.87 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -3.95 Total: -5.06 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -1.01 Total: -6.68 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.40 Total: -37.92 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -1.04 Total: -8.53 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.43 Total: -1.90 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.61 -8.26 -38.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138238463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.180 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds