Wall clock time and date at job start Tue Mar 31 2020 05:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45199 * 109.47031 * 2 1 4 4 C 1.34233 * 117.00010 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99879 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99822 * 179.97438 * 4 3 2 7 7 S 1.81398 * 109.46879 * 180.02562 * 6 4 3 8 8 C 1.76208 * 103.00062 * 180.02562 * 7 6 4 9 9 C 1.39337 * 120.04460 * 180.02562 * 8 7 6 10 10 N 1.32023 * 120.07903 * 180.02562 * 9 8 7 11 11 C 1.32087 * 120.18874 * 359.97438 * 10 9 8 12 12 C 1.39214 * 120.08526 * 0.02562 * 11 10 9 13 13 N 1.38810 * 120.03984 * 179.97438 * 12 11 10 14 14 C 1.36895 * 120.00011 * 359.97438 * 13 12 11 15 15 H 1.08002 * 120.00320 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99798 * 179.72356 * 14 13 12 17 17 N 1.31572 * 119.99783 * 180.27464 * 16 14 13 18 18 Si 1.86800 * 120.00209 * 0.27758 * 16 14 13 19 19 H 1.48498 * 109.47118 * 89.99559 * 18 16 14 20 20 H 1.48499 * 109.47134 * 210.00079 * 18 16 14 21 21 H 1.48498 * 109.47011 * 329.99700 * 18 16 14 22 22 N 1.32733 * 120.04066 * 0.27210 * 8 7 6 23 23 H 1.08997 * 109.46853 * 60.00388 * 1 2 3 24 24 H 1.09004 * 109.46825 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47280 * 300.00008 * 1 2 3 26 26 H 1.08997 * 109.47280 * 239.99992 * 2 1 3 27 27 H 1.08997 * 109.46853 * 119.99612 * 2 1 3 28 28 H 1.09005 * 109.47249 * 60.00249 * 6 4 3 29 29 H 1.09000 * 109.47732 * 300.00279 * 6 4 3 30 30 H 1.07993 * 119.95855 * 0.04684 * 9 8 7 31 31 H 1.08000 * 119.96286 * 180.02562 * 11 10 9 32 32 H 0.97000 * 119.99686 * 179.97438 * 13 12 11 33 33 H 0.96996 * 119.99653 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 16 5.7322 2.8425 0.0001 8 6 6.2179 4.5363 0.0002 9 6 7.5696 4.8745 -0.0002 10 7 7.9343 6.1433 0.0004 11 6 7.0205 7.0970 0.0009 12 6 5.6679 6.7675 0.0013 13 7 4.7083 7.7706 0.0023 14 6 5.0918 9.0847 0.0034 15 1 6.1410 9.3411 0.0031 16 6 4.1322 10.0877 -0.0014 17 7 4.5008 11.3508 -0.0058 18 14 2.3176 9.6444 -0.0015 19 1 1.8353 9.5321 1.3985 20 1 1.5496 10.7020 -0.7064 21 1 2.1252 8.3464 -0.6969 22 7 5.2966 5.4918 0.0056 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.5843 3.4701 0.8895 29 1 3.5852 3.4691 -0.8904 30 1 8.3198 4.0977 -0.0013 31 1 7.3229 8.1338 0.0009 32 1 3.7661 7.5403 0.0022 33 1 3.8303 12.0516 -0.0087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182388.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:39 Heat of formation + Delta-G solvation = -33.335196 kcal Electronic energy + Delta-G solvation = -18810.868240 eV Core-core repulsion = 15577.416279 eV Total energy + Delta-G solvation = -3233.451961 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.61529 -39.88393 -36.88703 -35.95038 -33.29220 -32.35519 -32.21140 -30.17569 -29.24766 -25.20414 -23.95204 -23.68781 -22.26147 -21.37014 -18.86042 -18.09906 -17.60472 -17.00085 -16.44916 -16.24031 -15.79392 -15.50560 -14.89437 -14.75372 -14.22014 -13.77547 -13.56124 -13.46618 -13.17907 -12.95350 -12.55105 -12.15783 -12.00726 -11.90222 -11.85562 -11.02685 -10.85437 -10.82527 -10.82474 -10.64116 -10.48230 -10.44507 -10.31589 -9.30779 -8.32438 -8.03941 -7.05039 -6.79313 -4.11688 1.27862 1.66021 1.96487 2.14363 2.29627 2.59986 2.87930 2.89552 2.94563 3.76136 4.22606 4.39850 4.42544 4.60934 4.66504 4.91851 4.94627 4.94637 5.30643 5.33798 5.38047 5.44837 5.52860 5.64204 5.67674 6.15483 6.18954 6.28145 7.02590 7.18308 7.47291 7.50011 7.98150 8.22697 8.63581 8.86979 9.04664 10.29604 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.004463 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.808940 B = 6272.034341 C = 8067.091572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.483 3.517 5 O -0.493 6.493 6 C -0.114 4.114 7 S -0.010 6.010 8 C 0.123 3.877 9 C -0.069 4.069 10 N -0.389 5.389 11 C -0.023 4.023 12 C 0.329 3.671 13 N -0.538 5.538 14 C -0.309 4.309 15 H 0.126 0.874 16 C 0.050 3.950 17 N -0.854 5.854 18 Si 0.884 3.116 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.264 1.264 22 N -0.552 5.552 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.149 0.851 31 H 0.164 0.836 32 H 0.384 0.616 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.173 -16.258 0.010 17.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.324 3.676 5 O -0.380 6.380 6 C -0.263 4.263 7 S 0.226 5.774 8 C -0.133 4.133 9 C -0.235 4.235 10 N -0.102 5.102 11 C -0.200 4.200 12 C 0.080 3.920 13 N -0.146 5.146 14 C -0.439 4.439 15 H 0.144 0.856 16 C -0.158 4.158 17 N -0.488 5.488 18 Si 0.709 3.291 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.189 1.189 22 N -0.283 5.283 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.166 0.834 31 H 0.181 0.819 32 H 0.219 0.781 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.470 -17.019 0.015 18.208 hybrid contribution -2.224 1.027 -0.021 2.450 sum -8.694 -15.992 -0.006 18.203 Atomic orbital electron populations 1.21819 0.92455 1.03018 1.03737 1.23086 0.95455 0.79833 1.02830 1.86504 1.23749 1.32705 1.84034 1.22735 0.80968 0.91247 0.72653 1.90704 1.60094 1.42521 1.44713 1.23081 0.98282 0.94614 1.10285 1.85783 0.99050 0.99999 1.92564 1.23617 0.93711 0.97076 0.98893 1.22209 0.92414 0.93940 1.14985 1.68030 1.36537 1.00076 1.05534 1.22818 0.88035 0.99516 1.09667 1.18880 0.89499 0.86398 0.97265 1.41041 1.05746 1.03996 1.63797 1.19508 0.97191 0.78392 1.48763 0.85625 1.25050 0.99518 0.94836 0.96397 1.69662 1.35562 0.98952 1.44588 0.86548 0.83729 0.79234 0.79609 1.18965 1.19481 1.18937 1.68039 1.35263 0.99400 1.25597 0.91348 0.90126 0.91352 0.91001 0.91001 0.85074 0.85094 0.83366 0.81896 0.78053 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 37.16 0.38 -0.59 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.35 -4.13 10.22 -39.27 -0.40 -4.53 16 4 C 0.48 6.40 7.98 36.00 0.29 6.69 16 5 O -0.49 -7.54 15.61 -18.75 -0.29 -7.84 16 6 C -0.11 -1.54 5.82 36.00 0.21 -1.33 16 7 S -0.01 -0.15 21.06 -107.50 -2.26 -2.42 16 8 C 0.12 2.30 7.00 -16.75 -0.12 2.19 16 9 C -0.07 -1.31 10.98 -17.06 -0.19 -1.50 16 10 N -0.39 -8.13 10.48 -12.64 -0.13 -8.26 16 11 C -0.02 -0.50 10.48 -17.08 -0.18 -0.68 16 12 C 0.33 7.18 7.63 -154.78 -1.18 6.00 16 13 N -0.54 -11.99 5.24 -11.08 -0.06 -12.04 16 14 C -0.31 -7.49 10.03 -15.08 -0.15 -7.65 16 15 H 0.13 3.18 5.89 -52.49 -0.31 2.87 16 16 C 0.05 1.22 5.50 -17.45 -0.10 1.12 16 17 N -0.85 -21.98 13.97 55.49 0.77 -21.21 16 18 Si 0.88 17.95 27.74 -169.99 -4.72 13.23 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.26 -5.14 6.51 56.52 0.37 -4.77 16 22 N -0.55 -11.20 9.63 -11.08 -0.11 -11.30 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 27 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 28 H 0.13 1.71 8.14 -51.92 -0.42 1.28 16 29 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 30 H 0.15 2.43 8.06 -52.49 -0.42 2.01 16 31 H 0.16 3.50 5.94 -52.49 -0.31 3.18 16 32 H 0.38 8.13 5.87 -40.82 -0.24 7.89 16 33 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 307.62 15.07 4.64 4.64 Total: -1.00 -27.41 307.62 -6.77 -34.18 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -3.41 Total: 10.52 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -0.80 Total: 5.03 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.48 Total: -52.81 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.69 Total: -12.37 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -4.72 Total: 13.23 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -2.26 Total: -2.42 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.41 -6.77 -34.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182388.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.850 kcal (2) G-P(sol) polarization free energy of solvation -27.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds