Wall clock time and date at job start Tue Mar 31 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99862 * 2 1 4 4 H 1.48504 * 109.47137 * 270.00098 * 3 2 1 5 5 H 1.48501 * 109.47386 * 30.00419 * 3 2 1 6 6 H 1.48502 * 109.47009 * 150.00160 * 3 2 1 7 7 C 1.37881 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99700 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99755 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46979 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47262 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47074 * 179.97438 * 11 10 9 13 13 C 1.39033 * 119.99551 * 180.02562 * 12 11 10 14 14 C 1.39522 * 119.62325 * 359.97438 * 13 12 11 15 15 C 1.38196 * 119.31695 * 179.97438 * 14 13 12 16 16 C 1.38996 * 118.57253 * 0.02562 * 15 14 13 17 17 Cl 1.73599 * 120.40239 * 179.97438 * 16 15 14 18 18 C 1.39227 * 119.18786 * 0.27565 * 16 15 14 19 19 C 1.48065 * 119.69038 * 179.72158 * 18 16 15 20 20 N 1.34774 * 120.00216 * 179.97438 * 19 18 16 21 21 O 1.21531 * 119.99578 * 0.02562 * 19 18 16 22 22 N 1.32011 * 119.61873 * 179.97438 * 13 12 11 23 23 H 0.97002 * 119.99796 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47605 * 60.00056 * 9 7 2 25 25 H 1.08994 * 109.47260 * 299.99683 * 9 7 2 26 26 H 1.08997 * 109.46982 * 60.00195 * 10 9 7 27 27 H 1.09002 * 109.46983 * 299.99814 * 10 9 7 28 28 H 1.09003 * 109.46922 * 59.99758 * 11 10 9 29 29 H 1.08999 * 109.47219 * 300.00611 * 11 10 9 30 30 H 0.96993 * 120.00222 * 0.02562 * 12 11 10 31 31 H 1.07999 * 120.33876 * 0.02562 * 14 13 12 32 32 H 1.08003 * 120.71783 * 179.97438 * 15 14 13 33 33 H 0.96998 * 119.99776 * 359.97438 * 20 19 18 34 34 H 0.96996 * 120.00346 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6366 -0.0022 12 7 6.0398 -4.0178 -0.0015 13 6 7.4067 -4.2718 -0.0019 14 6 8.3063 -3.2054 -0.0035 15 6 9.6636 -3.4651 -0.0033 16 6 10.0871 -4.7890 -0.0020 17 17 11.7809 -5.1695 -0.0024 18 6 9.1363 -5.8060 -0.0068 19 6 9.5751 -7.2202 -0.0118 20 7 8.6601 -8.2097 -0.0160 21 8 10.7604 -7.4885 -0.0112 22 7 7.8385 -5.5193 -0.0007 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6805 0.8888 25 1 3.8744 -0.6801 -0.8911 26 1 3.6578 -3.1506 -0.8907 27 1 3.6585 -3.1502 0.8893 28 1 5.9155 -2.1224 0.8873 29 1 5.9141 -2.1231 -0.8926 30 1 5.4095 -4.7550 -0.0008 31 1 7.9456 -2.1874 -0.0040 32 1 10.3800 -2.6568 -0.0049 33 1 7.7141 -7.9954 -0.0154 34 1 8.9475 -9.1361 -0.0189 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157638097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:52 Heat of formation + Delta-G solvation = -10.049004 kcal Electronic energy + Delta-G solvation = -18748.948233 eV Core-core repulsion = 15514.462330 eV Total energy + Delta-G solvation = -3234.485903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.83590 -39.10007 -36.86748 -36.22038 -33.99034 -33.74564 -32.57872 -31.83882 -29.73208 -26.93664 -25.27819 -23.29405 -22.66045 -20.88814 -20.46710 -18.40852 -17.80034 -17.00618 -16.73048 -16.45827 -15.74573 -15.62066 -15.03990 -14.67411 -14.38215 -14.07457 -13.90903 -13.51903 -12.85177 -12.76694 -12.67059 -12.08474 -11.97605 -11.51539 -11.22264 -11.03736 -10.51374 -10.27650 -10.09855 -10.08498 -9.91260 -9.84174 -9.80608 -9.55100 -9.34091 -8.64850 -7.84343 -6.14811 -4.14461 0.40180 1.00801 2.05683 2.58542 2.87755 3.22545 3.24193 3.30958 3.31956 3.61652 4.17196 4.34977 4.54802 4.62878 4.77748 5.18431 5.19028 5.24876 5.37744 5.53209 5.61452 5.73271 5.92631 6.24939 6.28027 6.51876 6.61239 6.73148 7.07336 7.09033 7.21734 7.36060 7.65729 7.76039 8.03066 8.40860 8.89039 9.46518 10.98463 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.035011 B = 0.002901 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.553171 B = 9648.908553 C =10422.706573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.113 4.113 11 C 0.117 3.883 12 N -0.711 5.711 13 C 0.410 3.590 14 C -0.200 4.200 15 C -0.032 4.032 16 C -0.104 4.104 17 Cl -0.033 7.033 18 C 0.134 3.866 19 C 0.573 3.427 20 N -0.836 5.836 21 O -0.516 6.516 22 N -0.517 5.517 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.014 0.986 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.408 0.592 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.411 0.589 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.430 -10.454 -0.008 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.151 4.151 11 C -0.006 4.006 12 N -0.341 5.341 13 C 0.170 3.830 14 C -0.226 4.226 15 C -0.058 4.058 16 C -0.138 4.138 17 Cl -0.004 7.004 18 C -0.006 4.006 19 C 0.355 3.645 20 N -0.400 5.400 21 O -0.390 6.390 22 N -0.238 5.238 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.244 0.756 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.242 0.758 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 19.548 -10.832 0.000 22.348 hybrid contribution 0.256 1.101 -0.020 1.130 sum 19.803 -9.731 -0.021 22.065 Atomic orbital electron populations 1.69909 1.06352 1.27056 1.50651 1.25040 0.94756 0.99258 0.94417 0.86766 0.80319 0.83552 0.78552 1.20227 1.21318 1.18978 1.21072 0.89239 0.94577 1.51420 0.90978 1.19494 0.97469 0.91182 0.96592 1.21693 0.89997 1.01225 1.02189 1.21833 0.97223 0.80299 1.01269 1.44893 1.01720 1.09492 1.78012 1.18403 0.86478 0.88240 0.89840 1.21714 0.92369 1.00383 1.08122 1.21290 0.95799 0.94779 0.93932 1.21511 0.87415 0.94183 1.10677 1.98389 1.10899 1.94477 1.96682 1.20464 0.87634 0.93788 0.98738 1.17792 0.85672 0.84476 0.76528 1.43643 1.10912 1.08848 1.76589 1.90925 1.15888 1.83508 1.48670 1.67109 1.14960 1.21065 1.20691 0.92596 0.96313 0.96739 0.91849 0.91817 0.91783 0.91776 0.75592 0.83413 0.83290 0.75846 0.76485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 2 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 3 Si 0.88 20.58 27.47 -169.99 -4.67 15.91 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 7 C -0.53 -14.09 9.66 -34.44 -0.33 -14.42 16 8 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 9 C -0.01 -0.20 4.04 -27.89 -0.11 -0.31 16 10 C -0.11 -1.87 5.27 -26.73 -0.14 -2.01 16 11 C 0.12 1.50 4.89 -4.04 -0.02 1.48 16 12 N -0.71 -8.35 5.73 -60.40 -0.35 -8.70 16 13 C 0.41 4.91 7.65 -155.18 -1.19 3.72 16 14 C -0.20 -2.12 9.33 -39.12 -0.36 -2.49 16 15 C -0.03 -0.32 9.96 -39.32 -0.39 -0.71 16 16 C -0.10 -1.24 6.37 -38.93 -0.25 -1.49 16 17 Cl -0.03 -0.40 26.01 -51.86 -1.35 -1.75 16 18 C 0.13 1.66 6.75 -83.00 -0.56 1.10 16 19 C 0.57 6.89 8.07 -12.23 -0.10 6.79 16 20 N -0.84 -6.98 8.86 30.58 0.27 -6.71 16 21 O -0.52 -7.41 14.76 5.34 0.08 -7.34 16 22 N -0.52 -6.23 9.57 -8.97 -0.09 -6.31 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 25 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.79 7.92 -51.93 -0.41 0.38 16 29 H 0.06 0.79 7.92 -51.93 -0.41 0.37 16 30 H 0.41 4.53 8.59 -40.82 -0.35 4.17 16 31 H 0.15 1.34 6.70 -52.49 -0.35 0.99 16 32 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.41 3.01 8.15 -40.82 -0.33 2.67 16 34 H 0.40 2.55 8.93 -40.82 -0.36 2.18 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -31.24 308.19 -8.08 -39.32 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -3.84 Total: 3.62 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -3.55 Total: -6.56 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.61 Total: -47.84 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.08 Total: -7.34 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.35 Total: -1.75 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.24 -8.08 -39.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.271 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds