Wall clock time and date at job start Tue Mar 31 2020 06:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39922 * 120.89091 * 213.61156 * 3 2 1 5 5 C 1.38392 * 119.18358 * 179.97438 * 4 3 2 6 6 N 1.31524 * 121.04814 * 359.72261 * 5 4 3 7 7 C 1.32721 * 121.98245 * 0.57071 * 6 5 4 8 8 C 1.48128 * 119.66033 * 179.70165 * 7 6 5 9 9 O 1.21549 * 120.00165 * 179.72808 * 8 7 6 10 10 N 1.34771 * 119.99909 * 359.73587 * 8 7 6 11 11 C 1.40494 * 120.00103 * 179.97438 * 10 8 7 12 12 C 1.40677 * 126.08648 * 359.97288 * 11 10 8 13 13 N 1.30901 * 108.38575 * 179.73878 * 12 11 10 14 14 N 1.40065 * 108.41616 * 0.43845 * 13 12 11 15 15 C 1.37312 * 126.07092 * 179.81743 * 14 13 12 16 16 H 1.08002 * 120.00634 * 179.69737 * 15 14 13 17 17 C 1.38992 * 119.99460 * 359.41615 * 15 14 13 18 18 N 1.31294 * 120.00157 * 0.27649 * 17 15 14 19 19 Si 1.86803 * 119.99838 * 180.27795 * 17 15 14 20 20 H 1.48504 * 109.47384 * 60.00081 * 19 17 15 21 21 H 1.48504 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 299.99983 * 19 17 15 23 23 C 1.35709 * 126.09104 * 179.97438 * 11 10 8 24 24 C 1.39196 * 120.68041 * 359.43380 * 7 6 5 25 25 H 1.07998 * 120.40785 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.47708 * 179.97438 * 5 4 3 27 27 H 0.97006 * 120.00412 * 359.97438 * 10 8 7 28 28 H 1.08000 * 125.80695 * 0.02562 * 12 11 10 29 29 H 0.97005 * 119.99961 * 179.97438 * 18 17 15 30 30 H 1.08003 * 126.24473 * 0.02562 * 23 11 10 31 31 H 1.07998 * 120.55178 * 180.29741 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2860 1.0009 0.6647 5 6 4.6693 0.9669 0.6423 6 7 5.3142 0.0091 0.0126 7 6 4.6778 -0.9579 -0.6365 8 6 5.4559 -2.0078 -1.3340 9 8 4.8794 -2.8991 -1.9263 10 7 6.8030 -1.9749 -1.3119 11 6 7.5410 -2.9710 -1.9730 12 6 7.0089 -4.0561 -2.6929 13 7 8.0026 -4.7629 -3.1689 14 7 9.2035 -4.1657 -2.7653 15 6 10.4679 -4.6121 -3.0612 16 1 11.3300 -4.0701 -2.7015 17 6 10.6382 -5.7648 -3.8189 18 7 9.5901 -6.4238 -4.2562 19 14 12.3582 -6.3765 -4.2150 20 1 13.0834 -6.6669 -2.9521 21 1 12.2677 -7.6144 -5.0304 22 1 13.0907 -5.3342 -4.9781 23 6 8.8941 -3.0576 -2.0308 24 6 3.2867 -0.9988 -0.6640 25 1 2.7670 1.7894 1.1894 26 1 5.2282 1.7369 1.1534 27 1 7.2631 -1.2635 -0.8395 28 1 5.9591 -4.2674 -2.8333 29 1 9.7090 -7.2281 -4.7853 30 1 9.5976 -2.3750 -1.5775 31 1 2.7710 -1.7893 -1.1888 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142461115.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:27 Heat of formation + Delta-G solvation = 100.240371 kcal Electronic energy + Delta-G solvation = -19855.643163 eV Core-core repulsion = 16524.832272 eV Total energy + Delta-G solvation = -3330.810890 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.081 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.96349 -41.33324 -39.80220 -37.88094 -35.99559 -35.02567 -33.85708 -32.70264 -32.14509 -29.64814 -27.07365 -26.16923 -25.16594 -23.00433 -22.60470 -21.28627 -20.37260 -19.19976 -18.02405 -17.61971 -17.32865 -16.99258 -16.49856 -16.40774 -15.93821 -15.45487 -15.45294 -15.01251 -14.99974 -14.75251 -14.24567 -14.17257 -14.15851 -13.46817 -13.29532 -12.96963 -12.85521 -12.84852 -12.12123 -11.85410 -11.23090 -11.00987 -10.98930 -10.80062 -10.67310 -10.33529 -10.08420 -8.51913 -8.45035 -6.22187 -0.63718 -0.28966 1.24445 1.37204 1.42167 1.49917 1.58424 1.80922 1.99522 2.01124 2.22174 2.49903 2.54586 2.82748 2.88658 3.11596 3.22386 3.70639 3.79191 3.85516 4.34444 4.44184 4.51461 4.60937 4.68736 4.89260 5.02199 5.09182 5.30612 5.43549 5.44741 5.97224 6.21309 6.30588 6.54287 6.74498 6.80846 7.29919 7.47603 7.68939 8.54089 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.050020 B = 0.003010 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.637860 B = 9299.560081 C = 9849.338718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.279 3.721 3 C 0.012 3.988 4 C -0.072 4.072 5 C 0.116 3.884 6 N -0.454 5.454 7 C 0.082 3.918 8 C 0.548 3.452 9 O -0.567 6.567 10 N -0.592 5.592 11 C -0.049 4.049 12 C -0.056 4.056 13 N -0.310 5.310 14 N -0.166 5.166 15 C -0.353 4.353 16 H 0.142 0.858 17 C -0.007 4.007 18 N -0.824 5.824 19 Si 1.020 2.980 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.253 1.253 23 C -0.076 4.076 24 C -0.073 4.073 25 H 0.195 0.805 26 H 0.221 0.779 27 H 0.425 0.575 28 H 0.170 0.830 29 H 0.276 0.724 30 H 0.190 0.810 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.688 17.250 11.457 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.037 4.037 3 C 0.001 3.999 4 C -0.095 4.095 5 C -0.044 4.044 6 N -0.166 5.166 7 C -0.054 4.054 8 C 0.334 3.666 9 O -0.446 6.446 10 N -0.235 5.235 11 C -0.155 4.155 12 C -0.232 4.232 13 N -0.142 5.142 14 N 0.065 4.935 15 C -0.484 4.484 16 H 0.160 0.840 17 C -0.219 4.219 18 N -0.452 5.452 19 Si 0.838 3.162 20 H -0.177 1.177 21 H -0.204 1.204 22 H -0.177 1.177 23 C -0.227 4.227 24 C -0.097 4.097 25 H 0.212 0.788 26 H 0.237 0.763 27 H 0.263 0.737 28 H 0.187 0.813 29 H 0.086 0.914 30 H 0.207 0.793 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.659 15.360 10.208 19.292 hybrid contribution -0.249 0.198 0.138 0.347 sum -5.908 15.558 10.346 19.596 Atomic orbital electron populations 1.81328 1.12906 1.08260 1.08649 1.25383 0.92181 0.93064 0.93084 1.16080 0.84307 0.97888 1.01675 1.22971 0.95585 0.96592 0.94328 1.23648 0.91522 0.95191 0.94045 1.67492 1.42157 1.01482 1.05449 1.20431 0.90782 0.94979 0.99246 1.18262 0.81995 0.85128 0.81209 1.90689 1.70564 1.37613 1.45725 1.42212 1.05066 1.26143 1.50076 1.17332 0.90038 0.97116 1.11060 1.24210 0.99268 0.96330 1.03359 1.78155 0.89054 1.22172 1.24821 1.44847 1.05461 1.14452 1.28744 1.20605 0.80906 1.11411 1.35510 0.84022 1.26893 1.04514 0.95653 0.94796 1.70394 1.32587 1.14804 1.27444 0.84649 0.74393 0.77878 0.79259 1.17685 1.20426 1.17684 1.22012 0.94799 0.97124 1.08731 1.22039 0.93498 0.97979 0.96160 0.78777 0.76269 0.73672 0.81302 0.91396 0.79324 0.83597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.80 18.54 19.01 0.35 -9.45 16 2 C 0.28 4.81 15.40 88.33 1.36 6.17 16 3 C 0.01 0.16 5.75 -21.23 -0.12 0.04 16 4 C -0.07 -0.45 9.86 22.71 0.22 -0.22 16 5 C 0.12 0.89 11.17 84.78 0.95 1.84 16 6 N -0.45 -7.99 9.51 -185.17 -1.76 -9.75 16 7 C 0.08 1.97 6.75 41.87 0.28 2.25 16 8 C 0.55 19.07 7.78 86.87 0.68 19.74 16 9 O -0.57 -24.24 13.46 -3.87 -0.05 -24.29 16 10 N -0.59 -20.92 5.45 -306.28 -1.67 -22.59 16 11 C -0.05 -2.26 6.90 37.76 0.26 -2.00 16 12 C -0.06 -3.07 10.85 85.43 0.93 -2.14 16 13 N -0.31 -18.71 10.39 -56.45 -0.59 -19.30 16 14 N -0.17 -9.21 3.74 -189.99 -0.71 -9.92 16 15 C -0.35 -18.57 10.25 84.02 0.86 -17.71 16 16 H 0.14 6.39 7.83 -2.91 -0.02 6.37 16 17 C -0.01 -0.36 5.50 84.95 0.47 0.11 16 18 N -0.82 -47.57 11.81 21.66 0.26 -47.32 16 19 Si 1.02 38.28 29.55 68.60 2.03 40.31 16 20 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 21 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 23 C -0.08 -3.51 11.49 83.38 0.96 -2.55 16 24 C -0.07 -1.50 9.38 22.89 0.21 -1.28 16 25 H 0.20 -0.38 8.06 -2.91 -0.02 -0.41 16 26 H 0.22 -0.29 8.06 -2.91 -0.02 -0.31 16 27 H 0.42 11.83 8.15 -92.70 -0.76 11.07 16 28 H 0.17 9.22 5.92 -2.91 -0.02 9.20 16 29 H 0.28 14.70 8.31 -92.70 -0.77 13.93 16 30 H 0.19 6.80 8.06 -2.91 -0.02 6.78 16 31 H 0.15 3.34 7.64 -2.91 -0.02 3.31 16 Total: -1.00 -79.51 296.88 5.37 -74.14 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.46 Total: 23.92 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 7.06 Total: 4.24 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -4.12 Total: -118.32 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -79.51 5.37 -74.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142461115.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.378 kcal (2) G-P(sol) polarization free energy of solvation -79.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds